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Search of human proteins with 134152680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform
2 [Homo sapiens]
(521 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 1024 0.0
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 963 0.0
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 959 0.0
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 946 0.0
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 769 0.0
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 768 0.0
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 762 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 386 e-107
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 374 e-104
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 367 e-101
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 358 9e-99
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 356 2e-98
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 355 7e-98
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 301 1e-81
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 144 2e-34
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 83 7e-16
gi|38201714 ELAV-like 1 [Homo sapiens] 82 1e-15
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 81 2e-15
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 81 2e-15
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 81 2e-15
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 81 2e-15
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 81 2e-15
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 78 2e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 78 2e-14
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 71 3e-12
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 69 1e-11
gi|51317355 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|51317353 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|51317351 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 67 3e-11
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 1024 bits (2647), Expect = 0.0
Identities = 521/521 (100%), Positives = 521/521 (100%)
Query: 1 MTSAFKLDFLPDMMVEGRLLVPDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSE 60
MTSAFKLDFLPDMMVEGRLLVPDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSE
Sbjct: 1 MTSAFKLDFLPDMMVEGRLLVPDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSE 60
Query: 61 KELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH 120
KELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH
Sbjct: 61 KELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH 120
Query: 121 HPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRG 180
HPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRG
Sbjct: 121 HPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRG 180
Query: 181 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN 240
CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN
Sbjct: 181 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN 240
Query: 241 TATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAA 300
TATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAA
Sbjct: 241 TATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAA 300
Query: 301 QTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNN 360
QTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNN
Sbjct: 301 QTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNN 360
Query: 361 INALAVAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLL 420
INALAVAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLL
Sbjct: 361 INALAVAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLL 420
Query: 421 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 480
QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG
Sbjct: 421 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 480
Query: 481 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY
Sbjct: 481 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 963 bits (2489), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 271
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 272 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 331
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 332 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 391
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 360
Query: 392 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 451
TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
Sbjct: 361 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 420
Query: 452 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 511
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL
Sbjct: 421 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 480
Query: 512 KRSKNDSKPY 521
KRSKNDSKPY
Sbjct: 481 KRSKNDSKPY 490
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 959 bits (2478), Expect = 0.0
Identities = 490/496 (98%), Positives = 490/496 (98%), Gaps = 6/496 (1%)
Query: 26 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 85
NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN
Sbjct: 19 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 78
Query: 86 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 145
PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM
Sbjct: 79 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 138
Query: 146 VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 205
VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM
Sbjct: 139 VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 198
Query: 206 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 265
EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT
Sbjct: 199 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 258
Query: 266 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 325
SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP
Sbjct: 259 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 318
Query: 326 VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGL 385
VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA GMAALNGGLGATGL
Sbjct: 319 VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA------GMAALNGGLGATGL 372
Query: 386 TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ 445
TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ
Sbjct: 373 TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ 432
