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Search of human proteins with 57232750
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57232750 HMG2 like isoform 1 [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 385 e-108
gi|57232748 HMG2 like isoform 2 [Homo sapiens] 235 1e-62
gi|194688135 high-mobility group box 2 [Homo sapiens] 160 6e-40
gi|194688133 high-mobility group box 2 [Homo sapiens] 160 6e-40
gi|11321591 high-mobility group box 2 [Homo sapiens] 160 6e-40
gi|4504425 high-mobility group box 1 [Homo sapiens] 151 4e-37
gi|71143137 high-mobility group box 3 [Homo sapiens] 144 6e-35
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 140 5e-34
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 140 5e-34
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 139 2e-33
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 125 2e-29
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 125 3e-29
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 125 3e-29
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 122 1e-28
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 122 1e-28
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 122 1e-28
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 121 3e-28
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 121 3e-28
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 121 3e-28
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 120 7e-28
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 112 2e-25
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 112 2e-25
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 112 2e-25
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 103 1e-22
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 72 3e-13
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 72 3e-13
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 66 2e-11
gi|226246533 TOX high mobility group box family member 3 isoform... 65 4e-11
gi|226054295 TOX high mobility group box family member 3 isoform... 65 4e-11
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 65 4e-11
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 385 bits (990), Expect = e-108
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV
Sbjct: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG 180
VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG
Sbjct: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG 180
Query: 181 KRVRQS 186
KRVRQS
Sbjct: 181 KRVRQS 186
>gi|57232748 HMG2 like isoform 2 [Homo sapiens]
Length = 112
Score = 235 bits (600), Expect = 1e-62
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 75 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 134
MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA
Sbjct: 1 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 60
Query: 135 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 186
TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS
Sbjct: 61 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 112
Score = 33.9 bits (76), Expect = 0.083
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+P+ SS++ F ++ + K + PN V + ++ + W + + EK YE L
Sbjct: 18 EPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRVALL 75
Query: 68 KARYQEEMMNYVGKRKKRRK 87
+A+Y EE+ Y + R+K
Sbjct: 76 RAKYFEELELYRKQCNARKK 95
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 160 bits (405), Expect = 6e-40
Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGK KP+ +SSY F+ R + K++ P++ V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
E +AK DKARY EM NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 119 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
S+ AK G+MWS + +K PYEQ+ A L+ KY +++ YR
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ F +R K K + P +G + ++K E W S +K YE A K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 69 ARYQEEMMNYVGKRKKRR-KRDPQEP 93
+Y++++ Y K K K+ P P
Sbjct: 153 EKYEKDIAAYRAKGKSEAGKKGPGRP 178
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 160 bits (405), Expect = 6e-40
Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGK KP+ +SSY F+ R + K++ P++ V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
E +AK DKARY EM NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 119 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
S+ AK G+MWS + +K PYEQ+ A L+ KY +++ YR
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ F +R K K + P +G + ++K E W S +K YE A K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 69 ARYQEEMMNYVGKRKKRR-KRDPQEP 93
+Y++++ Y K K K+ P P
Sbjct: 153 EKYEKDIAAYRAKGKSEAGKKGPGRP 178
