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Search of human proteins with 59710085
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|59710085 hypothetical protein LOC146562 [Homo sapiens]
(520 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|59710085 hypothetical protein LOC146562 [Homo sapiens] 1046 0.0
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 45 1e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 43 6e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 43 6e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 43 6e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 43 6e-04
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 43 6e-04
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 43 6e-04
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 42 0.001
gi|20070205 ladinin 1 [Homo sapiens] 42 0.002
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 40 0.005
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 40 0.005
gi|18079216 CASK interacting protein 1 [Homo sapiens] 39 0.015
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 39 0.015
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 39 0.015
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 37 0.033
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 37 0.033
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 37 0.057
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 37 0.057
gi|157785645 SPEG complex locus [Homo sapiens] 37 0.057
gi|109637771 calpastatin isoform l [Homo sapiens] 36 0.075
gi|109637769 calpastatin isoform k [Homo sapiens] 36 0.075
gi|109637767 calpastatin isoform j [Homo sapiens] 36 0.075
gi|109637765 calpastatin isoform i [Homo sapiens] 36 0.075
gi|109637763 calpastatin isoform h [Homo sapiens] 36 0.075
gi|109637761 calpastatin isoform g [Homo sapiens] 36 0.075
gi|109637759 calpastatin isoform f [Homo sapiens] 36 0.075
gi|109637757 calpastatin isoform e [Homo sapiens] 36 0.075
gi|27765085 calpastatin isoform b [Homo sapiens] 36 0.075
gi|109637753 calpastatin isoform a [Homo sapiens] 36 0.075
>gi|59710085 hypothetical protein LOC146562 [Homo sapiens]
Length = 520
Score = 1046 bits (2706), Expect = 0.0
Identities = 520/520 (100%), Positives = 520/520 (100%)
Query: 1 MASNDKGMAPSLGSPWASQMGPWDAILKAVKDQLPSLDSDSPLSDYGEEELFIFQRNQTS 60
MASNDKGMAPSLGSPWASQMGPWDAILKAVKDQLPSLDSDSPLSDYGEEELFIFQRNQTS
Sbjct: 1 MASNDKGMAPSLGSPWASQMGPWDAILKAVKDQLPSLDSDSPLSDYGEEELFIFQRNQTS 60
Query: 61 LIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEG 120
LIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEG
Sbjct: 61 LIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEG 120
Query: 121 RDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGD 180
RDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGD
Sbjct: 121 RDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGD 180
Query: 181 PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAES 240
PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAES
Sbjct: 181 PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAES 240
Query: 241 APRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVWWAADHRQVQ 300
APRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVWWAADHRQVQ
Sbjct: 241 APRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVWWAADHRQVQ 300
Query: 301 DRMVPSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGP 360
DRMVPSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGP
Sbjct: 301 DRMVPSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGP 360
Query: 361 GPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGAS 420
GPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGAS
Sbjct: 361 GPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGAS 420
Query: 421 PSSLGLRTCTGKSQLLQQLRAFQKGTAQPELPASKGPAGGRAQAPEDTAGSRTGRKQHMK 480
PSSLGLRTCTGKSQLLQQLRAFQKGTAQPELPASKGPAGGRAQAPEDTAGSRTGRKQHMK
Sbjct: 421 PSSLGLRTCTGKSQLLQQLRAFQKGTAQPELPASKGPAGGRAQAPEDTAGSRTGRKQHMK 480
Query: 481 LCAKGQSAQARLPRGRPRALGDVPEPGAAREALMPPLEQL 520
LCAKGQSAQARLPRGRPRALGDVPEPGAAREALMPPLEQL
Sbjct: 481 LCAKGQSAQARLPRGRPRALGDVPEPGAAREALMPPLEQL 520
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 45.4 bits (106), Expect = 1e-04
Identities = 77/386 (19%), Positives = 147/386 (38%), Gaps = 66/386 (17%)
Query: 66 SEELAEDPADGDKSRAWVAAAEESLPEPVLV---PAELATEPGCRQNTRTKDASSQEGRD 122
S + +D + A ++++P+ +V P + AT P R+++ ++D+SS E +
Sbjct: 219 SSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTP-TRKSSSSEDSSSDEEEE 277
Query: 123 PGRPFESS-GEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGDP 181