Query: 446 EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK 505
EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK
Sbjct: 433 EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK 492
Query: 506 RLKVQLKRSKNDSKPY 521
RLKVQLKRSKNDSKPY
Sbjct: 493 RLKVQLKRSKNDSKPY 508
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 946 bits (2444), Expect = 0.0
Identities = 483/490 (98%), Positives = 485/490 (98%), Gaps = 2/490 (0%)
Query: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 271
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 272 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 331
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 332 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 391
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL A ++ MAALNGGLGATGLTNGTAG
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL--AGTINSMAALNGGLGATGLTNGTAG 358
Query: 392 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 451
TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
Sbjct: 359 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 418
Query: 452 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 511
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL
Sbjct: 419 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 478
Query: 512 KRSKNDSKPY 521
KRSKNDSKPY
Sbjct: 479 KRSKNDSKPY 488
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 769 bits (1986), Expect = 0.0
Identities = 392/493 (79%), Positives = 433/493 (87%), Gaps = 13/493 (2%)
Query: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 270
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 271 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 330
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
Query: 331 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTA 390
P+S++ ++N + SLG LQ LAGAT GLN L+GMAALNGGLG++GL+NGT
Sbjct: 298 PSSSSSNSVNPIASLGALQTLAGATAGLN-------VGSLAGMAALNGGLGSSGLSNGTG 350
Query: 391 GTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFG 448
TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFG
Sbjct: 351 STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 410
Query: 449 DQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 508
DQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLK
Sbjct: 411 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 470
Query: 509 VQLKRSKNDSKPY 521
VQLKRSKNDSKPY
Sbjct: 471 VQLKRSKNDSKPY 483
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 768 bits (1983), Expect = 0.0
Identities = 391/493 (79%), Positives = 433/493 (87%), Gaps = 14/493 (2%)
Query: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 270
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 271 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 330
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS + S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS--SGSS 296
Query: 331 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTA 390
P+S++ ++N + SLG LQ LAGAT GLN L+GMAALNGGLG++GL+NGT
Sbjct: 297 PSSSSSNSVNPIASLGALQTLAGATAGLN-------VGSLAGMAALNGGLGSSGLSNGTG 349
Query: 391 GTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFG 448
TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFG
Sbjct: 350 STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 409
Query: 449 DQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 508
DQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLK
Sbjct: 410 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 469
Query: 509 VQLKRSKNDSKPY 521
VQLKRSKNDSKPY
Sbjct: 470 VQLKRSKNDSKPY 482
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 762 bits (1968), Expect = 0.0
Identities = 391/497 (78%), Positives = 433/497 (87%), Gaps = 18/497 (3%)
Query: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLA----LLQQATS 266
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLA LLQQ S
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTAS 240
Query: 267 SSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPV 326
S NL S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS
Sbjct: 241 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS-- 296
Query: 327 AASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLT 386
+ S+P+S++ ++N + SLG LQ LAGAT GLN L+GMAALNGGLG++GL+
Sbjct: 297 SGSSPSSSSSNSVNPIASLGALQTLAGATAGLN-------VGSLAGMAALNGGLGSSGLS 349
Query: 387 NGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLP 444
NGT TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLP
Sbjct: 350 NGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLP 409
Query: 445 QEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGM 504
QEFGDQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGM
Sbjct: 410 QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 469
Query: 505 KRLKVQLKRSKNDSKPY 521
KRLKVQLKRSKNDSKPY
Sbjct: 470 KRLKVQLKRSKNDSKPY 486
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 386 bits (991), Expect = e-107
Identities = 233/513 (45%), Positives = 299/513 (58%), Gaps = 84/513 (16%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
+PDAIK+FVGQIPR EK+LK +FE +G ++++ V++D+ KGC F+T+ R +
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+GM+ K+ + D+R MF PF
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
Query: 163 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222
G I+EC +LRGPDG S+GCAFV F T A AQ AI +H S+T+ G SS +VVKFADT+K+
Sbjct: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Query: 223 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 277
+ RR+QQ Q LG +P L GA+S +Q
Sbjct: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
Query: 278 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 335
Q A + A L+ +A AA + NAN L T + + G T P A+TP S
Sbjct: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
Query: 336 GAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGL----TNGTAG 391
AA+ G+N + V +G A + L G+ A
Sbjct: 274 PAAL-----------------GVNGYSP--VPTQPTGQPAPDA-LYPNGVHPYPAQSPAA 313
Query: 392 TMDALTQAYSGIQQYAAAALPTLYS-----------------------QSLLQQQSAAGS 428
+D L QAY+G+Q Y AA P YS Q QQQ
Sbjct: 314 PVDPLQQAYAGMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQ 372
Query: 429 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 488
Q+EGP+G N+FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP
Sbjct: 373 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 432