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 160 bits (405), Expect = 6e-40
Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGK KP+ +SSY F+ R + K++ P++ V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
E +AK DKARY EM NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 119 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
S+ AK G+MWS + +K PYEQ+ A L+ KY +++ YR
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ F +R K K + P +G + ++K E W S +K YE A K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 69 ARYQEEMMNYVGKRKKRR-KRDPQEP 93
+Y++++ Y K K K+ P P
Sbjct: 153 EKYEKDIAAYRAKGKSEAGKKGPGRP 178
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 151 bits (381), Expect = 4e-37
Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGK KP+ +SSY F+ R + K++ P+ V F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117
E +AK DKARY+ EM Y+ G+ KK+ K DP P+RPPS+F LFC ++ ++K E+P
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
Query: 118 WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
S+ VAK G+MW+ +K PYE++ A L+ KY +++ YR
Sbjct: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 41.2 bits (95), Expect = 5e-04
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ F YR K K + P +G + ++K E W + + +K YE A K
Sbjct: 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ Y K K
Sbjct: 153 EKYEKDIAAYRAKGK 167
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 144 bits (362), Expect = 6e-35
Identities = 66/163 (40%), Positives = 100/163 (61%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+Y F+ R + K++ P V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+ +AK DK RY EM +Y + ++K+DP P+RPPS F LFC + ++K NP S+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 120
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
VAK G+MW+ D EK PY + A L+ KY +++ Y+ +
Sbjct: 121 GDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSK 163
Score = 40.8 bits (94), Expect = 7e-04
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F +R K K P +G + ++K E W +++ EK Y A K
Sbjct: 93 PKRPPSGFFLFCSEFRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYITKAAKLK 150
Query: 69 ARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+Y++++ +Y K K + P + R
Sbjct: 151 EKYEKDVADYKSKGKFDGAKGPAKVAR 177
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 87 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 144
K DP++P+ S++ F Q + K++NP V + +K + W T + EK +++
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 62
Query: 145 RVALLRAKYFEELELYRKQCNARKKYRMSARNR 177
+ +Y E++ Y +KK +A R
Sbjct: 63 MAKADKVRYDREMKDYGPAKGGKKKKDPNAPKR 95
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 140 bits (354), Expect = 5e-34
Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+Y F+ R + K++ P + F EFS+KCSE+W+++SK EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
LAK DK Y +E+ +Y G K +K+DP P+RPPS F LFC + + K NP +
Sbjct: 61 NELAKADKVHYDQEIKDY-GPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPI 119
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
VAK G+MW D EK PY + A L+ KY +++ +Y+ +
Sbjct: 120 GDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSK 162
Score = 37.0 bits (84), Expect = 0.010
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 87 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 144
K DP++P+ S++ F Q + K++NP + + +K + W T + EK + +
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNE 62
Query: 145 RVALLRAKYFEELELYRKQCNARKK 169
+ Y +E++ Y +KK
Sbjct: 63 LAKADKVHYDQEIKDYGPAKGGKKK 87
Score = 36.2 bits (82), Expect = 0.017
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F + K K P +G + ++K E W++++ EK Y A K
Sbjct: 92 PKRPPSGFFLFCSEFCPKSKSTNPGIPIG--DVAKKLGEMWKNLNDSEKQPYITQAAKLK 149
Query: 69 ARYQEEMMNYVGKRKKRRKRDP 90
+Y++++ Y K K + P
Sbjct: 150 EKYEKDVAVYKSKGKSDGAKGP 171
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 140 bits (354), Expect = 5e-34
Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+Y F+ R + K++ P + F EFS+KCSE+W+++SK EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
LAK DK Y +E+ +Y G K +K+DP P+RPPS F LFC + + K NP +
Sbjct: 61 NELAKADKVHYDQEIKDY-GPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPI 119
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
VAK G+MW D EK PY + A L+ KY +++ +Y+ +
Sbjct: 120 GDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSK 162
Score = 37.0 bits (84), Expect = 0.010
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 87 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 144
K DP++P+ S++ F Q + K++NP + + +K + W T + EK + +
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNE 62
Query: 145 RVALLRAKYFEELELYRKQCNARKK 169
+ Y +E++ Y +KK
Sbjct: 63 LAKADKVHYDQEIKDYGPAKGGKKK 87
