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Search of human proteins with 61676082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61676082 shadow of prion protein [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61676082 shadow of prion protein [Homo sapiens] 310 4e-85
gi|33188461 GATA binding protein 4 [Homo sapiens] 44 4e-05
gi|55956899 keratin 9 [Homo sapiens] 44 4e-05
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 44 4e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 7e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 7e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 7e-05
gi|7706435 headcase [Homo sapiens] 43 1e-04
gi|24497554 homeobox A13 [Homo sapiens] 42 2e-04
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 42 2e-04
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 42 2e-04
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 42 2e-04
gi|195972866 keratin 10 [Homo sapiens] 42 2e-04
gi|12707580 paired-like homeobox 2b [Homo sapiens] 42 2e-04
gi|47132620 keratin 2 [Homo sapiens] 42 2e-04
gi|126352608 elastin isoform e precursor [Homo sapiens] 42 3e-04
gi|126352440 elastin isoform a precursor [Homo sapiens] 42 3e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 42 3e-04
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 41 3e-04
gi|24432032 zinc finger protein 503 [Homo sapiens] 41 3e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 4e-04
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 41 4e-04
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 41 4e-04
gi|119395750 keratin 1 [Homo sapiens] 40 6e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 40 6e-04
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 40 6e-04
gi|109255251 loricrin [Homo sapiens] 40 6e-04
gi|109452587 family with sequence similarity 98, member B isofor... 40 8e-04
gi|24430190 keratin 15 [Homo sapiens] 40 0.001
gi|126090909 engrailed homeobox 1 [Homo sapiens] 40 0.001
>gi|61676082 shadow of prion protein [Homo sapiens]
Length = 151
Score = 310 bits (793), Expect = 4e-85
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MNWAPATCWALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAP 60
MNWAPATCWALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAP
Sbjct: 1 MNWAPATCWALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAP 60
Query: 61 GSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSY 120
GSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSY
Sbjct: 61 GSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSY 120
Query: 121 RAWTSGAGPTRGPRLCLVLGGALGALGLLRP 151
RAWTSGAGPTRGPRLCLVLGGALGALGLLRP
Sbjct: 121 RAWTSGAGPTRGPRLCLVLGGALGALGLLRP 151
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 44.3 bits (103), Expect = 4e-05
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GAA G G + + G + GA GA+ + R+ PG++ +AAA AA AAA AA
Sbjct: 73 GAASGAGPGTQQGSPGWSQAGADGAAYTPPPVSPRFSFPGTTGSLAAAAAA--AAAREAA 130
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIY-SYRA-----WTSGAGPTRGP 133
++G G AAG G G E+ G G G+ Y +Y A W + A + GP
Sbjct: 131 AYSSGGG---AAGAGLAG--REQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGP 183
Score = 28.1 bits (61), Expect = 3.0
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 29 GGARGSARGGVRGGARGASRVRVRPAQRYGAPG---SSLRVAAAGAAAGAAAGAAAGLAA 85
G G GA AS P R + S L+ AG+A+G A+G ++G AA
Sbjct: 16 GAYEAGGPGAFMHGAGAASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASGGSSGGAA 75
Query: 86 GSGWRRAAGPGERGLEDEEDGVPGGNGTG 114
AGPG + G PG + G
Sbjct: 76 S-----GAGPG------TQQGSPGWSQAG 93
Score = 26.6 bits (57), Expect = 8.6
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 4 APATCWALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSS 63
A A A AAA+ GAA G G R G G Y +P +
Sbjct: 119 AAAAAAAAREAAAYSSGGGAAGAGLAGREQYGRAGFAGS--------------YSSPYPA 164
Query: 64 LRVAAAGAAAGAAAGAAAG 82
+A GA+ AAA A+AG
Sbjct: 165 Y-MADVGASWAAAAAASAG 182
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 44.3 bits (103), Expect = 4e-05
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 21 SGAAK---GGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGA---AAG 74
SGA K GGRGG+ GS G RGG+ G S YG GS R + G+ +G
Sbjct: 468 SGAGKIGLGGRGGSGGSYGRGSRGGS-GGSYGGGGSGGGYGG-GSGSRGGSGGSYGGGSG 525
Query: 75 AAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
+ G+ G GSG + G G G G G G+G G S + G+G G
Sbjct: 526 SGGGSGGGYGGGSGGGHSGGSG--GGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGG 581
Score = 43.1 bits (100), Expect = 9e-05
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
SG + GG G+ G + GG GG+ G G+ G+ + +G +G G
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGG 575
Query: 81 AGLAAGSGWRRAAGPGERGLE-------DEEDGVPGGNGTGPGIYSY 120
+G GSG G G G +E G GG G G G S+
Sbjct: 576 SGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSH 622
Score = 42.0 bits (97), Expect = 2e-04
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 25 KGGRGGARGSARGGVRGGARGA-SRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGL 83
+G RGG+ GS GG GG G S R YG S G+ G G+ G
Sbjct: 487 RGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGS----GGGSGGGYGGGSGGGH 542