+P ++ G S++ + PP+ + G+Q P + + + E
Sbjct: 278 QKKPMKNKPGPYSSVPPPSAPPPK-----------KSLGTQPPKKAVEKQQPVESSEDSS 326
Query: 182 KAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAESA 241
S+ ++ +A+ + + +K + + SD EAP A +
Sbjct: 327 DESDSSSEEEKKPPTKAVVS--KATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTT 384
Query: 242 PRS--------KMPLVEPPEGP--PVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVW 291
S K P V+P P PV Q+L D S + +E++ + T
Sbjct: 385 KNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKAD----SSSSEEESSSSEEEKT-- 438
Query: 292 WAADHRQVQDRMVPSAHNRLMEQLAL-LCTTQSKASACARKVPADTPQDTKEADSGSRCA 350
+MV + + + AL L Q+ + +D+ +E + S+ A
Sbjct: 439 ---------KKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSA 489
Query: 351 SRKQGSQAGPGP---QLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEE 407
+K+ + G + A + AES S+S SS DS EEEE
Sbjct: 490 VKKKPQKVAGGAAPSKPASAKKGKAES-------------------SNSSSSDDSSEEEE 530
Query: 408 EEMAALGDAEGASPSSLGLRTCTGKS 433
E++ G +P + G T ++
Sbjct: 531 EKLKGKGSPRPQAPKANGTSALTAQN 556
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 228 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 287
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 288 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 341
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 342 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 388
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 389 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 448
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 449 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 508
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 509 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 566
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 567 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 614
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 615 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 660
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 661 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 719
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 720 ARAPSAKGTISAPG 733
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 263 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 314
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 374
Query: 509 A 509
A
Sbjct: 375 A 375
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 305 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 364
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 365 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 418
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 419 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 465
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 466 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 525
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 526 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 585
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 586 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 643
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 644 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 691
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 692 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 737
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 738 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 796
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 797 ARAPSAKGTISAPG 810
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 340 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 391
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 451
Query: 509 A 509
A
Sbjct: 452 A 452
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGT----A 447
PE S SS + E EEE A AS L +R + + KGT A
Sbjct: 266 PEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPA----------KGTPGKGA 315
Query: 448 QPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPG 507
P P G + +A + S + ++ + +A+A L + +A G + G
Sbjct: 316 TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL---QAKASGKTSQVG 372
Query: 508 AA 509
AA
Sbjct: 373 AA 374
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 305 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 364
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 365 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 418
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 419 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 465