Score = 36.2 bits (82), Expect = 0.017
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F + K K P +G + ++K E W++++ EK Y A K
Sbjct: 92 PKRPPSGFFLFCSEFCPKSKSTNPGIPIG--DVAKKLGEMWKNLNDSEKQPYITQAAKLK 149
Query: 69 ARYQEEMMNYVGKRKKRRKRDP 90
+Y++++ Y K K + P
Sbjct: 150 EKYEKDVAVYKSKGKSDGAKGP 171
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 139 bits (349), Expect = 2e-33
Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
MGK KP+ +SSY F+ R + K++ + V F EFS KCSE+W+++S EK K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60
Query: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117
E +AK DK Y+ +M Y+ G+ KK+ K DP P+RPPS+F LFC +++ ++K E+P
Sbjct: 61 EDMAKADKTHYERQMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYHPKIKGEHPG 119
Query: 118 WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
S+ VAK G+MW+ +K P E++ A L+ KY +++ Y+
Sbjct: 120 LSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQ 163
Score = 35.8 bits (81), Expect = 0.022
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ F Y K K + P +G + ++K E W + + +K E A K
Sbjct: 95 PKRPPSAFFLFCSEYHPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPGEKKAAKLK 152
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ Y K K
Sbjct: 153 EKYEKDIAAYQAKGK 167
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 125 bits (315), Expect = 2e-29
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KP+ +S+Y + + K++ P V F EFS+KCS +W+++S EK K+
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+AK D+ Y EM +Y G K +K+DP P+RPPS F LFC + ++K NP S+
Sbjct: 61 GEMAKADEVCYDREMKDY-GPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 119
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 120 GDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDV 156
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F +R K K P +G + ++K E W +++ EK Y A K
Sbjct: 92 PKRPPSGFFLFCSEFRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYVTKAAKLK 149
Query: 69 ARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+Y++++++ K K + P + R
Sbjct: 150 EKYEKDVVDCKLKGKFYGAKRPAKVAR 176
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 125 bits (313), Expect = 3e-29
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KP+ +S+Y + + K++ P V F EFS+KCS +W+++S EK K+
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+AK D+ Y EM +Y G K +K+DP P+RPPS F LFC + ++K NP S+
Sbjct: 61 GEMAKADEVCYDREMKDY-GPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 119
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 120 GDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDV 156
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F +R K K P +G + ++K E W +++ EK Y A K
Sbjct: 92 PKRPPSGFFLFCSEFRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYVTKAAKLK 149
Query: 69 ARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+Y++++++ K K + P + R
Sbjct: 150 EKYEKDVVDCKLKGKFYGAKRPAKVAR 176
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 125 bits (313), Expect = 3e-29
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KP+ +S+Y + + K++ P V F EFS+KCS +W+++S EK K+
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+AK D+ Y EM +Y G K +K+DP P+RPPS F LFC + ++K NP S+
Sbjct: 61 GEMAKADEVCYDREMKDY-GPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 119
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 120 GDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDV 156
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F +R K K P +G + ++K E W +++ EK Y A K
Sbjct: 92 PKRPPSGFFLFCSEFRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYVTKAAKLK 149
Query: 69 ARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+Y++++++ K K + P + R
Sbjct: 150 EKYEKDVVDCKLKGKFYGAKRPAKVAR 176
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 122 bits (307), Expect = 1e-28
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+YV F+ R + K++ P V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+ +AK DK EM KK K+DP P+RPPS F LF + ++K NP S+
Sbjct: 58 DEMAKTDKVHCDREMKGPAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISI 115
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 116 GDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F R K K P +G + ++K E W +++ EK Y K
Sbjct: 88 PKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ + K K
Sbjct: 146 EKYEKDVADSKSKGK 160
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 122 bits (307), Expect = 1e-28
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+YV F+ R + K++ P V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+ +AK DK EM KK K+DP P+RPPS F LF + ++K NP S+
Sbjct: 58 DEMAKTDKVHCDREMKGPAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISI 115