Query: 84 AAGSGWRRAAGPGER--GLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCLVLGG 141
+ GSG + G G G G GG G G G + G G G GG
Sbjct: 543 SGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGG 602
Query: 142 ALGALG 147
A G
Sbjct: 603 GEEASG 608
Score = 40.8 bits (94), Expect = 4e-04
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G + GG GG GS RGG G G S YG G S + G+ G + G+
Sbjct: 500 GGSGGGYGGGSGS-RGGSGGSYGGGSGSGGGSGGGYG--GGSGGGHSGGSGGGHSGGSGG 556
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAG 128
GSG +G G G G G +G G G + G G
Sbjct: 557 NYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Score = 36.2 bits (82), Expect = 0.011
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 25 KGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLA 84
+GG+ S G + G RG S R G+ GS G +G G +G
Sbjct: 459 EGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGS-----YGGGGSGGGYGGGSGSR 513
Query: 85 AGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
GSG G G G G GG+G G S + G+G G
Sbjct: 514 GGSGGSYGGGSGSGG--GSGGGYGGGSGGGHSGGSGGGHSGGSGGNYG 559
Score = 34.3 bits (77), Expect = 0.041
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 14 AAAFLCDSGAAKGGRGGARGSAR---------GGVRGGAR---------GASRVRVRPAQ 55
++++L SG GG G+ GS R GG GG R G+SRV R
Sbjct: 7 SSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66
Query: 56 R---YGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNG 112
Y G S +A + G G + G SG ++ G G G G G
Sbjct: 67 GSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGG 126
Query: 113 TGPGIYSYRAWTSGAG 128
G G + + GAG
Sbjct: 127 YGSGFGGFGGFGGGAG 142
Score = 28.9 bits (63), Expect = 1.7
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 27 GRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLR----VAAAGAAAGAAAGAAAG 82
G GG+ G + GG GG AS + G G R + G ++ G G
Sbjct: 64 GGGGSFGYSYGGGSGGGFSASSLG-------GGFGGGSRGFGGASGGGYSSSGGFGGGFG 116
Query: 83 LAAGSGWRRAAGPGERGLEDEEDGVPGGNG 112
+G G+ G G G G GG+G
Sbjct: 117 GGSGGGFGGGYGSGFGGFGGFGGGAGGGDG 146
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 44.3 bits (103), Expect = 4e-05
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 32 RGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRR 91
RG G GGA GAS PA+ P A A G AAGA+ GL AG+G
Sbjct: 118 RGGPGAGAAGGAAGAS-----PAEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAG--- 169
Query: 92 AAGPGERGL 100
AAG G GL
Sbjct: 170 AAGCGGEGL 178
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 43.5 bits (101), Expect = 7e-05
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
+G GG GG G + GG GG GA G G+ AAA AAA AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGA-----------GGAGAGAVAAAAAAAAAAAGGGG 296
Query: 81 AGLAAGS--GWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G GS G+ + P ++G GG GPG
Sbjct: 297 GGGYGGSSAGYGVLSSPRQQG---------GGMMMGPG 325
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/110 (37%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GA GG GG G G GG GA GA G+ A A AAA AAA AAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA-----------GAGGAG---AGAVAAAAAAAAAAA 292
Query: 82 GLAAGSGW-RRAAGPGERGLEDEEDG--VPGGNGTGPGIYSYRAWTSGAG 128
G G G+ +AG G ++ G + G G G S A S AG
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Score = 29.6 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 57 YGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
Y PG+ G G + G G AG+G AG G G G G G
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAG---GAGAGAVAAAAAAAAAAAGGGGGGG 299
Query: 117 IYSYRAWTSGAGPTRGPR 134
Y ++G G PR
Sbjct: 300 ---YGGSSAGYGVLSSPR 314
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 43.5 bits (101), Expect = 7e-05
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
+G GG GG G + GG GG GA G G+ AAA AAA AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGA-----------GGAGAGAVAAAAAAAAAAAGGGG 296
Query: 81 AGLAAGS--GWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G GS G+ + P ++G GG GPG
Sbjct: 297 GGGYGGSSAGYGVLSSPRQQG---------GGMMMGPG 325
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/110 (37%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GA GG GG G G GG GA GA G+ A A AAA AAA AAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA-----------GAGGAG---AGAVAAAAAAAAAAA 292
Query: 82 GLAAGSGW-RRAAGPGERGLEDEEDG--VPGGNGTGPGIYSYRAWTSGAG 128
G G G+ +AG G ++ G + G G G S A S AG
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Score = 29.6 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 57 YGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
Y PG+ G G + G G AG+G AG G G G G G
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAG---GAGAGAVAAAAAAAAAAAGGGGGGG 299
Query: 117 IYSYRAWTSGAGPTRGPR 134
Y ++G G PR
Sbjct: 300 ---YGGSSAGYGVLSSPR 314
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 43.5 bits (101), Expect = 7e-05
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
+G GG GG G + GG GG GA G G+ AAA AAA AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGA-----------GGAGAGAVAAAAAAAAAAAGGGG 296
Query: 81 AGLAAGS--GWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G GS G+ + P ++G GG GPG
Sbjct: 297 GGGYGGSSAGYGVLSSPRQQG---------GGMMMGPG 325
