Guide to the Human Genome
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Name: SFI1 Sequence: fasta or formatted (1211aa) NCBI GI: 55956784
Description:

spindle assembly associated Sfi1 homolog isoform b

Referenced in:

Centrosome

Other entries for this name:
alt prot [1242aa] spindle assembly associated Sfi1 homolog isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8        131           3
 C cysteine            1.9         23           1
 D aspartate           1.5         18           1
 E glutamate           6.5         79           2
 F phenylalanine       3.1         37           1
 G glycine             3.1         38           2
 H histidine           4.7         57           3
 I isoleucine          1.9         23           2
 K lysine              5.5         66           2
 L leucine            11.9        144           4
 M methionine          1.8         22           1
 N asparagine          1.3         16           1
 P proline             3.6         43           2
 Q glutamine          10.2        124           3
 R arginine           12.0        145           3
 S serine              5.0         61           2
 T threonine           4.0         48           2
 V valine              4.8         58           3
 W tryptophan          4.1         50           2
 Y tyrosine            2.3         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spindle assembly associated Sfi1 homolog isoform b [... 
SFI1                  0.994   spindle assembly associated Sfi1 homolog isoform a [...
BSN                   0.010   bassoon protein 
LOC727832             0.010   golgi autoantigen, golgin subfamily a-like 
KIAA1407              0.010   hypothetical protein LOC57577 
SFPQ                  0.010   splicing factor proline/glutamine rich (polypyrimidin...
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
LOC283685             0.009   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RERE                  0.009   atrophin-1 like protein isoform b 
RERE                  0.009   atrophin-1 like protein isoform a 
RERE                  0.009   atrophin-1 like protein isoform a 
FAM90A13              0.009   PREDICTED: hypothetical protein 
FAM90A15              0.009   PREDICTED: hypothetical protein LOC389630 
FAM90A12              0.008   PREDICTED: hypothetical protein 
FAM90A14              0.008   PREDICTED: hypothetical protein 
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
FAM90A8               0.008   PREDICTED: hypothetical protein 
CROCC                 0.008   ciliary rootlet coiled-coil 
ASPM                  0.008   asp (abnormal spindle)-like, microcephaly associate...
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.008   myeloid/lymphoid or mixed-lineage leukemia 2 
FAM90A5               0.008   PREDICTED: hypothetical protein 
TCHH                  0.008   trichohyalin 
TTBK1                 0.008   tau tubulin kinase 1 
FAM90A7               0.008   hypothetical protein LOC441317 
FAM90A20              0.008   PREDICTED: hypothetical protein 
LOC100287045          0.008   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.008   PREDICTED: hypothetical protein XP_002342468 isofor...
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FAM90A9               0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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