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 116 GDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F R K K P +G + ++K E W +++ EK Y K
Sbjct: 88 PKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ + K K
Sbjct: 146 EKYEKDVADSKSKGK 160
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 122 bits (307), Expect = 1e-28
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
M K KPK +S+YV F+ R + K++ P V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
+ +AK DK EM KK K+DP P+RPPS F LF + ++K NP S+
Sbjct: 58 DEMAKTDKVHCDREMKGPAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISI 115
Query: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 116 GDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F R K K P +G + ++K E W +++ EK Y K
Sbjct: 88 PKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ + K K
Sbjct: 146 EKYEKDVADSKSKGK 160
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 121 bits (304), Expect = 3e-28
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
KPK +S+Y F R + K++ P V F EFS+KCSEK +++S EK K++ +AK+D
Sbjct: 8 KPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVD 67
Query: 68 KARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKAT 127
K Y +EM + G + +K+DP +RP S F LFC + + ++K NP S+ +AK
Sbjct: 68 KVHYDQEMKDN-GPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKL 126
Query: 128 GKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
G+MW +D EK PY + A L+ KY +++ Y+ +
Sbjct: 127 GEMWINYSDREKQPYITKAADLKEKYEKDVADYKSK 162
Score = 35.8 bits (81), Expect = 0.022
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 10 KANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKA 69
K +S + F + K K P +G + ++K E W + S EK Y A K
Sbjct: 93 KRPLSGFFLFCSEFHPKIKSTNPGISIG--DMAKKLGEMWINYSDREKQPYITKAADLKE 150
Query: 70 RYQEEMMNYVGKRKKRRKRDP 90
+Y++++ +Y K K + P
Sbjct: 151 KYEKDVADYKSKGKFDSAKGP 171
Score = 27.7 bits (60), Expect = 5.9
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 146
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 147 ALLRAKYFEELE 158
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 121 bits (304), Expect = 3e-28
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
KPK +S+Y F R + K++ P V F EFS+KCSEK +++S EK K++ +AK+D
Sbjct: 8 KPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVD 67
Query: 68 KARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKAT 127
K Y +EM + G + +K+DP +RP S F LFC + + ++K NP S+ +AK
Sbjct: 68 KVHYDQEMKDN-GPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKL 126
Query: 128 GKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
G+MW +D EK PY + A L+ KY +++ Y+ +
Sbjct: 127 GEMWINYSDREKQPYITKAADLKEKYEKDVADYKSK 162
Score = 35.8 bits (81), Expect = 0.022
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 10 KANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKA 69
K +S + F + K K P +G + ++K E W + S EK Y A K
Sbjct: 93 KRPLSGFFLFCSEFHPKIKSTNPGISIG--DMAKKLGEMWINYSDREKQPYITKAADLKE 150
Query: 70 RYQEEMMNYVGKRKKRRKRDP 90
+Y++++ +Y K K + P
Sbjct: 151 KYEKDVADYKSKGKFDSAKGP 171
Score = 27.7 bits (60), Expect = 5.9
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 146
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 147 ALLRAKYFEELE 158
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 121 bits (304), Expect = 3e-28
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
KPK +S+Y F R + K++ P V F EFS+KCSEK +++S EK K++ +AK+D
Sbjct: 8 KPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVD 67
Query: 68 KARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKAT 127
K Y +EM + G + +K+DP +RP S F LFC + + ++K NP S+ +AK
Sbjct: 68 KVHYDQEMKDN-GPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKL 126
Query: 128 GKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
G+MW +D EK PY + A L+ KY +++ Y+ +
Sbjct: 127 GEMWINYSDREKQPYITKAADLKEKYEKDVADYKSK 162
Score = 35.8 bits (81), Expect = 0.022
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 10 KANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKA 69
K +S + F + K K P +G + ++K E W + S EK Y A K
Sbjct: 93 KRPLSGFFLFCSEFHPKIKSTNPGISIG--DMAKKLGEMWINYSDREKQPYITKAADLKE 150
Query: 70 RYQEEMMNYVGKRKKRRKRDP 90
+Y++++ +Y K K + P
Sbjct: 151 KYEKDVADYKSKGKFDSAKGP 171
Score = 27.7 bits (60), Expect = 5.9
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 146
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 147 ALLRAKYFEELE 158
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 120 bits (301), Expect = 7e-28
Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+ K + S+ + L++ + K++ P+ V F EF +KCSE W++I EK K+E +AK D
Sbjct: 682 RKKRILESHNNTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKAD 741