Query: 489 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
SAQAAIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 433 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 374 bits (961), Expect = e-104
Identities = 233/492 (47%), Positives = 295/492 (59%), Gaps = 65/492 (13%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D DAIK+FVGQIPR E++LK LFE +G +Y++ VL+DR KGC F+T+ R +
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTG--LHKGCAFLTYCARDS 99
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
AL+AQ+ALH KTLPGM+ PIQ+KPA SE EDRKLF+GM+ K+ E D+R +F PF
Sbjct: 100 ALKAQSALHEQKTLPGMNRPIQVKPAASEGRG--EDRKLFVGMLGKQQGEEDVRRLFQPF 157
Query: 163 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222
G IEEC +LR PDG S+GCAFV F ++ AQ AI+ +H S+TM G SS +VVK ADT ++
Sbjct: 158 GHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRE 217
Query: 223 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGM 282
+ RR+QQ +A + + A LG A+LQ Q A +
Sbjct: 218 RALRRMQQ-MAGHLGAFHPAP----LPLGACGAYTTAILQH--------------QAALL 258
Query: 283 NALQLQNLATLAAAAAAAQ-TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNS 341
A Q L +AA AA Q +A S A PL + A+ NS G+
Sbjct: 259 AAAQGPGLGPVAAVAAQMQHVAAFSLVAAPL-------------LPAAAANSPPGSGP-- 303
Query: 342 LTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNG--------TAGTM 393
GTL GL A +G+N L NG G+ L N + G
Sbjct: 304 ----GTLPGLP-APIGVNGFGPLT--------PQTNGQPGSDTLYNNGLSPYPAQSPGVA 350
Query: 394 DALTQAYSGIQQYAAAALPTLY---SQSLLQQQSAAGSQ-KEGPEGANLFIYHLPQEFGD 449
D L QAY+G+ YAAA P+ Y S + QQ SA Q +EGPEG NLFIYHLPQEFGD
Sbjct: 351 DPLQQAYAGMHHYAAA-YPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGD 409
Query: 450 QDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKV 509
+++Q F+PFG V+SAKVF+D+ TN SKCFGFVS+DNP SAQ AIQAMNGFQIGMKRLKV
Sbjct: 410 AELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKV 469
Query: 510 QLKRSKNDSKPY 521
QLKR K+ ++PY
Sbjct: 470 QLKRPKDANRPY 481
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 35 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 94
AL + P+ +F+ +P+ + + EL + F P+GAV V DR+ N QSK F
Sbjct: 384 ALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN--QSKCFGF 441
Query: 95 VTFYTRKAALEAQNALHNIKTLPGMHH-PIQMK-PADSEK 132
V+F +A A A++ + GM +Q+K P D+ +
Sbjct: 442 VSFDNPTSAQTAIQAMNGFQI--GMKRLKVQLKRPKDANR 479
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 367 bits (943), Expect = e-101
Identities = 231/498 (46%), Positives = 292/498 (58%), Gaps = 72/498 (14%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D DAIK+FVGQIPR EK+LK LFE +G +Y++ VL+D KGC F+T+ R +
Sbjct: 41 DLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTG--MHKGCAFLTYCARDS 98
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A++AQ ALH KTLPGM PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PF
Sbjct: 99 AIKAQTALHEQKTLPGMARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPF 157
Query: 163 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222
G I+EC +LRGPDG S+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K+
Sbjct: 158 GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217
Query: 223 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGM 282
+ RR+QQ + Q LG LTP
Sbjct: 218 RTLRRMQQMVGQ---------------LGILTPSL------------------------- 237
Query: 283 NALQLQNLATLAAAAAAAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTA 335
L + A A QT+ ST+ + LS + +GA++ +TP + A
Sbjct: 238 -TLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA 296
Query: 336 GAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT--- 392
+ ++S LGT + G + N V G AL + A GL A +
Sbjct: 297 -SGLHSPPLLGT-TAVPGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTV 352
Query: 393 MDALTQAYSGIQQY-----AAAALPTLYS----QSLLQQQSAAGSQKEGPEGANLFIYHL 443
+ L A+SG+QQY AA P +S LLQQQ Q+EGPEG NLFIYHL
Sbjct: 353 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ-----QREGPEGCNLFIYHL 407
Query: 444 PQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIG 503
PQEFGD ++ QMF+PFGN+IS+KVF+D+ TN SKCFGFVS+DNP SAQAAIQAMNGFQIG
Sbjct: 408 PQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 467
Query: 504 MKRLKVQLKRSKNDSKPY 521
MKRLKVQLKR K+ PY
Sbjct: 468 MKRLKVQLKRPKDPGHPY 485
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 36 LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
L + P+ +F+ +P+ + + EL ++F P+G + V DR+ N QSK FV
Sbjct: 389 LQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATN--QSKCFGFV 446
Query: 96 TF---YTRKAALEAQN 108
+F + +AA++A N
Sbjct: 447 SFDNPASAQAAIQAMN 462
Score = 39.7 bits (91), Expect = 0.007
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 417 QSLLQQQ-SAAGSQKEGPEGAN-----------LFIYHLPQEFGDQDILQMFMPFGNVIS 464
Q LLQ + S GS P G LF+ +P+ ++D+ +F FG +
Sbjct: 14 QQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYE 73
Query: 465 AKVFIDKQTNLSKCFGFVSY---DNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 519
V D T + K F++Y D+ + AQ A+ GM R +Q+K + ++S+
Sbjct: 74 LTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLP-GMAR-PIQVKPADSESR 129
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 358 bits (918), Expect = 9e-99
Identities = 228/521 (43%), Positives = 295/521 (56%), Gaps = 89/521 (17%)
Query: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV--- 136
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
Query: 137 -----EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAM 191
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A
Sbjct: 145 RQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAE 204
Query: 192 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLG 251
AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 205 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFG 259
Query: 252 GLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNAN 310
A+ QQA +++ + MA A Q+Q +A L AAA + TS +
Sbjct: 260 AYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGST 319
Query: 311 PLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQML 370
P T+ A+ ++ SP+ +N T L N A+
Sbjct: 320 PPGITAPAVPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE-- 354
Query: 371 SGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLL 420
A G+ + TA D L QAY+G+QQYA AA P Y Q ++
Sbjct: 355 ---AVFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMI 409
Query: 421 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 480
QQ Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG
