VPS13D 32711

Name: VPS13D	Sequence: fasta or formatted (4388aa)		NCBI GI: 54607139
Description: vacuolar protein sorting 13D isoform 1		Referenced in: ER, Golgi, and the Secretory Pathway Small RNAs in RNA Processing
Other entries for this name: alt prot [4363aa] vacuolar protein sorting 13D isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 236 2 C cysteine 1.5 66 2 D aspartate 5.1 222 2 E glutamate 7.1 310 3 F phenylalanine 4.6 200 2 G glycine 5.8 256 3 H histidine 2.5 110 2 I isoleucine 4.9 213 2 K lysine 5.7 252 3 L leucine 10.8 475 4 M methionine 2.1 90 2 N asparagine 4.1 182 2 P proline 5.5 241 3 Q glutamine 4.8 210 3 R arginine 5.2 228 3 S serine 8.9 389 4 T threonine 5.7 249 3 V valine 7.0 309 3 W tryptophan 0.8 35 2 Y tyrosine 2.6 115 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 13D isoform 1 VPS13D 0.993 vacuolar protein sorting 13D isoform 2 VPS13C 0.024 vacuolar protein sorting 13C protein isoform 1A [Hom... VPS13C 0.024 vacuolar protein sorting 13C protein isoform 1B [Hom... VPS13C 0.022 vacuolar protein sorting 13C protein isoform 2B [Hom... VPS13C 0.022 vacuolar protein sorting 13C protein isoform 2A [Hom... VPS13A 0.021 vacuolar protein sorting 13A isoform B VPS13A 0.021 vacuolar protein sorting 13A isoform D VPS13A 0.021 vacuolar protein sorting 13A isoform A VPS13A 0.021 vacuolar protein sorting 13A isoform C VPS13B 0.006 vacuolar protein sorting 13B isoform 5 VPS13B 0.006 vacuolar protein sorting 13B isoform 1 VPS13B 0.005 vacuolar protein sorting 13B isoform 4 VPS13B 0.005 vacuolar protein sorting 13B isoform 3 ATG2A 0.003 autophagy related 2A ATG2B 0.003 ATG2 autophagy related 2 homolog B UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... LOC100292957 0.002 PREDICTED: hypothetical protein HCFC1 0.002 host cell factor 1 USP5 0.001 ubiquitin specific peptidase 5 isoform 2 USP5 0.001 ubiquitin specific peptidase 5 isoform 1 TSFM 0.001 Ts translation elongation factor, mitochondrial pre... MYO18A 0.001 myosin 18A isoform a UHRF1BP1 0.001 ICBP90 binding protein 1 MYO18A 0.001 myosin 18A isoform b DZIP1L 0.001 DAZ interacting protein 1-like AFF4 0.001 ALL1 fused gene from 5q31 NGRN 0.001 neugrin LOC283685 0.001 PREDICTED: golgi autoantigen, golgin subfamily a-li... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.