VPS8 33447

Name: VPS8	Sequence: fasta or formatted (1426aa)		NCBI GI: 57863275
Description: vacuolar protein sorting 8 homolog isoform b		Referenced in: ER, Golgi, and the Secretory Pathway WD Repeat Proteins
Other entries for this name: alt prot [1428aa] vacuolar protein sorting 8 homolog isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 78 2 C cysteine 2.5 36 2 D aspartate 5.7 81 3 E glutamate 7.4 106 3 F phenylalanine 4.3 61 1 G glycine 4.4 63 2 H histidine 2.9 42 1 I isoleucine 6.0 85 2 K lysine 5.8 83 3 L leucine 12.5 178 3 M methionine 2.5 36 2 N asparagine 3.6 52 2 P proline 3.9 56 3 Q glutamine 6.0 85 3 R arginine 3.9 56 2 S serine 8.2 117 3 T threonine 4.7 67 3 V valine 6.5 92 2 W tryptophan 0.8 11 1 Y tyrosine 2.9 41 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 8 homolog isoform b VPS8 0.998 vacuolar protein sorting 8 homolog isoform a RNF167 0.006 ring finger protein 167 DPF1 0.004 D4, zinc and double PHD fingers family 1 isoform c ... DPF1 0.004 D4, zinc and double PHD fingers family 1 isoform a ... CHD4 0.004 chromodomain helicase DNA binding protein 4 FBXW4 0.004 F-box and WD repeat domain containing 4 RNF130 0.004 ring finger protein 130 GNB5 0.004 guanine nucleotide-binding protein, beta-5 subunit is... GNB5 0.004 guanine nucleotide-binding protein, beta-5 subunit i... DPF1 0.004 D4, zinc and double PHD fingers family 1 isoform b ... ZNRF4 0.003 zinc and ring finger 4 WDR69 0.003 WD repeat domain 69 RNF133 0.003 ring finger protein 133 WDR5 0.003 WD repeat domain 5 WDR5 0.003 WD repeat domain 5 CHD5 0.003 chromodomain helicase DNA binding protein 5 KIF16B 0.003 kinesin-like motor protein C20orf23 RNF128 0.003 ring finger protein 128 isoform 1 RNF128 0.003 ring finger protein 128 isoform 2 RNF13 0.003 ring finger protein 13 RNF13 0.003 ring finger protein 13 CHD3 0.003 chromodomain helicase DNA binding protein 3 isoform ... CHD3 0.003 chromodomain helicase DNA binding protein 3 isoform ... CHD3 0.003 chromodomain helicase DNA binding protein 3 isoform... WDR36 0.002 WD repeat domain 36 MLL3 0.002 myeloid/lymphoid or mixed-lineage leukemia 3 FBXW10 0.002 F-box and WD-40 domain protein 10 CDRT1 0.002 CMT1A duplicated region transcript 1 WDR5B 0.002 WD repeat domain 5B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.