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/110 (37%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GA GG GG G G GG GA GA G+ A A AAA AAA AAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA-----------GAGGAG---AGAVAAAAAAAAAAA 292
Query: 82 GLAAGSGW-RRAAGPGERGLEDEEDG--VPGGNGTGPGIYSYRAWTSGAG 128
G G G+ +AG G ++ G + G G G S A S AG
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Score = 29.6 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 57 YGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
Y PG+ G G + G G AG+G AG G G G G G
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAG---GAGAGAVAAAAAAAAAAAGGGGGGG 299
Query: 117 IYSYRAWTSGAGPTRGPR 134
Y ++G G PR
Sbjct: 300 ---YGGSSAGYGVLSSPR 314
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 42.7 bits (99), Expect = 1e-04
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 25/113 (22%)
Query: 24 AKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGL 83
+KGGR R ++ G + GA +AAAGAA GAAAG A
Sbjct: 7 SKGGRKNKRANSSGDEQENGAGA-------------------LAAAGAA-GAAAGGALAA 46
Query: 84 AAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLC 136
AAG G A PG G GG GTG + A + AG + C
Sbjct: 47 AAGCGAAAAGAPGAGGAAG-----AGGAGTGAANAAAAAGAAAAGDAKNEAPC 94
Score = 34.7 bits (78), Expect = 0.032
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 20 DSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGA------AA 73
++GA GA G+A GG A G A GAPG+ A GA AA
Sbjct: 24 ENGAGALAAAGAAGAAAGGALAAAAGCG------AAAAGAPGAGGAAGAGGAGTGAANAA 77
Query: 74 GAAAGAAAG 82
AA AAAG
Sbjct: 78 AAAGAAAAG 86
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 42.4 bits (98), Expect = 2e-04
Identities = 44/146 (30%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 1 MNWAPATCWALLLAAA-------FLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRP 53
M A A A AAA F + AA GG +A A + P
Sbjct: 35 MEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHP 94
Query: 54 AQRY--------GAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGP--GERGLEDE 103
A APG + AAA AAA AAA AAA A+ SG AGP E +
Sbjct: 95 APLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCS 154
Query: 104 EDGVPGGNGTGPGIYSYRAWTSGAGP 129
+ +GP Y + SG P
Sbjct: 155 PCSAAAQSSSGPAALPYGYFGSGYYP 180
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 42.4 bits (98), Expect = 2e-04
Identities = 42/127 (33%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 20 DSGAAKGGRGGA------RGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
DS +GG+G A G R G RGG RG R R + A R G V G
Sbjct: 29 DSAIEQGGQGSALAPSPVSGVRREGARGGGRG--RGRWKQAGRGGG------VCGRGRGR 80
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG------IYSYRAWTSGA 127
G G G G G + G G G + G GG G+G G + + ++G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSGGSGLGG----DGGGCGGGGSGGGGAPRREPVPFPSGSAGP 136
Query: 128 GPTRGPR 134
GP RGPR
Sbjct: 137 GP-RGPR 142
Score = 39.3 bits (90), Expect = 0.001
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 25 KGGRGGA---RGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
+ GRGG RG RG RG RG R R RP G G + G A
Sbjct: 66 QAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDG 106
+ SG +AGPG RG E G
Sbjct: 126 PVPFPSG---SAGPGPRGPRATESG 147
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 42.4 bits (98), Expect = 2e-04
Identities = 42/127 (33%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 20 DSGAAKGGRGGA------RGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
DS +GG+G A G R G RGG RG R R + A R G V G
Sbjct: 29 DSAIEQGGQGSALAPSPVSGVRREGARGGGRG--RGRWKQAGRGGG------VCGRGRGR 80
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG------IYSYRAWTSGA 127
G G G G G + G G G + G GG G+G G + + ++G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSGGSGLGG----DGGGCGGGGSGGGGAPRREPVPFPSGSAGP 136
Query: 128 GPTRGPR 134
GP RGPR
Sbjct: 137 GP-RGPR 142
Score = 39.3 bits (90), Expect = 0.001
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 25 KGGRGGA---RGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
+ GRGG RG RG RG RG R R RP G G + G A
Sbjct: 66 QAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDG 106
+ SG +AGPG RG E G
Sbjct: 126 PVPFPSG---SAGPGPRGPRATESG 147
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 68 AAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGT-GPGIYS 119
AA AAA AAAGAA G +G G RR PG G + +G PGG G G G+ S
Sbjct: 2 AAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGG--EAGEGAPGGAGDYGNGLES 52
Score = 26.6 bits (57), Expect = 8.6
Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 12 LLAAAFLCDSGAAKGGRG-----------GARGSARGGVRGGA----RGASRVRVRPAQR 56
+ AAA + A GGRG GA G A G GGA G + P +
Sbjct: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL 60
Query: 57 YGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTG 114
P A G A G GSG PG + E+E V G G G
Sbjct: 61 LLEPEPEPEPEEEPPRPRAPPG-APGPGPGSG-----APGSQEEEEEPGLVEGDPGDG 112
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 42.0 bits (97), Expect = 2e-04
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 22 GAAKGGRGGARG-SARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
G++ GG GG G S+ GG GG+ G YG SS G G+++G