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 466 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 525
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 526 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 585
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 586 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 643
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 644 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 691
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 692 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 737
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 738 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 796
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 797 ARAPSAKGTISAPG 810
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 340 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 391
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 451
Query: 509 A 509
A
Sbjct: 452 A 452
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGT----A 447
PE S SS + E EEE A AS L +R + + KGT A
Sbjct: 266 PEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPA----------KGTPGKGA 315
Query: 448 QPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPG 507
P P G + +A + S + ++ + +A+A L + +A G + G
Sbjct: 316 TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL---QAKASGKTSQVG 372
Query: 508 AA 509
AA
Sbjct: 373 AA 374
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 228 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 287
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 288 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 341
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 342 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 388
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 389 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 448
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 449 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 508
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 509 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 566
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 567 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 614
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 615 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 660
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 661 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 719
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 720 ARAPSAKGTISAPG 733
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 263 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 314
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 374
Query: 509 A 509
A
Sbjct: 375 A 375
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 305 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 364
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 365 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 418
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 419 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 465
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 466 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 525
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 526 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 585
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 586 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 643
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 644 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 691
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 692 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 737
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 738 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 796
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 797 ARAPSAKGTISAPG 810
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 340 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 391
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 451
Query: 509 A 509
A
Sbjct: 452 A 452
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGT----A 447
PE S SS + E EEE A AS L +R + + KGT A
Sbjct: 266 PEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPA----------KGTPGKGA 315
Query: 448 QPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPG 507
P P G + +A + S + ++ + +A+A L + +A G + G
Sbjct: 316 TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL---QAKASGKTSQVG 372
Query: 508 AA 509
AA
Sbjct: 373 AA 374
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 43.1 bits (100), Expect = 6e-04
