Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZRANB3 Sequence: fasta or formatted (1079aa) NCBI GI: 62860046
Description:

zinc finger, RAN-binding domain containing 3

Referenced in:

Nonhistone Chromosomal Proteins
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         69           3
 C cysteine            2.7         29           1
 D aspartate           5.3         57           2
 E glutamate           7.1         77           2
 F phenylalanine       3.5         38           2
 G glycine             4.2         45           4
 H histidine           2.1         23           2
 I isoleucine          5.7         61           2
 K lysine              7.9         85           2
 L leucine             9.3        100           2
 M methionine          2.2         24           2
 N asparagine          4.2         45           2
 P proline             4.7         51           2
 Q glutamine           6.1         66           2
 R arginine            6.1         66           2
 S serine              7.1         77           3
 T threonine           6.5         70           2
 V valine              5.0         54           2
 W tryptophan          1.7         18           1
 Y tyrosine            2.2         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, RAN-binding domain containing 3 
SMARCAL1              0.151   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.151   SWI/SNF-related matrix-associated actin-dependent r...
SMARCAD1              0.058   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.058   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.057   SWI/SNF-related, matrix-associated actin-dependent ...
CHD2                  0.057   chromodomain helicase DNA binding protein 2 isoform...
CHD1L                 0.052   chromodomain helicase DNA binding protein 1-like [H...
BTAF1                 0.052   BTAF1 RNA polymerase II, B-TFIID transcription facto...
CHD1                  0.051   chromodomain helicase DNA binding protein 1 
SMARCA2               0.050   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.050   SWI/SNF-related matrix-associated actin-dependent re...
CHD7                  0.049   chromodomain helicase DNA binding protein 7 
CHD3                  0.048   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.048   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.048   chromodomain helicase DNA binding protein 3 isoform...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.048   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.048   SWI/SNF-related matrix-associated actin-dependent re...
CHD8                  0.047   chromodomain helicase DNA binding protein 8 
CHD5                  0.047   chromodomain helicase DNA binding protein 5 
CHD4                  0.046   chromodomain helicase DNA binding protein 4 
CHD9                  0.046   chromodomain helicase DNA binding protein 9 
CHD6                  0.045   chromodomain helicase DNA binding protein 6 
SMARCA1               0.045   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press