Sbjct: 481 GSSGGGHGGGHGGSSGGGYGGGSSGGGS----SGGGYGGGSSS------GGHGGSSSGGY 530
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPR 134
G ++G G G G G GG+ +G G S + + G ++GPR
Sbjct: 531 GGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSG-GHKSSSSGSVGESSSKGPR 583
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 20 DSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGA 79
+ + GGRGG GS GG GG+ G G+ G G++ G G
Sbjct: 456 EGSSGGGGRGG--GSFGGGYGGGSSGG-----------GSSGGGHGGGHGGSSGGGYGGG 502
Query: 80 AAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
++G SG G G G GG +G G Y +SG G + G
Sbjct: 503 SSG-GGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSG 554
Score = 28.9 bits (63), Expect = 1.7
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 22 GAAKGGRGG---ARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAG 78
G + GG G +RGS+ GG GG+ G YG G G G+ G
Sbjct: 46 GFSSGGFSGGSFSRGSSGGGCFGGSSGG----------YGGLG--------GFGGGSFRG 87
Query: 79 AAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
+ + G + + G G G G GG G G G
Sbjct: 88 SYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGG 125
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 42.0 bits (97), Expect = 2e-04
Identities = 34/77 (44%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
S A GG GG A GA GA+ P G PG AAA AAA AAA AA
Sbjct: 207 SCGANGGGGGGPSPA------GAPGAA----GPGGPGGEPGKG--GAAAAAAAAAAAAAA 254
Query: 81 AGLAAGSGWRRAAGPGE 97
A AA G A GPG+
Sbjct: 255 AAAAAAGGLAAAGGPGQ 271
Score = 38.5 bits (88), Expect = 0.002
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 22 GAAKGGRGG-----ARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAA 76
GA GG GG A G+A G GG G GA ++ AAA AAA AA
Sbjct: 209 GANGGGGGGPSPAGAPGAAGPGGPGGEPGKG----------GAAAAAAAAAAAAAAAAAA 258
Query: 77 AGAAAGLAAGSGWRRAAGPG 96
A A G G A GPG
Sbjct: 259 AAGGLAAAGGPGQGWAPGPG 278
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 42.0 bits (97), Expect = 2e-04
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
S AA GG GG RGS+ GG G + G+S YG+ G G+ +G
Sbjct: 514 SKAAFGGSGG-RGSSSGG--GYSSGSSS--------YGSGGRQSGSRGGSGGGGSISGGG 562
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
G GSG R +G G +G GG G+G G +S + G + G
Sbjct: 563 YGSGGGSGGRYGSGGGSKGGSIS----GGGYGSGGGKHSSGGGSRGGSSSGG 610
Score = 35.4 bits (80), Expect = 0.019
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
SG++ G GG + +RGG GG + YG+ G S +G + + +
Sbjct: 534 SGSSSYGSGGRQSGSRGGSGGGGSISGG-------GYGSGGGSGGRYGSGGGSKGGSISG 586
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNG 112
G +G G + ++G G RG G G G
Sbjct: 587 GGYGSGGG-KHSSGGGSRGGSSSGGGYGSGGG 617
Score = 34.3 bits (77), Expect = 0.041
Identities = 41/139 (29%), Positives = 46/139 (33%), Gaps = 31/139 (22%)
Query: 19 CDSGAAKGGRGGARGSARGG--VRGGARGASRVRVRPAQRYGAPGS-------------- 62
C S GG GG RG + G V GG+R S R+G G
Sbjct: 7 CKSRGRGGGGGGFRGFSSGSAVVSGGSR-RSTSSFSCLSRHGGGGGGFGGGGFGSRSLVG 65
Query: 63 -------SLRVAAAGAAAGAAAG-AAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTG 114
S+ VA G GAA G G G G G G G G GG G G
Sbjct: 66 LGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGFSG------GGFGGGGFG 119
Query: 115 PGIYSYRAWTSGAGPTRGP 133
G + G G GP
Sbjct: 120 GGRFGGFGGPGGVGGLGGP 138
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 41.6 bits (96), Expect = 3e-04
Identities = 47/123 (38%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GA + G+A GV GG V G PG V AG AA AAA AA
Sbjct: 566 GALAAAKAAKYGAAVPGVLGGLGALGGV--------GIPGG---VVGAGPAAAAAAAKAA 614
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTG--PGIYSYRAWTSGAGPTRGPRLCLVL 139
AA G AAG G GL GVPG G G P + +A GA G VL
Sbjct: 615 AKAAQFGLVGAAGLG--GLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLGG-----VL 667
Query: 140 GGA 142
GGA
Sbjct: 668 GGA 670
Score = 39.3 bits (90), Expect = 0.001
Identities = 39/104 (37%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 14 AAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
AAA AAK G G A GV G GA V P G G +A G A
Sbjct: 254 AAAAAAAKAAAKFGAGAA------GVLPGVGGAGVPGV-PGAIPGIGG----IAGVGTPA 302
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGI 117
AAA AAA AA G PG G GVPG G G+
Sbjct: 303 AAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGV 346
Score = 35.0 bits (79), Expect = 0.024
Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 14 AAAFLCDSGAAKG-GRGGARGSARG-GVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGA 71
AAA G G G G A G GV G A V V P APG +
Sbjct: 445 AAAKAAKYGLVPGVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVGV-APGVGVAPGIGPG 503
Query: 72 AAGAAAGAAAGLAAGSGWRRAA--GPGERGLEDEEDGVPG--------GNGTGPGIYSYR 121
AAA +AA +AA + R AA G G GL GVPG G G G G+ +
Sbjct: 504 GVAAAAKSAAKVAAKAQLRAAAGLGAGIPGL-GVGVGVPGLGVGAGVPGLGVGAGVPGFG 562
Query: 122 AWTSGAGPTRGPRLCLVLGGALGALGLL 149
A + + + G LG LG L
Sbjct: 563 AVPGALAAAKAAKYGAAVPGVLGGLGAL 590
Score = 32.0 bits (71), Expect = 0.20
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 10 ALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAA 69
A AAA GAA G G G G V G V V A PG+ + AA
Sbjct: 305 AAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAV 364
Query: 70 -GAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGI 117