Identities = 117/554 (21%), Positives = 184/554 (33%), Gaps = 103/554 (18%)
Query: 9 APSLGSPWASQM----GPWDAILKAVKDQLPSLDSDSPLSDYGEEE---------LFIFQ 55
AP+ G+P G A+ K P DS+S + + E L
Sbjct: 305 APAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKA 364
Query: 56 RNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDA 115
+TS + S E P G A A P + A+ Q++ +
Sbjct: 365 SGKTSQVGAASAPAKESPRKG------AAPAPPGKTGPAVAKAQAGKREEDSQSSSEESD 418
Query: 116 SSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLS 175
S +E +P + +V A A+E PR KG+ P A
Sbjct: 419 SEEEAPAQAKPSGKAPQVRAASAPAKESPR-------------KGAAPAPPRKTGPAAAQ 465
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIE----TDILQKVTRDACGPTSSDKGGVK 231
G + + S++ + +R AL ++ + ++ + GP G V
Sbjct: 466 VQVGKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVP 525
Query: 232 EAPCHAA----------ESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDN 281
A E + S + +G ++ + L +ILQ+
Sbjct: 526 PGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPA 585
Query: 282 QG---NRAPGTVWWAA----DHRQVQDRMVPSAHNRLMEQLALLCTTQSKAS-------A 327
+G P V A D+ + + SA + E A + Q+K + A
Sbjct: 586 KGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE--EAPAAMTAAQAKPALKIPQTKA 643
Query: 328 CARKVPADTPQDTKEADSGSRCASRKQG---SQAGPGPQLAQGMRLNAESPTIFIDLRQM 384
C +K G++ A RK G S AG P +A G + AE
Sbjct: 644 CPKKTNTTASAKVAPVRVGTQ-APRKAGTATSPAGSSPAVAGGTQRPAE----------- 691
Query: 385 ELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQK 444
+SSS SDSEEE+ +G A+ GL+ K+ + + +
Sbjct: 692 --------DSSSSEESDSEEEKTGLAVTVGQAKSVGK---GLQV---KAASVPVKGSLGQ 737
Query: 445 GTAQPELPASKGP--AGGRAQAPEDTAGSR--------TGRKQHMKLCAKGQSAQARLPR 494
GTA P LP GP +A+ ED+ S +K K A+A
Sbjct: 738 GTA-PVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAA 796
Query: 495 GR-PRALGDVPEPG 507
R P A G + PG
Sbjct: 797 ARAPSAKGTISAPG 810
Score = 37.0 bits (84), Expect = 0.044
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 393 ESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELP 452
ESSS SSDSEEE A L S +G + K + +KG A P P
Sbjct: 340 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK-------ESPRKGAA-PAPP 391
Query: 453 ASKGPAGGRAQA---PEDTAGSRTGRKQHMKLCAKGQ-SAQARLPRGRPRALGDVPEPGA 508
GPA +AQA ED+ S + A+ + S +A R + P GA
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGA 451
Query: 509 A 509
A
Sbjct: 452 A 452
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGT----A 447
PE S SS + E EEE A AS L +R + + KGT A
Sbjct: 266 PEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPA----------KGTPGKGA 315
Query: 448 QPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPG 507
P P G + +A + S + ++ + +A+A L + +A G + G
Sbjct: 316 TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL---QAKASGKTSQVG 372
Query: 508 AA 509
AA
Sbjct: 373 AA 374
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 42.0 bits (97), Expect = 0.001
Identities = 87/413 (21%), Positives = 141/413 (34%), Gaps = 48/413 (11%)
Query: 66 SEELAEDPADGDKSRAWVAAAEESLPEPVLVP-AELATEPGCRQNTRTKDASSQEGRDPG 124
SE + A+GD A A ES E V P AE +P ++D + E
Sbjct: 1848 SEGVEAPEAEGDAQEAEGEAQPES--EDVEAPEAEGEAQP------ESEDVETPEAEWEV 1899
Query: 125 RPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWD----PQAEATLSCHEGD 180
+P E A+ +E + T+G P + +AE EG
Sbjct: 1900 QPESEGAEAPEAEKEAQPETESVE------ALETEGEDEPESEGAEAQEAEEAAQEAEGQ 1953
Query: 181 PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAE- 239
+ E SQE+ E + +E ++ + P S D EAP E
Sbjct: 1954 TQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDV----EAPEAEGEM 2009
Query: 240 -SAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAG--QEDNQGNRAPGTVWWAADH 296
A P + E P + EA +++ Q G Q ++ G AP A +
Sbjct: 2010 QEAEEEAQPESDGVEAQP--KSEGEEAQEVEGETQKTEGDAQPESDGVEAPE----AEEE 2063
Query: 297 RQVQDRMVPSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGS 356
Q + V A + + +++ A + P+ EA + +
Sbjct: 2064 AQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEG 2123
Query: 357 QAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALG-- 414
+A P + + E+ + + PES + ++EEE + E+ +
Sbjct: 2124 EAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAP 2183
Query: 415 DAEG-ASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELPASKGPAGGRAQAPE 466
+AEG A P S G+ + G AQPEL + P PE
Sbjct: 2184 EAEGEAQPESEGIEAPEAE------------GEAQPELEGVEAPEAEEEAQPE 2224
Score = 36.6 bits (83), Expect = 0.057
Identities = 89/420 (21%), Positives = 152/420 (36%), Gaps = 62/420 (14%)
Query: 120 GRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWD----PQAEATLS 175
G+ G GE +A ++ P +G G + +G P + P+AE
