Search of human proteins with 5453760

Search of human proteins with 5453760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453760 neural precursor cell expressed, developmentally down...   160   2e-40
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom...    97   3e-21
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ...    97   3e-21
gi|11024714 ubiquitin B precursor [Homo sapiens]                       96   5e-21
gi|67191208 ubiquitin C [Homo sapiens]                                 96   5e-21
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s...    96   5e-21
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ...    96   5e-21
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]           81   2e-16
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]           81   2e-16
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]           81   2e-16
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]               56   7e-09
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]               56   7e-09
gi|7657667 ubiquitin-like 4 [Homo sapiens]                             54   2e-08
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi...    53   6e-08
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...    50   4e-07
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...    50   4e-07
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]    47   3e-06
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]     47   3e-06
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]     47   3e-06
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]    47   3e-06
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i...    45   1e-05
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i...    45   1e-05
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi...    45   1e-05
gi|13376439 ubiquitin domain containing 1 [Homo sapiens]               45   1e-05
gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo...    45   2e-05
gi|222352096 ubiquitin D [Homo sapiens]                                42   1e-04
gi|44662819 ubiquitin-like 4B [Homo sapiens]                           42   1e-04
gi|169790971 parkin isoform 2 [Homo sapiens]                           41   2e-04
gi|169790969 parkin isoform 1 [Homo sapiens]                           41   2e-04
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H...    40   5e-04

>gi|5453760 neural precursor cell expressed, developmentally
          down-regulated 8 [Homo sapiens]
          Length = 81

 Score =  160 bits (405), Expect = 2e-40
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 ILGGSVLHLVLALRGGGGLRQ 81
          ILGGSVLHLVLALRGGGGLRQ
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQ 81


>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
          sapiens]
          Length = 156

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGGGGLRQ 81
          I   S LHLVL LRGG   R+
Sbjct: 61 IQKESTLHLVLRLRGGAKKRK 81


>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
          sapiens]
          Length = 156

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGGGGLRQ 81
          I   S LHLVL LRGG   R+
Sbjct: 61 IQKESTLHLVLRLRGGAKKRK 81


>gi|11024714 ubiquitin B precursor [Homo sapiens]
          Length = 229

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGG 76
          I   S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>gi|67191208 ubiquitin C [Homo sapiens]
          Length = 685

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGG 76
          I   S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684



 Score = 93.2 bits (230), Expect = 4e-20
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M I VKTLTGK I +++EP+D +E +K ++++KEGIP  QQRLI++GKQ+ D +T +DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212

Query: 61  ILGGSVLHLVLALRGG 76
           I   S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGG 76
          I   S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76


>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 ILGGSVLHLVLALRGG 76
          I   S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76


>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score = 80.9 bits (198), Expect = 2e-16
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
           I VKTL GK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +D  I 
Sbjct: 71  IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130

Query: 63  GGSVLHLVLALRG 75
               LHL+L L G
Sbjct: 131 KEPTLHLLLRLCG 143


>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score = 80.9 bits (198), Expect = 2e-16
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
           I VKTL GK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +D  I 
Sbjct: 71  IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130

Query: 63  GGSVLHLVLALRG 75
               LHL+L L G
Sbjct: 131 KEPTLHLLLRLCG 143


>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score = 80.9 bits (198), Expect = 2e-16
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
           I VKTL GK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +D  I 
Sbjct: 71  IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130

Query: 63  GGSVLHLVLALRG 75
               LHL+L L G
Sbjct: 131 KEPTLHLLLRLCG 143


>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
          Length = 727

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M + ++TLTG   E+ + P + V  +K ++   EGIP  +Q LI++  ++ ++    DY 
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87

Query: 61  ILGGSVLHLVLALRGG 76
           I  G  L LVLA+RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103


>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
          Length = 727

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
           M + ++TLTG   E+ + P + V  +K ++   EGIP  +Q LI++  ++ ++    DY 
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87

Query: 61  ILGGSVLHLVLALRGG 76
           I  G  L LVLA+RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103


>gi|7657667 ubiquitin-like 4 [Homo sapiens]
          Length = 157

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M + VK L G+E  + +   + V  +K+ V EK  +P +QQRL++ GK + D K  +DY 
Sbjct: 1  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60

Query: 61 ILGGSVLHLVL 71
          I   S L+LV+
Sbjct: 61 IGPNSKLNLVV 71


>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
          sapiens]
          Length = 409

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAA 57
          M + +KTL  +  +IDI+P + V+ +KE++E ++G    P   Q+LIY+GK +ND+    
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYKI 61
          +YKI
Sbjct: 61 EYKI 64


>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
           sapiens]
          Length = 728

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 8   LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 67
           L G+ +   +  TD+V  IK ++ E  G+P  +Q+L Y G  + D  + A Y +  G+V+
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716

Query: 68  HLVLALRGG 76
           HL L  RGG
Sbjct: 717 HLALKERGG 725


>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
           sapiens]
          Length = 793