G + AA AA AA G R G G G+ G G G G G+
Sbjct: 365 PGVVSPEAAAKAAAKAAKYGARPGVGVG--GIPTYGVGAGGFPGFGVGV 411
Score = 27.7 bits (60), Expect = 3.9
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 57 YGAPGSSLRVAAAGAAAGA-----AAGAAAGLAAGSGWRRAAG--PGERGLEDEEDGVPG 109
YG G + AG G AA AAA AA AAG PG G GVPG
Sbjct: 230 YGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGA-----GVPG 284
Query: 110 GNGTGPGI 117
G PGI
Sbjct: 285 VPGAIPGI 292
Score = 27.3 bits (59), Expect = 5.0
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 41 GGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGL 100
GG GA A + G P + A AAA A A A G A G G G+
Sbjct: 233 GGVAGA-------AGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGV 285
Query: 101 EDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCLVLGG 141
G+ G G G + A + G LV GG
Sbjct: 286 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGG 326
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 41.6 bits (96), Expect = 3e-04
Identities = 47/123 (38%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
GA + G+A GV GG V G PG V AG AA AAA AA
Sbjct: 585 GALAAAKAAKYGAAVPGVLGGLGALGGV--------GIPGG---VVGAGPAAAAAAAKAA 633
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTG--PGIYSYRAWTSGAGPTRGPRLCLVL 139
AA G AAG G GL GVPG G G P + +A GA G VL
Sbjct: 634 AKAAQFGLVGAAGLG--GLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLGG-----VL 686
Query: 140 GGA 142
GGA
Sbjct: 687 GGA 689
Score = 39.3 bits (90), Expect = 0.001
Identities = 39/104 (37%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 14 AAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
AAA AAK G G A GV G GA V P G G +A G A
Sbjct: 254 AAAAAAAKAAAKFGAGAA------GVLPGVGGAGVPGV-PGAIPGIGG----IAGVGTPA 302
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGI 117
AAA AAA AA G PG G GVPG G G+
Sbjct: 303 AAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGV 346
Score = 35.4 bits (80), Expect = 0.019
Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 14 AAAFLCDSGAAKG-GRGGARGSARG-GVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGA 71
AAA G G G G A G GV G A V V P APG +
Sbjct: 464 AAAKAAQFGLVPGVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVGV-APGVGVAPGIGPG 522
Query: 72 AAGAAAGAAAGLAAGSGWRRAA--GPGERGLEDEEDGVPG--------GNGTGPGIYSYR 121
AAA +AA +AA + R AA G G GL GVPG G G G G+ +
Sbjct: 523 GVAAAAKSAAKVAAKAQLRAAAGLGAGIPGL-GVGVGVPGLGVGAGVPGLGVGAGVPGFG 581
Query: 122 AWTSGAGPTRGPRLCLVLGGALGALGLL 149
A + + + G LG LG L
Sbjct: 582 AVPGALAAAKAAKYGAAVPGVLGGLGAL 609
Score = 32.0 bits (71), Expect = 0.20
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 10 ALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAA 69
A AAA GAA G G G G V G V V A PG+ + AA
Sbjct: 305 AAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAV 364
Query: 70 -GAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGI 117
G + AA AA AA G R G G G+ G G G G G+
Sbjct: 365 PGVVSPEAAAKAAAKAAKYGARPGVGVG--GIPTYGVGAGGFPGFGVGV 411
Score = 31.6 bits (70), Expect = 0.27
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G GG G G GG+ G A G V P G PG + A AAA AA
Sbjct: 398 GVGAGGFPGF-GVGVGGIPGVA-GVPGVGGVPGVG-GVPGVGISPEAQAAAAAKAAKYGV 454
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGI 117
G A + + AA + GL GV G G PG+
Sbjct: 455 GTPAAAAAKAAAKAAQFGLVPGV-GVAPGVGVAPGV 489
Score = 27.7 bits (60), Expect = 3.9
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 57 YGAPGSSLRVAAAGAAAGA-----AAGAAAGLAAGSGWRRAAG--PGERGLEDEEDGVPG 109
YG G + AG G AA AAA AA AAG PG G GVPG
Sbjct: 230 YGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGA-----GVPG 284
Query: 110 GNGTGPGI 117
G PGI
Sbjct: 285 VPGAIPGI 292
Score = 27.3 bits (59), Expect = 5.0
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 41 GGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGL 100
GG GA A + G P + A AAA A A A G A G G G+
Sbjct: 233 GGVAGA-------AGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGV 285
Query: 101 EDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCLVLGG 141
G+ G G G + A + G LV GG
Sbjct: 286 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGG 326
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 41.6 bits (96), Expect = 3e-04
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 24 AKGGR-GGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAG 82
A+GGR GG + RGG GG G R G SS G G +G
Sbjct: 725 ARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP- 783
Query: 83 LAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAG--PTRGPRLCLVLG 140
G G G G R E G+ GG+G P +G G P GP G
Sbjct: 784 -HEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGP------G 836
Query: 141 GALGALGLLRP 151
G++G G RP
Sbjct: 837 GSMGGSGGHRP 847
Score = 30.8 bits (68), Expect = 0.46
Identities = 36/130 (27%), Positives = 42/130 (32%), Gaps = 20/130 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G +GG G G G RGG G P R GA G + G
Sbjct: 690 GPMRGGPGPGPGPYHRG-RGGRGGNEPPPPPPPFR-------------GARGGRSGGGPP 735
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCLVLGG 141
G G G G R E G+ +G P SG P GP GG
Sbjct: 736 NGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGP------GG 789