Sbjct: 1805 GQGSGHEDNLQGEAAA---GGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQ 1861
Query: 176 CHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPC 235
EG+ A ES + A E E++ ++ T +A + G EAP
Sbjct: 1862 EAEGE--------AQPESEDVEAPEAEGEAQPESEDVE--TPEAEWEVQPESEGA-EAPE 1910
Query: 236 HAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVWWAAD 295
E+ P ++ EG + EA + ++ Q GQ + +
Sbjct: 1911 AEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESE--------VIE 1962
Query: 296 HRQVQDRMVPSAHNRLMEQLALLCTTQ-SKASACARKVPADTPQDTKEADSGSRCAS-RK 353
++ ++ P + + +E L + TQ ++ A + P+ E A
Sbjct: 1963 SQEAEEEAQPESED--VEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPES 2020
Query: 354 QGSQAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAAL 413
G +A P + + + E+ D + PES + ++EEE +E +
Sbjct: 2021 DGVEAQPKSEGEEAQEVEGETQKTEGDAQ---------PESDGVEAPEAEEEAQEAEGEV 2071
Query: 414 GDAEG-----------------ASPSSLGLRT--CTGKSQLLQQLRAFQ-KGTAQPELPA 453
+AEG A P S G+ G++Q + + A + +G AQPE
Sbjct: 2072 QEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEG 2131
Query: 454 SKGP-AGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPGAAREA 512
+ P A G AQ PE + + ++G AQ +P G V P A EA
Sbjct: 2132 IEAPEAEGEAQ-PESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEG-VEAPEAEGEA 2189
>gi|20070205 ladinin 1 [Homo sapiens]
Length = 517
Score = 41.6 bits (96), Expect = 0.002
Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 40/320 (12%)
Query: 157 NTKGSQGPPWDPQAEATLSCHEGDPKAE------PLSTASQES-------VNRRALRQER 203
+T + P + S E P E PL AS++ + R R++R
Sbjct: 39 STTDDEAPRLSQNGDRQASASERLPSVEEAEVPKPLPPASKDEDEDIQSILRTRQERRQR 98
Query: 204 RKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQL 263
R+++E R +++G +P A + SK L PP LS +Q
Sbjct: 99 RQVVEAAQAPIQER-----LEAEEGRNSLSPVQATQKPLVSKKELEIPPRRR--LSREQR 151
Query: 264 EAWDLDDILQSLAGQEDNQGNR-----APGTVWWAADHRQVQDRMVPSAHNRLMEQLALL 318
W L++ +SL G+E + + +P + + ++ + S + E++
Sbjct: 152 GPWALEE--ESLVGREPEERKKGVPEKSPVLEKSSMPKKTAPEKSLVSDKTSISEKVLA- 208
Query: 319 CTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGPGPQLAQGMRLNAESPTIF 378
S+ ++ + K+ +++ E S S + S A PG L G RL +E +IF
Sbjct: 209 ----SEKTSLSEKIAVSEKRNSSEKKSVLEKTSVSEKSLA-PGMALGSGRRLVSEKASIF 263
Query: 379 IDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQ 438
+ L SP + + + E+ +A A G SP++ + G++ +
Sbjct: 264 ----EKALASEKSPTADAKPAPKRATASEQPLAQEPPASGGSPAT--TKEQRGRALPGKN 317
Query: 439 LRAFQK-GTAQPELPASKGP 457
L + K G + P AS+ P
Sbjct: 318 LPSLAKQGASDPPTVASRLP 337
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 40.0 bits (92), Expect = 0.005
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 35/203 (17%)
Query: 63 PDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEGRD 122
P++ AE PA A+AEE++P P +E + ASS EG
Sbjct: 578 PEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSE-------------RSASSVEG-- 622
Query: 123 PGRPFESSGEVSALLGMAEEPPRWLEGDLG--SLSFNTKGSQGPPWDPQAEATLSCHEGD 180
PG G + A + E P G++G SLS + + + PP DP + +S G
Sbjct: 623 PG------GALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGK 676
Query: 181 ---------PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVK 231
P P + + S ++R + + TRD PT G +
Sbjct: 677 HSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRD---PTPRPPGLPE 733
Query: 232 EAPCHAAESAPRSKMPLVEPPEG 254
EA AA S PR++ P G
Sbjct: 734 EATALAAPSPPRARARAAPRPLG 756
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 40.0 bits (92), Expect = 0.005
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 35/203 (17%)
Query: 63 PDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEGRD 122
P++ AE PA A+AEE++P P +E + ASS EG
Sbjct: 573 PEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSE-------------RSASSVEG-- 617
Query: 123 PGRPFESSGEVSALLGMAEEPPRWLEGDLG--SLSFNTKGSQGPPWDPQAEATLSCHEGD 180
PG G + A + E P G++G SLS + + + PP DP + +S G
Sbjct: 618 PG------GALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGK 671
Query: 181 ---------PKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVK 231
P P + + S ++R + + TRD PT G +
Sbjct: 672 HSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRD---PTPRPPGLPE 728
Query: 232 EAPCHAAESAPRSKMPLVEPPEG 254
EA AA S PR++ P G
Sbjct: 729 EATALAAPSPPRARARAAPRPLG 751
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.5 bits (88), Expect = 0.015
Identities = 64/252 (25%), Positives = 95/252 (37%), Gaps = 33/252 (13%)
Query: 39 SDSPLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWV---------AAAEES 89
+D P+ D E+ + R Q DL+ + A KS A + A
Sbjct: 963 ADEPVPDAEPEDGLLGVRAQCRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARR 1022