Sbjct: 410 PQQ-----QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG-------------------- 444
Query: 481 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
FVS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 445 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 485
Score = 67.0 bits (162), Expect = 4e-11
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 22 PDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRD 81
P ++ ++ G QP K+FVG + + SE +++ LFE +G + + +LR
Sbjct: 127 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG 186
Query: 82 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKL 141
N SKGC FV + + A A NALH +T+PG + +K AD++K + +
Sbjct: 187 PDGN---SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243
Query: 142 FIGMVSKKCNENDIRVMFSPFG 163
G + N + + F +G
Sbjct: 244 MAGQMGM---FNPMAIPFGAYG 262
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 356 bits (914), Expect = 2e-98
Identities = 230/521 (44%), Positives = 297/521 (57%), Gaps = 88/521 (16%)
Query: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV--- 136
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
Query: 137 -----EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAM 191
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A
Sbjct: 145 RQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAE 204
Query: 192 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLG 251
AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 205 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAY 261
Query: 252 GLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNAN 310
G Q L + QQA +++ + MA A Q+Q +A L AAA + TS +
Sbjct: 262 GAYAQAL-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGST 320
Query: 311 PLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQML 370
P T+ A+ ++ SP+ +N T L N A+
Sbjct: 321 PPGITAPAVPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE-- 355
Query: 371 SGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLL 420
A G+ + TA D L QAY+G+QQYA AA P Y Q ++
Sbjct: 356 ---AVFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMI 410
Query: 421 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 480
QQ Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG
Sbjct: 411 PQQ-----QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG-------------------- 445
Query: 481 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
FVS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 67.0 bits (162), Expect = 4e-11
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 22 PDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRD 81
P ++ ++ G QP K+FVG + + SE +++ LFE +G + + +LR
Sbjct: 127 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG 186
Query: 82 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKL 141
N SKGC FV + + A A NALH +T+PG + +K AD++K + +
Sbjct: 187 PDGN---SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243
Query: 142 FIGMVSKKCNENDIRVMFSPFG 163
G + N + + F +G
Sbjct: 244 MAGQMGM---FNPMAIPFGAYG 262
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 355 bits (910), Expect = 7e-98
Identities = 227/520 (43%), Positives = 293/520 (56%), Gaps = 88/520 (16%)
Query: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE-- 137
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
Query: 138 -----DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMA 192
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A A
Sbjct: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 204
Query: 193 QNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGG 252
Q AI A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 205 QAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGA 259
Query: 253 LTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANP 311
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P
Sbjct: 260 YGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTP 319
Query: 312 LSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLS 371
T+ A+ ++ SP+ +N T L N A+
Sbjct: 320 PGITAPAVPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE--- 353
Query: 372 GMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQ 421
A G+ + TA D L QAY+G+QQYA AA P Y Q ++
Sbjct: 354 --AVFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIP 409
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
QQ Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG F
Sbjct: 410 QQ-----QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------F 444
Query: 482 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
VS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 445 VSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 301 bits (771), Expect = 1e-81
Identities = 208/504 (41%), Positives = 273/504 (54%), Gaps = 92/504 (18%)
Query: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDR
Sbjct: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDR 142
Query: 140 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 199
KLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI A+
Sbjct: 143 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 202
Query: 200 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 259
H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G G Q L
Sbjct: 203 HGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQAL- 258
Query: 260 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTSSA 318
+ QQA +++ + MA A Q+Q +A L AAA + TS + P T+ A
Sbjct: 259 MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPA 318
Query: 319 LGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNG 378
+ ++ SP+ +N T L N A+ A
Sbjct: 319 VPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE-----AVFAN 350
Query: 379 GLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGAN 437
G+ + TA D L QAY+G+QQYA AA P Y Q + P+
Sbjct: 351 GIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPP 398
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+ +PQ+ + GFVS+DNP SAQ AIQAM
Sbjct: 399 M----IPQQQRE------------------------------GFVSFDNPASAQTAIQAM 424
Query: 498 NGFQIGMKRLKVQLKRSKNDSKPY 521
NGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 425 NGFQIGMKRLKVQLKRPKDANRPY 448
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 144 bits (363), Expect = 2e-34
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%)
Query: 119 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 178