Query: 142 ALGALGLLRP 151
++G G RP
Sbjct: 790 SMGGGGGHRP 799
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 41.2 bits (95), Expect = 3e-04
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
+G A GG G + + R GV+GG R ++ R P AP SS ++G++ G +G+A
Sbjct: 12 AGGATGG--GPQAARRSGVQGGQRNSTSARAPPPPPL-APSSSSSSGSSGSSGGGGSGSA 68
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGG 110
GS A G R + G GG
Sbjct: 69 GQPTLGS--MLAVGSAARRASERAGGRAGG 96
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 41.2 bits (95), Expect = 3e-04
Identities = 41/148 (27%), Positives = 50/148 (33%), Gaps = 29/148 (19%)
Query: 26 GGRGGARGSARGGV---RGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAG 82
GG GG G GGV + G R S R G+P SS + G +A GA G
Sbjct: 192 GGGGGGGGGGGGGVSSEKSGFRVPSATCQPFTPRTGSPSSSASACSPGGMLSSAGGAPEG 251
Query: 83 ------LAAGSGWRRAAGPGERG-------------------LEDEEDGVPGGNGTGPGI 117
G G + G G + DG PGG G
Sbjct: 252 KDDKKDTDVGGGGKGTGGASAEGGPTGLAHGRISCGGGINVDVNQHPDGGPGGKALGSDC 311
Query: 118 YSYRAWTSGAGPTRGPRLCLVLGGALGA 145
+SG+GP+ P VLG L A
Sbjct: 312 GGSSGSSSGSGPS-APTSSSVLGSGLVA 338
Score = 30.0 bits (66), Expect = 0.78
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 20 DSGAAKGGRGGARGSARGGVRGGARG----ASRVRVRPAQR-YGAPGSSLRVAAAGAAAG 74
D+ GG+G SA GG G A G + V Q G PG G A G
Sbjct: 257 DTDVGGGGKGTGGASAEGGPTGLAHGRISCGGGINVDVNQHPDGGPG--------GKALG 308
Query: 75 AAAGAAAGLAAGSG 88
+ G ++G ++GSG
Sbjct: 309 SDCGGSSGSSSGSG 322
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.8 bits (94), Expect = 4e-04
Identities = 43/131 (32%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G + G G RG R GARGA GAPG AGA AA
Sbjct: 653 GKGEKGEPGLRGEIGNPGRDGARGAPGA-------VGAPG------PAGATGDRGEAGAA 699
Query: 82 GLAAGSGWRRAAGPGERGLEDEEDGVPGGNG-TGPGIYSYRAWTSGAGPTRGPRLCLVLG 140
G A +G R PGERG E G G NG GP + + G +GP+ +
Sbjct: 700 GPAGPAGPR--GSPGERG----EVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVV 753
Query: 141 GALGALGLLRP 151
G G +G P
Sbjct: 754 GPTGPVGAAGP 764
Score = 40.0 bits (92), Expect = 8e-04
Identities = 42/130 (32%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 27 GRGGARGSARGGVRGGARGASRVR--------VRPAQRYGAPGSSLRVAAAGAAAGAAAG 78
GR GARG+ G GA+ R PA G+PG V AG A
Sbjct: 670 GRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPA 729
Query: 79 AAAGLAAGSGWRRAAGP-GERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCL 137
AAG G R A GP GE G+ V GP A + G G GP
Sbjct: 730 GAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG---GPPGMT 786
Query: 138 VLGGALGALG 147
GA G G
Sbjct: 787 GFPGAAGRTG 796
Score = 30.8 bits (68), Expect = 0.46
Identities = 40/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 27 GRGGARGSARG-GVRG--GARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGL 83
G G +G GV+G GA G + + R G PG RV A G A + + G
Sbjct: 184 GLDGLKGQPGAPGVKGEPGAPGENGTPGQTGAR-GLPGERGRVGAPGPAGARGSDGSVGP 242
Query: 84 AAGSGWRRAAG----PGERGLEDEEDGVPGGNGTGP----GIYSYRAWTSGAGPTRGPRL 135
+G +AG PG G + E V GP G + GP P
Sbjct: 243 VGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPG- 301
Query: 136 CLVLGGALGALGL 148
L GA GA GL
Sbjct: 302 ANGLTGAKGAAGL 314
Score = 30.4 bits (67), Expect = 0.60
Identities = 40/130 (30%), Positives = 46/130 (35%), Gaps = 18/130 (13%)
Query: 25 KGGRGGARGSARGGVRG--GARGASRVRVRPAQR--YGAPGSSLRVAAAGAAAGAAAGAA 80
KG G A + G G G GA + P R G PG + V G A A
Sbjct: 846 KGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGA 905
Query: 81 AGLAAGSGWRRAAG-PGERGLEDE--EDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCL 137
G G G PGE G + DG PG +G PG R + GP
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQ-PGHKGERGYPGNIGPV------- 957
Query: 138 VLGGALGALG 147
GA GA G
Sbjct: 958 ---GAAGAPG 964
Score = 28.1 bits (61), Expect = 3.0
Identities = 36/127 (28%), Positives = 44/127 (34%), Gaps = 27/127 (21%)
Query: 25 KGGRGGARGSARGGVRG--GARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAG 82
+G RG S G G G+RG P+ G G+ GA A +G
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRG-------PSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640
Query: 83 LAAGSGWRRAAGPGERGLEDEEDGVPGGNGT--GPGIYSYRAWTSGAGPTRGPRLCLVLG 140
L PGERG G+PGG G PG+ G RG +
Sbjct: 641 L-----------PGERGAA----GIPGGKGEKGEPGLRG-EIGNPGRDGARGAPGAVGAP 684
Query: 141 GALGALG 147
G GA G
Sbjct: 685 GPAGATG 691
Score = 26.9 bits (58), Expect = 6.6
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 26 GGRGGARGSARG-GVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLA 84
GG A+ +G G+ G G R P GAPG G A G
Sbjct: 74 GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAA-GAPGPQ------GFQGPAGEPGEPGQT 126
Query: 85 AGSGWRRAAGPGERGLEDEEDGVPGGNG 112
+G R AGP + ED G PG G
Sbjct: 127 GPAGARGPAGPPGKAGEDGHPGKPGRPG 154
Score = 26.6 bits (57), Expect = 8.6
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 27 GRGGARG-SARGGVRG--GARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGL 83
G G RG S G+RG G G R P G G + G A A G
Sbjct: 991 GAVGPRGPSGPQGIRGDKGEPGEKGPRGLP----GLKGHNGLQGLPGIAGHHGDQGAPGS 1046
Query: 84 AAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGP 133
+G R AGP +D G PG G GI + AGP P