Query: 68 KARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAK 125
KA Y+ EM Y+ + KK++ +DP P+RPP +F LFC ++ ++K E+P S+ V K
Sbjct: 742 KAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVK 801
Query: 126 ATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR---KQCNARKK 169
MW+ +K YE++ A L+ KY +++ YR K +A+K+
Sbjct: 802 KLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKR 848
Score = 27.3 bits (59), Expect = 7.8
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQP----------------NTYVGFKEFSRKCSEKWRSI 52
PK ++ F YR K K + P NT K+F K + K +
Sbjct: 769 PKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEK 828
Query: 53 SKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQE 92
K + A Y A K + A+ + + K+KK + D ++
Sbjct: 829 YKKDIAAYRAKGKPNSAK-KRVVKAEKSKKKKEEEEDEED 867
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 112 bits (280), Expect = 2e-25
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 36 VGFKEFSRKCSEKWRSISKHEKAKY-------EALAKLDKARYQEEMMNYV---GKRKKR 85
V F EFS+KCSE+W+++S EK K+ E +AK DKA Y+ EM Y+ G+ KK+
Sbjct: 165 VNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKK 224
Query: 86 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 145
K DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE+R
Sbjct: 225 FK-DPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 146 VALLRAKYFEELELYR 161
A L+ KY +++ YR
Sbjct: 284 SAKLKEKYEKDIAAYR 299
Score = 36.6 bits (83), Expect = 0.013
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ + Y K K ++P + F + ++K E W + + +K YE + K
Sbjct: 231 PKRPPSAFFLYFSEYGPKIKGERPG--LSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ Y K K
Sbjct: 289 EKYEKDIAAYRAKGK 303
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 112 bits (280), Expect = 2e-25
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 36 VGFKEFSRKCSEKWRSISKHEKAKY-------EALAKLDKARYQEEMMNYV---GKRKKR 85
V F EFS+KCSE+W+++S EK K+ E +AK DKA Y+ EM Y+ G+ KK+
Sbjct: 165 VNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKK 224
Query: 86 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 145
K DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE+R
Sbjct: 225 FK-DPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 146 VALLRAKYFEELELYR 161
A L+ KY +++ YR
Sbjct: 284 SAKLKEKYEKDIAAYR 299
Score = 36.6 bits (83), Expect = 0.013
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ + Y K K ++P + F + ++K E W + + +K YE + K
Sbjct: 231 PKRPPSAFFLYFSEYGPKIKGERPG--LSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ Y K K
Sbjct: 289 EKYEKDIAAYRAKGK 303
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 112 bits (280), Expect = 2e-25
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 36 VGFKEFSRKCSEKWRSISKHEKAKY-------EALAKLDKARYQEEMMNYV---GKRKKR 85
V F EFS+KCSE+W+++S EK K+ E +AK DKA Y+ EM Y+ G+ KK+
Sbjct: 165 VNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKK 224
Query: 86 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 145
K DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE+R
Sbjct: 225 FK-DPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 146 VALLRAKYFEELELYR 161
A L+ KY +++ YR
Sbjct: 284 SAKLKEKYEKDIAAYR 299
Score = 36.6 bits (83), Expect = 0.013
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S++ + Y K K ++P + F + ++K E W + + +K YE + K
Sbjct: 231 PKRPPSAFFLYFSEYGPKIKGERPG--LSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ Y K K
Sbjct: 289 EKYEKDIAAYRAKGK 303
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 103 bits (256), Expect = 1e-22
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 40 EFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSS 99
EFS+KCSE+W+++S EK+K++ +AK DK EM KK K+DP P+RPPS
Sbjct: 19 EFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKK--KKDPSAPKRPPSG 76
Query: 100 FLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEEL 157
F LF + ++K NP S+ VAK G+MW+ D EK PY + A L+ KY +++
Sbjct: 77 FFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 134
Score = 33.1 bits (74), Expect = 0.14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
PK S + F R K K P +G + ++K E W +++ EK Y K
Sbjct: 70 PKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYITKTAKLK 127
Query: 69 ARYQEEMMNYVGKRK 83
+Y++++ + K K
Sbjct: 128 EKYEKDVADSKSKGK 142
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 72.0 bits (175), Expect = 3e-13
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 65 KLDKARYQEEMMNYVGKRKKRRKR--DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ 122
K+D A Y+ EM Y+ + + + + DP P+ PP +F +F + ++K E+P S+
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 123 VAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRG 180