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
Query: 179 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
Query: 239 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 298
LG LTP L + A A
Sbjct: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
Query: 299 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 351
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196
Query: 352 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 406
G + N V G AL + A GL A + + L A+SG+QQY
Sbjct: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
Query: 407 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 445
AA P +S LLQQQ G + G + L YH Q
Sbjct: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
Score = 64.3 bits (155), Expect = 3e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
Query: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 146
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Query: 482 VSYDNPVSAQAAIQAMNGFQ 501
V + + AQAAI A++G Q
Sbjct: 65 VKFSSHTEAQAAIHALHGSQ 84
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 82.8 bits (203), Expect = 7e-16
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 12/214 (5%)
Query: 22 PDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRD 81
P IN N + +D + D + V +P++ +++ELK LF G + ++RD
Sbjct: 18 PTTIN---NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 73
Query: 82 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKL 141
+ QS G FV + K A +A N L+ ++ +P+ S ++ D L
Sbjct: 74 KITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANL 127
Query: 142 FIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMH 200
++ + K + ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 201 QSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 234
Q G + PI VKFA+ K + + QL Q
Sbjct: 188 -GQKPPGATEPITVKFANNPSQKTNQAILSQLYQ 220
Score = 61.2 bits (147), Expect = 2e-09
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 424 SAAGSQKEGPEGAN--LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
S AG G G +F+Y+L + + + QMF PFG V + KV D TN K FGF
Sbjct: 262 SLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 321
Query: 482 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 515
V+ N A AI ++NG+++G + L+V K +K
Sbjct: 322 VTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 56.2 bits (134), Expect = 7e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ +++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 54.7 bits (130), Expect = 2e-07
Identities = 20/64 (31%), Positives = 43/64 (67%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 496 AMNG 499
+NG
Sbjct: 185 GLNG 188
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L ++F P+GAV + V+RD + N + KG FVT A A
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 335
Query: 109 ALHNIK 114
+L+ +
Sbjct: 336 SLNGYR 341
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 33 NGALDHSDQP---DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQS 89
NG DH + D + V +P++ ++ EL+ LF G V ++RD+ S
Sbjct: 3 NGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG--HS 60
Query: 90 KGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKK 149
G FV + T K A A N L+ ++ +P+ S ++D L+I + +
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS----SEVIKDANLYISGLPRT 116
Query: 150 CNENDIRVMFSPFGQIEECRIL-RGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGC 208
+ D+ MFS FG+I R+L GLSRG AF+ F R+ A+ AI + + G
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN-GHKPPGS 175
Query: 209 SSPIVVKFADTQKDKEQRRLQQQL 232
S PI VKFA + L QL
Sbjct: 176 SEPITVKFAANPNQNKNVALLSQL 199
Score = 63.5 bits (153), Expect = 4e-10
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+FIY+L Q+ + + QMF PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 498 NGFQIGMKRLKVQLKRSKN 516
NG+++G K L+V K +K+
Sbjct: 306 NGYRLGDKILQVSFKTNKS 324
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 407 AAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAK 466
A L L QS + S A E + ANL+I LP+ +D+ MF FG +I+++
Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 467 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNG 499
V +D+ T LS+ F+ +D A+ AI + NG
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 53.1 bits (126), Expect = 6e-07
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G V SAK+ DK S +GFV+Y A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 497 MNGFQIGMKRLKVQLKRSKND 517
+NG ++ K +KV R ++
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 31.6 bits (70), Expect = 1.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+F+ + + E L ++F P+GAV + V+RD + N + KG FVT + A A
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYEEAAMAIA 303
Query: 109 ALHNIK 114
+L+ +
Sbjct: 304 SLNGYR 309
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 163 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 222 DKEQRRLQQQLAQ 234
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 498 NGFQIGMKRLKVQLKRSK 515
NG+++G + L+V K +K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 496 AMNGFQIGMKRLKVQLKRSKNDSK 519
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 356
Query: 109 ALHNIK 114
+L+ +
Sbjct: 357 SLNGYR 362
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 102
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 103 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 158
Query: 163 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 159 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 217
Query: 222 DKEQRRLQQQLAQ 234
K + L QL Q
Sbjct: 218 QKSSQALLSQLYQ 230
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 498 NGFQIGMKRLKVQLKRSK 515
NG+++G + L+V K +K
Sbjct: 348 NGYRLGDRVLQVSFKTNK 365
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 50 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 110 LNGLRLQTKTIKVSYARPSSAS 131
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 135 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 194
Query: 496 AMNGFQIGMKRLKVQLKRSKNDSK 519
+NG + + +K + N S+
Sbjct: 195 GLNGQKPSGATEPITVKFANNPSQ 218
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 345
Query: 109 ALHNIK 114
+L+ +
Sbjct: 346 SLNGYR 351
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 163 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 222 DKEQRRLQQQLAQ 234
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 498 NGFQIGMKRLKVQLKRSK 515
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 496 AMNGFQIGMKRLKVQLKRSKNDSK 519