Sbjct: 1047 VGPAGPRGPAGPSGPAGKDGRTGHPGTVGPA-GIRGPQGHQGPAGPPGPP 1095
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 40.8 bits (94), Expect = 4e-04
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 20 DSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGA 79
++G++ GG + GS+ GG GG+ G S G+ G S ++ G++ G+++G
Sbjct: 264 NNGSSSGG--SSSGSSSGGSSGGSSGGS-----SGNSGGSRGDSGSESSWGSSTGSSSGN 316
Query: 80 AAGLAAGSGWR--------RAAGPGERGLEDEEDGVPGGNGTGPGIYSY 120
G G+G + A G GE G+++ E T PG++++
Sbjct: 317 HGGSGGGNGHKPGCEKPGNEARGSGESGIQNSE--------TSPGMFNF 357
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
SG GG GS G G+ G + + G+ S ++G ++G ++G +
Sbjct: 237 SGGGSSNSGGGSGSQSGSSGSGSNGDNN---NGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G SG + G G GGNG PG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPG 329
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 68 AAGAAAGAAAGAAAGLAAGSGWRRAAGPGER 98
A G AG AAG+ A G G R A G G R
Sbjct: 54 AIGKEAGGAAGSKVSEALGQGTREAVGTGVR 84
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 40.8 bits (94), Expect = 4e-04
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 20 DSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGA 79
++G++ GG + GS+ GG GG+ G S G+ G S ++ G++ G+++G
Sbjct: 264 NNGSSSGG--SSSGSSSGGSSGGSSGGS-----SGNSGGSRGDSGSESSWGSSTGSSSGN 316
Query: 80 AAGLAAGSGWR--------RAAGPGERGLEDEEDGVPGGNGTGPGIYSY 120
G G+G + A G GE G+++ E T PG++++
Sbjct: 317 HGGSGGGNGHKPGCEKPGNEARGSGESGIQNSE--------TSPGMFNF 357
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
SG GG GS G G+ G + + G+ S ++G ++G ++G +
Sbjct: 237 SGGGSSNSGGGSGSQSGSSGSGSNGDNN---NGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G SG + G G GGNG PG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPG 329
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 68 AAGAAAGAAAGAAAGLAAGSGWRRAAGPGER 98
A G AG AAG+ A G G R A G G R
Sbjct: 54 AIGKEAGGAAGSKVSEALGQGTREAVGTGVR 84
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 40.4 bits (93), Expect = 6e-04
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G++ G GG+ GS GG GG RG+ YG+ GSS +G G
Sbjct: 529 GSSYGSGGGSYGSGGGG--GGGRGS----------YGSGGSSYGSGGGSYGSGGGGGGHG 576
Query: 82 GLAAGS---GWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
+GS G+R +G G G G G G+ G R +SG + G
Sbjct: 577 SYGSGSSSGGYRGGSGGGGGG---SSGGRGSGGGSSGGSIGGRGSSSGGVKSSG 627
Score = 36.2 bits (82), Expect = 0.011
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 21 SGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAA 80
SG G GG G RG G+ G+S + G G +G+++G G +
Sbjct: 534 SGGGSYGSGGGGGGGRGSY--GSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGS 591
Query: 81 AGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPG 116
G GS R +G G G G GG G+ G
Sbjct: 592 GGGGGGSSGGRGSGGGSSG------GSIGGRGSSSG 621
Score = 33.5 bits (75), Expect = 0.070
Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 37 GGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPG 96
GG RGG G YG+ GSS +G G G G +G G
Sbjct: 515 GGSRGGGGGG----------YGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGG 564
Query: 97 ERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAG 128
G G G G+G YR + G G
Sbjct: 565 SYG-SGGGGGGHGSYGSGSSSGGYRGGSGGGG 595
Score = 31.2 bits (69), Expect = 0.35
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 21 SGAAKGGRGG-ARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGA 79
SG GG G GS+ GG RGG+ G G GSS + G ++G G+
Sbjct: 568 SGGGGGGHGSYGSGSSSGGYRGGSGG------------GGGGSSGGRGSGGGSSG---GS 612
Query: 80 AAGLAAGSGWRRAAG 94
G + SG +++G
Sbjct: 613 IGGRGSSSGGVKSSG 627
Score = 28.5 bits (62), Expect = 2.3
Identities = 32/117 (27%), Positives = 37/117 (31%), Gaps = 18/117 (15%)
Query: 19 CDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAG 78
C G G GG GS R V G G+ S+ VA G G
Sbjct: 49 CGGGGGSFGAGGGFGS-RSLVNLG---------------GSKSISISVARGGGRGSGFGG 92
Query: 79 AAAGLAAGSGWRRAAGPGERGLEDEEDG--VPGGNGTGPGIYSYRAWTSGAGPTRGP 133
G G G G G G+ G GG G G G + + G GP P
Sbjct: 93 GYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPP 149
Score = 26.6 bits (57), Expect = 8.6
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 34 SARGGVR-GGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRA 92
S+R G R GG + + QR S+ R G + G AG G+
Sbjct: 6 SSRSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGSR 65
Query: 93 AGPGERGLEDEEDGVPGGNGTGPG 116
+ G + V G G G G
Sbjct: 66 SLVNLGGSKSISISVARGGGRGSG 89
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVR 50
G + GG G RGS+ GGV+ G+S V+
Sbjct: 606 GGSSGGSIGGRGSSSGGVKSSG-GSSSVK 633
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 40.4 bits (93), Expect = 6e-04
Identities = 35/88 (39%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 42 GARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLE 101
GAR A +VR R GA S AA A+ GA A AG A SG +A G E G+E
Sbjct: 448 GARVADKVRKRRKVDEGAGDS-----AAVASGGAQTLALAGSPAPSGHPKA-GHSENGVE 501
Query: 102 DEEDGVPGGNGTGPGIYSYRAWTSGAGP 129
++ +G G PG S S AGP
Sbjct: 502 EDTEGRTGPKEGTPGSPSETPGPSPAGP 529
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 40.4 bits (93), Expect = 6e-04
Identities = 40/121 (33%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 14 AAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
