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Search of human proteins with 70906430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70906430 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17 [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70906430 adaptor-related protein complex 2, sigma 1 subunit i... 289 6e-79
gi|11038643 adaptor-related protein complex 2, sigma 1 subunit i... 190 4e-49
gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [H... 144 2e-35
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H... 142 7e-35
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [... 140 5e-34
gi|189409104 adaptor-related protein complex 4, sigma 1 subunit ... 123 6e-29
gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [H... 114 4e-26
gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [H... 110 4e-25
gi|21361394 adaptor-related protein complex 4, sigma 1 subunit i... 94 3e-20
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo... 38 0.003
gi|68799814 adaptor-related protein complex 2, mu 1 subunit isof... 37 0.007
gi|14917109 adaptor-related protein complex 2, mu 1 subunit isof... 37 0.007
gi|11863154 archain isoform 1 [Homo sapiens] 35 0.027
gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens] 32 0.23
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso... 31 0.39
gi|14210504 adaptor-related protein complex 1, mu 1 subunit isof... 31 0.39
gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo... 30 0.88
gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Hom... 30 0.88
gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Ho... 30 0.88
gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo... 30 0.88
gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens] 26 9.7
gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens] 26 9.7
>gi|70906430 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17 [Homo sapiens]
Length = 142
Score = 289 bits (739), Expect = 6e-79
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GEIRETSQTKVLKQLLMLQSLE 142
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>gi|11038643 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17delta [Homo sapiens]
Length = 104
Score = 190 bits (482), Expect = 4e-49
Identities = 104/142 (73%), Positives = 104/142 (73%), Gaps = 38/142 (26%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 121 GEIRETSQTKVLKQLLMLQSLE 142
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 83 GEIRETSQTKVLKQLLMLQSLE 104
>gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [Homo
sapiens]
Length = 158
Score = 144 bits (364), Expect = 2e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GEIRETSQTKVLKQL 135
G++++TS+ VLK +
Sbjct: 121 GDVQDTSKKSVLKAI 135
>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
sapiens]
Length = 157
Score = 142 bits (359), Expect = 7e-35
Identities = 64/134 (47%), Positives = 94/134 (70%)
Query: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
++F+L+ +R GK RL KWY+ D EK+K+ E+ V R K +F+E+R+ KI+Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 122 EIRETSQTKVLKQL 135
E++ETS+ VLK +
Sbjct: 121 EVQETSKKNVLKAI 134
>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
[Homo sapiens]
Length = 154
Score = 140 bits (352), Expect = 5e-34
Identities = 60/135 (44%), Positives = 94/135 (69%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
MI FIL+ +R GK RL KWY+ D E++K+ E+ ++ R + ++FV+++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
RYA LYFC ++ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 121 GEIRETSQTKVLKQL 135
GEI+ETS+ +K +
Sbjct: 121 GEIQETSKKIAVKAI 135
>gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
isoform 2 [Homo sapiens]
Length = 144
Score = 123 bits (308), Expect = 6e-29
Identities = 61/141 (43%), Positives = 95/141 (67%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
MI+F L+ N+ G+TRL+K+Y D +++ L EV R + +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 121 GEIRETSQTKVLKQLLMLQSL 141
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [Homo
sapiens]
Length = 193
Score = 114 bits (284), Expect = 4e-26
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
EM + G + ET+ +++ Q+ LE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [Homo
sapiens]
Length = 193
Score = 110 bits (275), Expect = 4e-25
Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
E+ + G + ET+ +++ Q+ LE
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE 148
>gi|21361394 adaptor-related protein complex 4, sigma 1 subunit
isoform 1 [Homo sapiens]
Length = 159
Score = 94.4 bits (233), Expect = 3e-20
Identities = 46/105 (43%), Positives = 70/105 (66%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
MI+F L+ N+ G+TRL+K+Y D +++ L EV R + +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVF 105
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD+ F
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF 105
>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
sapiens]
Length = 423
Score = 37.7 bits (86), Expect = 0.003
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 58 IYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
++ +++ LY N N ++ +EV EYF + E + NF VY ++DE+
Sbjct: 58 LWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDEL 117
Query: 118 FLAGEIRETSQTKVLKQLLMLQS 140
G +T+ +K+L++ + QS
Sbjct: 118 MDFG-FPQTTDSKILQEYITQQS 139