Query: 90 LPEPVLVPAELATEPG----CRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPR 145
PE P + EPG + + K+A G R SG V+ LL A P
Sbjct: 1023 PPEGHPTPRPASPEPGRVATVLASVKHKEAIGPGGEVVNRRRTLSGPVTGLLATARRGPG 1082
Query: 146 WLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTAS-QESVNRRALRQERR 204
D G + G Q P + EA + EG P A+ ++A+ + + + +QE
Sbjct: 1083 E-SADPGPFVEDGTGRQRPRGPSKGEAGV---EGPPLAKVEASATLKRRIRAKQNQQENV 1138
Query: 205 KMI--ETDILQ---KVTRDACGPTS--------SDKGGVKEAPCHAAESAPRSKMPLVEP 251
K I E+D ++ K GP + G V+ P A+E A ++P P
Sbjct: 1139 KFILTESDTVKRRPKAKEREAGPEPPPPLSVYHNGTGTVRRRP--ASEQAGPPELPPPPP 1196
Query: 252 PEGPPVLSLQQL 263
P PP L L
Sbjct: 1197 PAEPPPTDLAHL 1208
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 38.5 bits (88), Expect = 0.015
Identities = 72/353 (20%), Positives = 121/353 (34%), Gaps = 35/353 (9%)
Query: 171 EATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETD---ILQKVTRDACGPTSSDK 227
E T S G P LST + V RR L R +E + L+++ + D+
Sbjct: 9 EFTRSFFRGRPD---LSTLTHSIVRRRYLAHSGRSHLEPEEKQALKRLVEEELLKMQVDE 65
Query: 228 GGVKEAPCHAAESAPRSKMPLVEPPE-----------GPPVLSLQQLEAWDLDDILQSLA 276
+E + R P +P G S + + ++
Sbjct: 66 AASREDKLDLTKKGKRPPTPCSDPERKRFRFNSESESGSEASSPDYFGPPAKNGVAAEVS 125
Query: 277 GQEDNQGNRAPGTVWWAADHRQVQDRMVPSAHNRLMEQLALLCTTQSKASACARKVPADT 336
++ RA V ++D + +D E+ + RK P
Sbjct: 126 PAKEENPRRASKAVEESSDEERQRDLPAQRGEESSEEE-------EKGYKGKTRKKPVVK 178
Query: 337 PQDTKEADSGSRCASRKQGSQAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSS 396
Q +A S SR +R++ ++ P ++ T + + E + + +
Sbjct: 179 KQAPGKA-SVSRKQAREESEESEAEPVQRTAKKVEGNKGTKSLKESEQESEEEILAQKKE 237
Query: 397 HSSSDSEEEEEEEMAALGD------AEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPE 450
+ EEEE+EE GD + G S+ R+C KSQ + L Q E
Sbjct: 238 QREEEVEEEEKEEDEEKGDWKPRTRSNGRRKSAREERSCKQKSQAKRLLGDSDSEEEQKE 297
Query: 451 LPASKGPAGGRAQAP--EDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALG 501
AS G GR + P + + RT K +L + + +G P A G
Sbjct: 298 -AASSGDDSGRDREPPVQRKSEDRTQLKGGKRLSGSSEDEEDS-GKGEPTAKG 348
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 38.5 bits (88), Expect = 0.015
Identities = 52/176 (29%), Positives = 65/176 (36%), Gaps = 42/176 (23%)
Query: 104 PGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLG----MAEEPPRWLEGDLGSLSFNTK 159
P C Q RT S G PGR +GE A LG + EEPP L
Sbjct: 146 PRCTQEGRT---SKDSGEGPGRRRADNGEEGASLGSGWKLTEEPP---------LPPPPP 193
Query: 160 GSQGP-PWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRD 218
+GP P P E G PK + ++ R+ ++ R + L+KV D
Sbjct: 194 RRKGPLPAGPPPEDV----PGPPKRKEREAGNEPPTPRKKVKGGRERH-----LKKVGGD 244
Query: 219 ACGPTSSDKGGVKEAP------------CHAA---ESAPRSKMPLVEPPEGPPVLS 259
AC SD GG P CH E+ + K PL EGP V S
Sbjct: 245 ACLLRGSDPGGPGLLPPRVLNPSQAFSSCHPGLPPENWEKPKPPLAS-AEGPAVPS 299
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 333 PADTPQDTKE-ADSGSRCASRKQGSQAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLS 391
PA P ++E A + S QG + PG + AQG A + DL
Sbjct: 409 PAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQG----ATGTDLDFDL---------- 454
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPEL 451
S S SSS+SE + A+ G++EG G L Q A P L
Sbjct: 455 -SSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSL 513
Query: 452 PASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQAR 491
P P + G G + LC G R
Sbjct: 514 PGEAEPGAHAPDKEPELGGQEEGERD--GLCGLGNGCADR 551
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 333 PADTPQDTKE-ADSGSRCASRKQGSQAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLS 391
PA P ++E A + S QG + PG + AQG A + DL
Sbjct: 409 PAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQG----ATGTDLDFDL---------- 454
Query: 392 PESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPEL 451
S S SSS+SE + A+ G++EG G L Q A P L
Sbjct: 455 -SSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSL 513
Query: 452 PASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQAR 491
P P + G G + LC G R
Sbjct: 514 PGEAEPGAHAPDKEPELGGQEEGERD--GLCGLGNGCADR 551
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 36.6 bits (83), Expect = 0.057
Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 386 LPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKG 445
L + S ES + EE E E G G P+ LG R C +++
Sbjct: 182 LEEDNSDESDAEGDLGDGEEAEAEAPPAGPRPGPEPAGLGRRPC-----------PYEQA 230
Query: 446 TAQPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPE 505
+S+GP G R Q P A H+ G+ R+PR R L +P
Sbjct: 231 QGAMGRRSSEGPPGPRTQPPSSPAS-----VYHV----LGRGDPLRVPRCLQRPLSPLPH 281
Query: 506 PGAA 509
G A
Sbjct: 282 VGDA 285