AAA L G +GG+ + + RGG R G RGA R + G + L AAA A
Sbjct: 92 AAAPLPRGGGGRGGQDISLRARRGGTRTGDRGAELTRPQSLLARGLGPNWL--AAAAANQ 149
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRGP 133
G G RA G RG + V G GTG +++ A S RGP
Sbjct: 150 GLGRGRDQPRPGPLPSLRAQEAGRRG-----NAVGGVTGTGSRLHAPGARGSQRPSARGP 204
Query: 134 R 134
R
Sbjct: 205 R 205
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 40.4 bits (93), Expect = 6e-04
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G + GG GG GS+ GG GG G G G S++ + G ++G +G +
Sbjct: 58 GYSGGGCGG--GSSGGGGGGGIGGCG----------GGSGGSVKYSGGGGSSGGGSGCFS 105
Query: 82 GLAAGSGWRRAAGPGERGLEDE--EDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRL-CLV 138
GSG + G G G G G +G G G +S SG G G + C
Sbjct: 106 SGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFS-----SGGGGFSGQAVQCQS 160
Query: 139 LGG 141
GG
Sbjct: 161 YGG 163
Score = 36.6 bits (83), Expect = 0.008
Identities = 36/131 (27%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 20 DSGAAKGGRGGARGSARGG---VRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAA 76
D GG GG GS GG GG G G+ GS + G +G
Sbjct: 15 DCVKTSGGGGGGGGSGGGGCGFFGGGGSGG-----------GSSGSGCGYSGGGGYSGGG 63
Query: 77 AGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTS------GAGPT 130
G + G G G G G + G G +G G G +S S G G +
Sbjct: 64 CGGGSSGGGGGGGIGGCGGGSGG-SVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSS 122
Query: 131 RGPRLCLVLGG 141
G C GG
Sbjct: 123 GGGSGCFSSGG 133
Score = 33.9 bits (76), Expect = 0.054
Identities = 37/150 (24%), Positives = 51/150 (34%), Gaps = 25/150 (16%)
Query: 14 AAAFLCDSGAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAA 73
+ F G + GG G S GG GG G G G S + +
Sbjct: 111 SGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCF--------SSGGGGFSGQAVQCQSYG 162
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGN--GTGPGIY------------- 118
G ++G ++G +G G G G GG+ G+G G
Sbjct: 163 GVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQ 222
Query: 119 -SYRAWTSGAGPTRGPRLCLVLGGALGALG 147
SY +SG G + G C GG G+ G
Sbjct: 223 PSYGGGSSGGGGSGGSG-CFSSGGGGGSSG 251
Score = 29.6 bits (65), Expect = 1.0
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 35/131 (26%)
Query: 21 SGAAKGG------RGGARGSARG------GVRGGARGAS-----------RVRVRPAQRY 57
SG + GG GG GS G G GG+ G S + P Y
Sbjct: 166 SGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSY 225
Query: 58 --------GAPGSSLRVAAAGAAAGAAAGAAAGLAAG---SGWRRAAGPGERGLEDEEDG 106
G+ GS + G + G ++G+ +G SG G G G
Sbjct: 226 GGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSS 285
Query: 107 VPGGNGTGPGI 117
V GG+G+G G+
Sbjct: 286 V-GGSGSGKGV 295
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 40.0 bits (92), Expect = 8e-04
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 26 GGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAA 85
GGRGG G GG RGG G R G G G G G G
Sbjct: 333 GGRGGWGGGGGGGGRGGGGGG-------GGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRG 385
Query: 86 G----------SGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAW 123
G G+ G G RG D G GG G G G YR +
Sbjct: 386 GFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRRY 433
Score = 32.0 bits (71), Expect = 0.20
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 22 GAAKGGRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAA 81
G GG GG G RGG +G R YG G G G G
Sbjct: 370 GGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRG-------YGDPYGGGGGGGG 422
Query: 82 GLAAGSGWRR 91
G G G+RR
Sbjct: 423 GGGGGGGYRR 432
Score = 26.9 bits (58), Expect = 6.6
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 74 GAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAGPTRG 132
G G G G G G G RG G GG G G G W G G RG
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGG-----GWGGGGGGGRG 385
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 26 GGRGGARGSARGGVRGGARG--ASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGL 83
GG G GS GG GG+R AS R + G G +RV G AG+ G G
Sbjct: 26 GGGGFGGGSLSGG--GGSRSISASSARFVSSGSGGGYGGGMRVCGFGGGAGSVFGGGFGG 83
Query: 84 AAGSGWRRAAGPGERGL 100
G G+ G G+ GL
Sbjct: 84 GVGGGFGGGFGGGDGGL 100
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 39.7 bits (91), Expect = 0.001
Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 21 SGAAKGGRGGA------RGSARGG------VRGGARGASRVRVRPAQRYGAPGSSLRVAA 68
+ AA+GG GG RG G + A GA+ + P G P S AA
Sbjct: 129 AAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAA 188
Query: 69 AGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPGGNGTGPGIYSYRAWTSGAG 128
A+ A AAA AA + AA D G GG PG +
Sbjct: 189 GAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKY------ 242
Query: 129 PTRGPRLCLVLGGALG 144
P G L++G A G
Sbjct: 243 PEHGNPAILLMGSANG 258
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,540,821
Number of Sequences: 37866
Number of extensions: 458289
Number of successful extensions: 9268
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 594
Number of HSP's that attempted gapping in prelim test: 4651
Number of HSP's gapped (non-prelim): 3295
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.