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 109 ALHNIK 114
+L+ +
Sbjct: 343 SLNGYR 348
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 116
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 117 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 172
Query: 163 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 173 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 231
Query: 222 DKEQRRLQQQLAQ 234
K + L QL Q
Sbjct: 232 QKSSQALLSQLYQ 244
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 498 NGFQIGMKRLKVQLKRSK 515
NG+++G + L+V K +K
Sbjct: 362 NGYRLGDRVLQVSFKTNK 379
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 64 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 124 LNGLRLQTKTIKVSYARPSSAS 145
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 149 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 208
Query: 496 AMNGFQIGMKRLKVQLKRSKNDSK 519
+NG + + +K + N S+
Sbjct: 209 GLNGQKPSGATEPITVKFANNPSQ 232
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 359
Query: 109 ALHNIK 114
+L+ +
Sbjct: 360 SLNGYR 365
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 43 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 163 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 222 DKEQRRLQQQLAQ 234
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 498 NGFQIGMKRLKVQLKRSK 515
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 497 MNGFQIGMKRLKVQLKRSKNDS 518
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 496 AMNGFQIGMKRLKVQLKRSKNDSK 519
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 109 ALHNIK 114
+L+ +
Sbjct: 343 SLNGYR 348
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 77.8 bits (190), Expect = 2e-14
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 26 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 85
NG NGA D S + V +P++ ++ E K LF G + ++RD+
Sbjct: 24 NGPLLGTNGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG 77
Query: 86 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 145
QS G FV + A +A N L+ +K +P+ S ++ D L++
Sbjct: 78 --QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYVSG 131
Query: 146 VSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 204
+ K ++ ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++ +
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 191
Query: 205 MEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 234
+ G + PI VKFA+ K + L L Q
Sbjct: 192 L-GAAEPITVKFANNPSQKTGQALLTHLYQ 220
Score = 66.2 bits (160), Expect = 7e-11
Identities = 93/396 (23%), Positives = 159/396 (40%), Gaps = 76/396 (19%)
Query: 133 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 189
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 190 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 242
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 243 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 301
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 302 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 361
A NP T AL + + S+ AG ++ T L L G+ +
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKS- 251
Query: 362 NALAVAQMLSGMAALNG--GLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSL 419
L++ S +A ++G GL GL+ G AG
Sbjct: 252 -PLSLIARFSPIA-IDGMSGLAGVGLSGGAAGA--------------------------- 282
Query: 420 LQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCF 479
G +F+Y+L E + + Q+F PFG V + KV D TN K F
Sbjct: 283 ---------------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGF 327
Query: 480 GFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 515
GFV+ N A AI ++NG+++G + L+V K SK
Sbjct: 328 GFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 56.2 bits (134), Expect = 7e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 412 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 471
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 472 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 518
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIA 343
Query: 109 ALHNIK 114
+L+ +
Sbjct: 344 SLNGYR 349
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 77.8 bits (190), Expect = 2e-14
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 26 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 85
NG NGA D S + V +P++ ++ E K LF G + ++RD+
Sbjct: 24 NGPLLGTNGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG 77
Query: 86 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 145
QS G FV + A +A N L+ +K +P+ S ++ D L++
Sbjct: 78 --QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYVSG 131
Query: 146 VSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 204
+ K ++ ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++ +
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 191
Query: 205 MEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 234
+ G + PI VKFA+ K + L L Q
Sbjct: 192 L-GAAEPITVKFANNPSQKTGQALLTHLYQ 220
Score = 70.1 bits (170), Expect = 5e-12
Identities = 91/394 (23%), Positives = 154/394 (39%), Gaps = 79/394 (20%)
Query: 133 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 189
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 190 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 242
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 243 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 301
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 302 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 361
A NP T AL + + S+ AG ++ T L L G+
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKRF 252
Query: 362 NALAVAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQ 421
+ +A+ M GL GL+ G AG
Sbjct: 253 SPIAIDGM--------SGLAGVGLSGGAAGA----------------------------- 275
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
G +F+Y+L E + + Q+F PFG V + KV D TN K FGF
Sbjct: 276 -------------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGF 322
Query: 482 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 515
V+ N A AI ++NG+++G + L+V K SK
Sbjct: 323 VTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
Score = 56.2 bits (134), Expect = 7e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 412 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 471
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 472 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 518
