Guide to the Human Genome
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Name: KIAA1407 Sequence: fasta or formatted (936aa) NCBI GI: 24308223
Description:

hypothetical protein LOC57577

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         59           2
 C cysteine            1.0          9           1
 D aspartate           3.1         29           2
 E glutamate          12.0        112           5
 F phenylalanine       2.8         26           2
 G glycine             3.3         31           1
 H histidine           2.7         25           1
 I isoleucine          3.6         34           2
 K lysine             11.5        108           4
 L leucine            10.6         99           2
 M methionine          2.4         22           2
 N asparagine          3.1         29           1
 P proline             3.5         33           2
 Q glutamine           8.1         76           3
 R arginine            8.2         77           3
 S serine              5.7         53           2
 T threonine           4.4         41           3
 V valine              4.3         40           2
 W tryptophan          2.0         19           1
 Y tyrosine            1.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57577 
TCHH                  0.039   trichohyalin 
CCDC88C               0.026   DVL-binding protein DAPLE 
LOC283685             0.024   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.023   PREDICTED: Putative golgin subfamily A member 6-lik...
ITSN1                 0.022   intersectin 1 isoform ITSN-s 
ITSN1                 0.022   intersectin 1 isoform ITSN-l 
LOC283685             0.022   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CALD1                 0.022   caldesmon 1 isoform 1 
MYH7B                 0.022   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
WDR87                 0.021   NYD-SP11 protein 
MYH9                  0.021   myosin, heavy polypeptide 9, non-muscle 
MAP7D2                0.021   MAP7 domain containing 2 
MYH3                  0.021   myosin, heavy chain 3, skeletal muscle, embryonic [H...
LOC727832             0.020   golgi autoantigen, golgin subfamily a-like 
MYH10                 0.020   myosin, heavy polypeptide 10, non-muscle 
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC400352             0.020   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.020   PREDICTED: similar to Putative golgin subfamily A m...
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
LOC645202             0.019   PREDICTED: hypothetical protein LOC645202 
EIF3A                 0.019   eukaryotic translation initiation factor 3, subunit 1...
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform b 
EEA1                  0.019   early endosome antigen 1, 162kD 
INCENP                0.019   inner centromere protein antigens 135/155kDa isofor...
CCDC19                0.019   nasopharyngeal epithelium specific protein 1 
INCENP                0.018   inner centromere protein antigens 135/155kDa isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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