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 36.6 bits (83), Expect = 0.057
Identities = 84/417 (20%), Positives = 155/417 (37%), Gaps = 61/417 (14%)
Query: 40 DSPLSDYGEEELFIFQRNQTSLIPDLSEELAE-----DPADGDKSRAWVAAAE------- 87
D Y +E FQ Q S LSE++ E DP + S +A +E
Sbjct: 3118 DMTKRSYADESFHFFQIGQESREETLSEDVKEGATGADPLPLETSAESLALSESKETVDD 3177
Query: 88 --ESLPEPVL-----VP---AELATEPGCRQNTR--TKDASSQEGRDPGRPFESSGEVSA 135
+ LP+ V +P A+L ++ G +T TK+A S +D P +G++
Sbjct: 3178 EADLLPDDVSEEVEEIPASDAQLNSQMGISASTETPTKEAVSVGTKD--LPTVQTGDIPP 3235
Query: 136 LLGM-------AEEPPRWLEGDLGSLS---FNTKGSQGPPWDPQAEATLSCHEGDPKAEP 185
L G+ + EP ++ D +L+ ++ +G P P+ + ++ P
Sbjct: 3236 LSGVKQISCPDSSEPAVQVQLDFSTLTRSVYSDRGDDSPDSSPEEQKSVIEIPTAPMENV 3295
Query: 186 LSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAESAPRSK 245
T S+ + R + + V+ D + A E+ P+SK
Sbjct: 3296 PFTESKSKIPVRTMPTSTPAPPSAEYESSVSEDFLSSVDEEN--------KADEAKPKSK 3347
Query: 246 MPLVEPPEGPPVLSLQQLEAWDLDDILQ-SLAGQEDNQGNRAPGTVWWAADHRQVQDRMV 304
+P+ P L + + DLD +Q ++A Q + + AP D+R +
Sbjct: 3348 LPVKVP------LQRVEQQLSDLDTSVQKTVAPQGQDMASIAP-------DNRSKSESDA 3394
Query: 305 PSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGPGPQL 364
S ++ + T+++ + R + + + A SR
Sbjct: 3395 SSLDSKTKCPVKTRSYTETETESRERAEELEL-ESEEGATRPKILTSRLPVKSRSTTSSC 3453
Query: 365 AQGMRLNAESPTIFIDL--RQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGA 419
G ES F DL +E + +S E+S ++ E E+E+ + ++ A
Sbjct: 3454 RGGTSPTKESKEHFFDLYRNSIEFFEEISDEASKLVDRLTQSEREQEIVSDDESSSA 3510
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 36.6 bits (83), Expect = 0.057
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 386 LPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLR-TCTGKSQLLQQLRAFQK 444
+P P SSSDSEEEE EE+ ++ P G R + T + L +
Sbjct: 1908 MPRRPPPSGGLSSSSDSEEEELEELPSV--PRPLQPEFSGSRVSLTDIPTEDEALGTPET 1965
Query: 445 GTAQPELPASKGPAGGRAQ-AP---------EDTAGSRTGRKQHMKLCAKGQSAQARLPR 494
G A P +G A + Q AP ++ A + R+ ++ +G SA++ LPR
Sbjct: 1966 GAATPMDWQEQGRAPSQDQEAPSPEALPSPGQEPAAGASPRRGELR---RGSSAESALPR 2022
Query: 495 GRPRALG--------------DVPEPGAAREA 512
PR LG P PGA R A
Sbjct: 2023 AGPRELGRGLHKAASVELPQRRSPSPGATRLA 2054
>gi|109637771 calpastatin isoform l [Homo sapiens]
Length = 654
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 289 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 346
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 347 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 403
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 404 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 459
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 460 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 518
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 519 KLS---DSLGQRQP 529
>gi|109637769 calpastatin isoform k [Homo sapiens]
Length = 673
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 308 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 365
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 366 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 422
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 423 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 478
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 479 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 537
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 538 KLS---DSLGQRQP 548
>gi|109637767 calpastatin isoform j [Homo sapiens]
Length = 667
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 302 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 359
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 360 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 416
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 417 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 472
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 473 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 531
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 532 KLS---DSLGQRQP 542
>gi|109637765 calpastatin isoform i [Homo sapiens]
Length = 708
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 343 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 400
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 401 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 457
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 458 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 513
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 514 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 572
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 573 KLS---DSLGQRQP 583