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 33.9 bits (76), Expect = 0.37
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 2 TSAFKLDFLPDMMVEGRLLVPDRINGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEK 61
T F+LD L +M + P I+G + L I FV + E
Sbjct: 234 TQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCI--FVYNLSPEADES 291
Query: 62 ELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIK 114
L +LF P+GAV + V+RD + N + KG FVT A A +L+ +
Sbjct: 292 VLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIASLNGYR 342
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 70.9 bits (172), Expect = 3e-12
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 47 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 106
+ +FVG++P S ++L+ELF G V Q V+ ++ SK C + T +
Sbjct: 4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKG-----SKACRGFGYVTFSMLEDV 58
Query: 107 QNALHNIKTLPGMHHPIQM---------------------KPADSEKSNAVEDRK--LFI 143
Q AL I T G + + K K V D+K L I
Sbjct: 59 QRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLII 118
Query: 144 GMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ 203
+S KC+E+D++ +F+ FG + E I R PDG RG FV F A A+K M+ +
Sbjct: 119 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 178
Score = 38.5 bits (88), Expect = 0.015
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 133 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAM 191
S+ E + +FI +S E ++ + FG+++ RI+ PD S+GCAF F T+
Sbjct: 329 SDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEA 388
Query: 192 AQNAIKA 198
AQ + A
Sbjct: 389 AQKCLLA 395
Score = 37.7 bits (86), Expect = 0.026
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 141 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 199
LF+G + + +FS G +++C ++ + RG +VTFS M ++ +A+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS---MLEDVQRAL 62
Query: 200 HQSQTMEGCSSPIVV---KFADTQKDK 223
+ T EGC + V K + K+K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTKEK 89
Score = 34.3 bits (77), Expect = 0.28
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 435 GANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 494
G LF+ LP + + ++F G V V +K + + FG+V++ Q A+
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 495 QAMNGFQIGMKRLKVQLKRSKNDSK 519
+ + F+ + V K+ +N +K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTK 87
Score = 34.3 bits (77), Expect = 0.28
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 421 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 480
+++ A K + A L I +L + + D+ +F FG V+ + K + FG
Sbjct: 99 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNI-PRKPDGKMRGFG 157
Query: 481 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 519
FV + N + A A++ MN +I + + V +K+ K
Sbjct: 158 FVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYK 196
Score = 31.6 bits (70), Expect = 1.8
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 434 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 493
EG +FI +L + ++++ ++ FG + ++ + T SK F + +AQ
Sbjct: 333 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 392
Query: 494 IQAMN------GFQIGMKRLKVQLKRSKNDS 518
+ A + G ++ ++LKV L +++++
Sbjct: 393 LLAASPENEAGGLKLDGRQLKVDLAVTRDEA 423
Score = 31.6 bits (70), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 103
+F+ + E+EL EL + +G + + ++ + SKGC F F T++AA
Sbjct: 337 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLH--PDTEHSKGCAFAQFMTQEAA 389
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 68.6 bits (166), Expect = 1e-11
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 36 LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
+D D+P I + + + E L+E F P+G + I V+RD+ + +SKG FV
Sbjct: 17 VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
Query: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL--FIGMVSKKC 150
F A A +H P PI++ A S S + VED +L M+ K
Sbjct: 72 KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
Query: 151 NENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS 209
E D+R F +G IE C I++ G S+G +V + +K +Q +E C
Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
Query: 210 SPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238
A+ K+K +Q M+Q
Sbjct: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
Score = 34.3 bits (77), Expect = 0.28
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 434 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 492
E N I+ + ++ + +L + F PFG++ V DK T SK FV + A
Sbjct: 22 EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
Query: 493 AIQAMNGFQIG---MKRLKVQLKRSKN 516
A++ M+G +G K +KV + +S++
Sbjct: 82 AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
Score = 32.7 bits (73), Expect = 0.83
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 431 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 490
E P LFI P + +F FGN+I + K G+ Y + +SA
Sbjct: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
Query: 491 QAAIQAMNGFQIGMKRLKVQLKRSKND 517
AI ++G + RLKV L S +
Sbjct: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 68.2 bits (165), Expect = 2e-11
Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 38/332 (11%)
Query: 28 TANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPP 87
T + N + ++S +++ +P ++++L +L +PYG + + D++ N
Sbjct: 42 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-- 99
Query: 88 QSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS 147
Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I +
Sbjct: 100 QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLP 148
Query: 148 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQS 202
+E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 149 ISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 203 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQ 262
+ S P++ KFAD + K Q Q N W G +AL
Sbjct: 209 PGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTY 255
Query: 263 QATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSALGA 321
T++ G +S +A + ++ AA+ + ST+ P GA
Sbjct: 256 DPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGA 315
Query: 322 LTSPVAASTPNSTAGAAMNSLT------SLGT 347
+ +P + M LT SLGT
Sbjct: 316 VITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 398 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 457
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 458 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 510
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 482 VSYDNPVSAQAAIQAMNG 499
