Guide to the Human Genome
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Name: NXF2 Sequence: fasta or formatted (626aa) NCBI GI: 13430854
Description:

nuclear RNA export factor 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [626aa] nuclear RNA export factor 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         31           2
 C cysteine            3.2         20           1
 D aspartate           6.5         41           2
 E glutamate           6.2         39           2
 F phenylalanine       4.3         27           2
 G glycine             4.6         29           2
 H histidine           2.2         14           1
 I isoleucine          4.3         27           2
 K lysine              7.3         46           2
 L leucine             9.3         58           2
 M methionine          2.6         16           1
 N asparagine          4.5         28           2
 P proline             4.2         26           2
 Q glutamine           5.6         35           2
 R arginine            5.8         36           2
 S serine             10.1         63           4
 T threonine           5.1         32           2
 V valine              4.5         28           1
 W tryptophan          1.4          9           1
 Y tyrosine            3.4         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear RNA export factor 2 
NXF2B                 1.000   nuclear RNA export factor 2B 
NXF2                  1.000   nuclear RNA export factor 2 
NXF1                  0.553   nuclear RNA export factor 1 isoform 1 
NXF5                  0.465   nuclear RNA export factor 5 
NXF3                  0.414   nuclear RNA export factor 3 
NXF1                  0.269   nuclear RNA export factor 1 isoform 2 
C21orf2               0.014   hypothetical protein LOC755 
NTRK1                 0.010   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.010   neurotrophic tyrosine kinase, receptor, type 1 isofor...
NTRK1                 0.010   neurotrophic tyrosine kinase, receptor, type 1 isofo...
ANP32B                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LRRC23                0.009   leucine rich repeat containing 23 isoform a 
LRRC23                0.009   leucine rich repeat containing 23 isoform a 
CLTA                  0.008   clathrin, light polypeptide A isoform c 
CLTA                  0.008   clathrin, light polypeptide A isoform b 
LRRC47                0.008   leucine rich repeat containing 47 
CLTA                  0.007   clathrin, light polypeptide A isoform a 
SLIT3                 0.007   slit homolog 3 
FLRT2                 0.006   fibronectin leucine rich transmembrane protein 2 [Hom...
OMD                   0.006   osteomodulin 
BCR                   0.006   breakpoint cluster region isoform 2 
BCR                   0.006   breakpoint cluster region isoform 1 
ERCC6L                0.006   excision repair protein ERCC6-like 
DNAL1                 0.006   axonemal dynein light chain 1 
NISCH                 0.006   nischarin 
FLII                  0.006   flightless I homolog 
KERA                  0.006   keratocan 
ANP32E                0.006   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
LRRK1                 0.006   leucine-rich repeat kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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