>gi|68799814 adaptor-related protein complex 2, mu 1 subunit isoform
b [Homo sapiens]
Length = 433
Score = 36.6 bits (83), Expect = 0.007
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIIY 59
MI + I N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFIYNHKGEVLISRVYR---DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
+ + ++ N N E ++ +V+ YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILD 117
Query: 120 AGEIRETSQTKVLKQLLMLQSLE 142
G + S+T LK + Q ++
Sbjct: 118 FG-YPQNSETGALKTFITQQGIK 139
>gi|14917109 adaptor-related protein complex 2, mu 1 subunit isoform
a [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.007
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIIY 59
MI + I N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFIYNHKGEVLISRVYR---DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
+ + ++ N N E ++ +V+ YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILD 117
Query: 120 AGEIRETSQTKVLKQLLMLQSLE 142
G + S+T LK + Q ++
Sbjct: 118 FG-YPQNSETGALKTFITQQGIK 139
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 34.7 bits (78), Expect = 0.027
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 10 RAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCI 69
+AGK +++ +++ + L+ ++ K FVE + + +Y+ LY +
Sbjct: 11 KAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNT--GKQHTFVETESVRYVYQPMEKLYMVL 68
Query: 70 CVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
N N L LE + F V+ EY + E ++ + + + DE+ G
Sbjct: 69 ITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
>gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens]
Length = 519
Score = 31.6 bits (70), Expect = 0.23
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 69 ICVDVNDNNLAYLEAIHNFVEVLNEYFH 96
+C V DN++ L+A N VEVL + FH
Sbjct: 189 LCAPVRDNDIRELKATGNIVEVLRQIFH 216
>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Homo sapiens]
Length = 435
Score = 30.8 bits (68), Expect = 0.39
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
++ V+V +EYF + E + NF +Y ++DE+ G +T+ +K+L++ +
Sbjct: 84 LYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFG-YPQTTDSKILQEYI 135
>gi|14210504 adaptor-related protein complex 1, mu 1 subunit isoform
2 [Homo sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 0.39
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
++ V+V +EYF + E + NF +Y ++DE+ G +T+ +K+L++ +
Sbjct: 84 LYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFG-YPQTTDSKILQEYI 135
>gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 0.88
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 23 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLE 82
F+ EK +E V V++ H + IYR L+F + L +E
Sbjct: 33 FEAQEKAADVENVPPVIST---PHHYLIS------IYRDK--LFFVSVIQTEVPPLFVIE 81
Query: 83 AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
+H + +YF E + N VY +++EM L +++ +LK+L+
Sbjct: 82 FLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM-LDNGFPLATESNILKELI 134
>gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 0.88
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 23 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLE 82
F+ EK +E V V++ H + IYR L+F + L +E
Sbjct: 33 FEAQEKAADVENVPPVIST---PHHYLIS------IYRDK--LFFVSVIQTEVPPLFVIE 81
Query: 83 AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
+H + +YF E + N VY +++EM L +++ +LK+L+
Sbjct: 82 FLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM-LDNGFPLATESNILKELI 134
>gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 0.88
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 65 LYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124
++F + L +E +H V+ +YF E + N VY V++EM L
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEM-LDNGFP 122
Query: 125 ETSQTKVLKQLL 136
+++ +LK+L+
Sbjct: 123 LATESNILKELI 134
>gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 0.88
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 65 LYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124
++F + L +E +H V+ +YF E + N VY V++EM L
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEM-LDNGFP 122
Query: 125 ETSQTKVLKQLL 136
+++ +LK+L+
Sbjct: 123 LATESNILKELI 134
>gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens]
Length = 867
Score = 26.2 bits (56), Expect = 9.7
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 18 KWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDN- 76
K + ++ ++EK+KL++E+ V + + FK + + + L + + N
Sbjct: 284 KLFDRWKEEEKEKLVDEMEKV---------KEMFMKEFKELTSKNSALEYQLSEIQKSNM 334
Query: 77 ----NLAYLEAIHNFVEVLNEY---FHNVCEL 101
N+ L+ H F E + Y FHNV +L
Sbjct: 335 QIKSNIGTLKDAHEFKEDRSPYPQDFHNVMQL 366
>gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens]
Length = 848
Score = 26.2 bits (56), Expect = 9.7
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 18 KWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDN- 76
K + ++ ++EK+KL++E+ V + + FK + + + L + + N
Sbjct: 284 KLFDRWKEEEKEKLVDEMEKV---------KEMFMKEFKELTSKNSALEYQLSEIQKSNM 334
Query: 77 ----NLAYLEAIHNFVEVLNEY---FHNVCEL 101
N+ L+ H F E + Y FHNV +L
Sbjct: 335 QIKSNIGTLKDAHEFKEDRSPYPQDFHNVMQL 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,352,469
Number of Sequences: 37866
Number of extensions: 166012
Number of successful extensions: 534
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 23
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.