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 397 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 456
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
Query: 457 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 510
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
Score = 66.6 bits (161), Expect = 5e-11
Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 35/305 (11%)
Query: 28 TANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPP 87
T + N + ++S +++ +P ++++L +L +PYG + + D++ N
Sbjct: 41 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-- 98
Query: 88 QSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS 147
Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I +
Sbjct: 99 QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLP 147
Query: 148 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQS 202
+E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 148 ISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
Query: 203 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQ 262
+ S P++ KFAD + K Q Q N W G +AL
Sbjct: 208 PGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTY 254
Query: 263 QATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TTSSA 318
T++ G +S +A + ++ AA+ + T T +P+S ++
Sbjct: 255 DPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANM 314
Query: 319 LGALT 323
+G LT
Sbjct: 315 MGPLT 319
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Query: 482 VSYDNPVSAQAAIQAMNG 499
++ + IQ NG
Sbjct: 184 ARMESTEKCEVVIQHFNG 201
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 68.2 bits (165), Expect = 2e-11
Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 38/332 (11%)
Query: 28 TANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPP 87
T + N + ++S +++ +P ++++L +L +PYG + + D++ N
Sbjct: 42 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-- 99
Query: 88 QSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS 147
Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I +
Sbjct: 100 QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLP 148
Query: 148 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQS 202
+E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 149 ISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 203 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQ 262
+ S P++ KFAD + K Q Q N W G +AL
Sbjct: 209 PGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTY 255
Query: 263 QATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSALGA 321
T++ G +S +A + ++ AA+ + ST+ P GA
Sbjct: 256 DPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGA 315
Query: 322 LTSPVAASTPNSTAGAAMNSLT------SLGT 347
+ +P + M LT SLGT
Sbjct: 316 VITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 398 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 457
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 458 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 510
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 482 VSYDNPVSAQAAIQAMNG 499
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 67.4 bits (163), Expect = 3e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
++VG + R +E + +LF G ++ + + N P CFV FY + A A
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----CFVEFYEHRDAAAALA 66
Query: 109 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 168
A++ K L S+K + +F+G +S + DI+ F+PFG+I +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 169 RILRG-PDGLSRGCAFVTFSTRAMAQNAIKAM-------HQSQTMEGCSSPIVVKFADTQ 220
R+++ G S+G FV+F + A+NAI M Q +T P K + +
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPK-STQE 185
Query: 221 KDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL 258
+ +Q R + + Q + T G + GLT Q +
Sbjct: 186 NNTKQLRFEDVVNQSSPKNCTVYCGGIA--SGLTDQLM 221
Score = 63.5 bits (153), Expect = 4e-10
Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 45/257 (17%)
Query: 24 RINGTANKMNGALDHSDQPDPDA--IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRD 81
+I G K+N A S Q + +FVG + + +++K F P+G + V++D
Sbjct: 72 KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKD 131
Query: 82 RSQNPPQSKGCCFVTFYTRKAALEAQNAL----------HNIKTLPGMHHPI-------- 123
+ +SKG FV+FY + L+A+NA+ I+T P
Sbjct: 132 MATG--KSKGYGFVSFYNK---LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 124 ---QMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRG 180
Q++ D ++ ++ ++ G ++ + +R FSPFGQI E R+ +G
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-----EKG 241
Query: 181 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLN 240
+FV FST A +AI +++ T+EG VVK ++ + + + QQ++
Sbjct: 242 YSFVRFSTHESAAHAIVSVN-GTTIEG----HVVKCYWGKESPD-------MTKNFQQVD 289
Query: 241 TATWGNLTGLGGLTPQY 257
+ WG + + G QY
Sbjct: 290 YSQWGQWSQVYGNPQQY 306
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 407 AAAALPTLYSQSLLQQQ-------SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPF 459
AAAAL + + +L ++ + + +K+ ++F+ L E +DI F PF
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 460 GNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 508
G + A+V D T SK +GFVS+ N + A+ AI M G +G ++++
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Score = 35.8 bits (81), Expect = 0.098
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
L++ +L ++ + ILQ+F G S K+ + +N C FV + A AA+ AM
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC--FVEFYEHRDAAAALAAM 68
Query: 498 NGFQIGMKRLKVQLKRSKNDSK 519
NG +I K +KV + + K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQK 90
Score = 33.5 bits (75), Expect = 0.48
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 430 KEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVS 489
+ P+ ++ + DQ + Q F PFG ++ +VF +K + FV + S
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHES 252
Query: 490 AQAAIQAMNGFQI 502
A AI ++NG I
Sbjct: 253 AAHAIVSVNGTTI 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,231,923
Number of Sequences: 37866
Number of extensions: 703222
Number of successful extensions: 5570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 3866
Number of HSP's gapped (non-prelim): 1452
length of query: 521
length of database: 18,247,518
effective HSP length: 107
effective length of query: 414
effective length of database: 14,195,856
effective search space: 5877084384
effective search space used: 5877084384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.