VAK G+MW+ + +KHPYE++ L+ KY +++ + + + +A KK + A +C+
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKK 151
Query: 181 KR 182
K+
Sbjct: 152 KK 153
Score = 30.8 bits (68), Expect = 0.70
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 36 VGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+ + ++K E W I++ +K YE A K +Y++++ + GK K
Sbjct: 88 LSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGK------------ 135
Query: 96 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
P ++ + + K+E +++ K M+S T L H +
Sbjct: 136 PDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDHDF 182
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 72.0 bits (175), Expect = 3e-13
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 65 KLDKARYQEEMMNYVGKRKKRRKR--DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ 122
K+D A Y+ EM Y+ + + + + DP P+ PP +F +F + ++K E+P S+
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 123 VAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRG 180
VAK G+MW+ + +KHPYE++ L+ KY +++ + + + +A KK + A +C+
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKK 151
Query: 181 KR 182
K+
Sbjct: 152 KK 153
Score = 30.8 bits (68), Expect = 0.70
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 36 VGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRR 95
+ + ++K E W I++ +K YE A K +Y++++ + GK K
Sbjct: 88 LSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGK------------ 135
Query: 96 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
P ++ + + K+E +++ K M+S T L H +
Sbjct: 136 PDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDHDF 182
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 65.9 bits (159), Expect = 2e-11
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 83 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
KKR+K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
Query: 143 EQRVALLRAKYFEELELYR--KQCNA 166
+++ + +Y + L Y+ ++C A
Sbjct: 273 KRKTEAAKKEYLKALAAYKDNQECQA 298
Score = 36.2 bits (82), Expect = 0.017
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+P+ VS+Y F + + K Q PN G E S+ + W S+ + +K Y+ +
Sbjct: 222 EPQKPVSAYALFFRDTQAAIKGQNPNATFG--EVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 68 KARYQEEMMNYVGKRK-----KRRKRDPQEPRRPPS 98
K Y + + Y ++ + + DP P + PS
Sbjct: 280 KKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 64.7 bits (156), Expect = 4e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 83 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 240 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 299
Query: 143 EQRVALLRAKYFEELELYR 161
+++ + +Y + L YR
Sbjct: 300 KRKTEAAKKEYLKALAAYR 318
Score = 33.5 bits (75), Expect = 0.11
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+P+ VS+Y F + + K Q PN G E S+ + W S+ + +K Y+ +
Sbjct: 249 EPQKPVSAYALFFRDTQAAIKGQNPNATFG--EVSKIVASMWDSLGEEQKQVYKRKTEAA 306
Query: 68 KARYQEEMMNY 78
K Y + + Y
Sbjct: 307 KKEYLKALAAY 317
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 64.7 bits (156), Expect = 4e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 83 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 245 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 304
Query: 143 EQRVALLRAKYFEELELYR 161
+++ + +Y + L YR
Sbjct: 305 KRKTEAAKKEYLKALAAYR 323
Score = 33.5 bits (75), Expect = 0.11
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+P+ VS+Y F + + K Q PN G E S+ + W S+ + +K Y+ +
Sbjct: 254 EPQKPVSAYALFFRDTQAAIKGQNPNATFG--EVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 68 KARYQEEMMNY 78
K Y + + Y
Sbjct: 312 KKEYLKALAAY 322
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 64.7 bits (156), Expect = 4e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 83 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + +K Y
Sbjct: 251 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVY 310
Query: 143 EQRVALLRAKYFEELELYR 161
+++ + +Y ++L YR
Sbjct: 311 KKKTEAAKKEYLKQLAAYR 329
Score = 35.4 bits (80), Expect = 0.029
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
+P+ VS+Y F + + K Q PN G E S+ + W + + +K Y+ +
Sbjct: 260 EPQKPVSAYALFFRDTQAAIKGQNPNATFG--EVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 68 KARYQEEMMNY----VGKRKK-----RRKRDPQEPRRPPSSF--------LLFCQDHYAQ 110
K Y +++ Y V K + + PQ PS F L+ HY Q
Sbjct: 318 KKEYLKQLAAYRASLVSKSYSEPVDVKTSQPPQLINSKPSVFHGPSQAHSALYLSSHYHQ 377
Query: 111 LKRENPN 117
NP+
Sbjct: 378 QPGMNPH 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,258,648
Number of Sequences: 37866
Number of extensions: 300384
Number of successful extensions: 1680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 270
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.