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 404 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 461
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 462 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 518
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 519 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 574
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 575 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 633
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 634 KLS---DSLGQRQP 644
>gi|109637761 calpastatin isoform g [Homo sapiens]
Length = 772
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 407 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 464
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 465 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 521
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 522 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 577
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 578 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 636
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 637 KLS---DSLGQRQP 647
>gi|109637759 calpastatin isoform f [Homo sapiens]
Length = 750
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 385 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 442
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 443 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 499
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 500 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 555
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 556 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 614
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 615 KLS---DSLGQRQP 625
>gi|109637757 calpastatin isoform e [Homo sapiens]
Length = 756
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 391 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 448
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 449 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 505
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 506 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 561
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 562 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 620
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 621 KLS---DSLGQRQP 631
>gi|27765085 calpastatin isoform b [Homo sapiens]
Length = 686
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 321 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 378
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 379 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 435
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 436 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 491
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 492 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 550
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 551 KLS---DSLGQRQP 561
>gi|109637753 calpastatin isoform a [Homo sapiens]
Length = 791
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 14/254 (5%)
Query: 35 PSLDSDS-PLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEP 93
P+ D D PL EE+ R+++ LI +LSE+ S+ E P
Sbjct: 426 PATDKDGKPLLPEPEEKPK--PRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAP 483
Query: 94 VLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGS 153
V + C + + ++ +G P E+ + LG E P + +
Sbjct: 484 APVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADS---LGKKEADPEDGKPVMDK 540
Query: 154 LSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQ 213
+ K + E D + E + + + + +++ M E +L
Sbjct: 541 VKEKAKEEDREKLGEKEETI----PPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLD 596
Query: 214 KVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQ 273
++ D GP ++ ++A AA S S+ P G P Q + DLDD L
Sbjct: 597 ALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDK-DLDDALD 655
Query: 274 SLAGQEDNQGNRAP 287
L+ D+ G R P
Sbjct: 656 KLS---DSLGQRQP 666
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,210,490
Number of Sequences: 37866
Number of extensions: 1293490
Number of successful extensions: 7394
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 6728
Number of HSP's gapped (non-prelim): 701
length of query: 520
length of database: 18,247,518
effective HSP length: 107
effective length of query: 413
effective length of database: 14,195,856
effective search space: 5862888528
effective search space used: 5862888528
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.