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 8   LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 67
           L G+ +   +  TD+V  IK ++ E  G+P  +Q+L Y G  + D  + A Y +  G+V+
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781

Query: 68  HLVLALRGG 76
           HL L  RGG
Sbjct: 782 HLALKERGG 790


>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
          + VKTL  +     +     V+  KE +     IP ++QRLIY G+ + D+K   +Y + 
Sbjct: 19 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV- 77

Query: 63 GGSVLHLV 70
          GG V+HLV
Sbjct: 78 GGKVIHLV 85


>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
          + VKTL  +     +     V+  KE +     IP ++QRLIY G+ + D+K   +Y + 
Sbjct: 19 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV- 77

Query: 63 GGSVLHLV 70
          GG V+HLV
Sbjct: 78 GGKVIHLV 85


>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
          + VKTL  +     +     V+  KE +     IP ++QRLIY G+ + D+K   +Y + 
Sbjct: 19 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV- 77

Query: 63 GGSVLHLV 70
          GG V+HLV
Sbjct: 78 GGKVIHLV 85


>gi|149158692 HLA-B associated transcript-3 isoform a [Homo
          sapiens]
          Length = 1132

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
          + VKTL  +     +     V+  KE +     IP ++QRLIY G+ + D+K   +Y + 
Sbjct: 19 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV- 77

Query: 63 GGSVLHLV 70
          GG V+HLV
Sbjct: 78 GGKVIHLV 85


>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
          isoform 1 [Homo sapiens]
          Length = 793

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 1  MLIKVKTLTGKEIEI--DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 58
          M I+V+T+ G++      +    KVE ++ +++E   + P  QRL Y GKQM D  T  D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YKILGGSVLHLVL 71
          Y++     + L++
Sbjct: 61 YEVRLNDTIQLLV 73


>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
          isoform 2 [Homo sapiens]
          Length = 806

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 1  MLIKVKTLTGKEIEI--DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 58
          M I+V+T+ G++      +    KVE ++ +++E   + P  QRL Y GKQM D  T  D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73

Query: 59 YKILGGSVLHLVL 71
          Y++     + L++
Sbjct: 74 YEVRLNDTIQLLV 86


>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
          sapiens]
          Length = 363

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADY 59
          I +KTL  +  +I +EP + V+ +KE++E ++G    P   Q+LIY+GK ++D+    DY
Sbjct: 5  ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64

Query: 60 KI 61
          +I
Sbjct: 65 RI 66


>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
          Length = 227

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
           +KV+  TGK++ +     D V ++K ++  +EGI P  QR  +SGK + D     + KI 
Sbjct: 151 LKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQ 210

Query: 63  GGSVLHLVL 71
              V+ +++
Sbjct: 211 KDFVIQVII 219


>gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo
           sapiens]
          Length = 234

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 41/70 (58%)

Query: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
           ++++  TGK++++ +  TD V  +K R+   EG+ P  QR  +SG+ + D+    + KI 
Sbjct: 154 LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 213

Query: 63  GGSVLHLVLA 72
              V+ ++++
Sbjct: 214 KDYVVQVIVS 223


>gi|222352096 ubiquitin D [Homo sapiens]
          Length = 165

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 15  IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74
           + +  +  V ++K  +E K GI P+ Q +  +GK++ D K  ADY I  G++L L     
Sbjct: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163

Query: 75  GG 76
           GG
Sbjct: 164 GG 165



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71
          D  P D V++IKE V  K  +P Q Q L+   K +   ++ + Y I     +HL L
Sbjct: 23 DANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTL 78


>gi|44662819 ubiquitin-like 4B [Homo sapiens]
          Length = 174

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 39/71 (54%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M + VK L G+   + +   + V  +K  V  +  +P +QQ L++ G+ + D+K  +DY 
Sbjct: 1  MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60

Query: 61 ILGGSVLHLVL 71
          I   + +++++
Sbjct: 61 IGPNASINVIM 71


>gi|169790971 parkin isoform 2 [Homo sapiens]
          Length = 437

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 43/70 (61%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M++ V+  +     ++++    + ++KE V +++G+P  Q R+I++GK++ ++ T  +  
Sbjct: 1  MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60

Query: 61 ILGGSVLHLV 70
          +   S++H+V
Sbjct: 61 LDQQSIVHIV 70


>gi|169790969 parkin isoform 1 [Homo sapiens]
          Length = 465

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 43/70 (61%)

Query: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
          M++ V+  +     ++++    + ++KE V +++G+P  Q R+I++GK++ ++ T  +  
Sbjct: 1  MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60

Query: 61 ILGGSVLHLV 70
          +   S++H+V
Sbjct: 61 LDQQSIVHIV 70


>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
          [Homo sapiens]
          Length = 802

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 1  MLIKVKTLTGKE---IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 57
          M I+V+T+ G +   IE D+     +E ++ERV     + P+ QRL Y GKQ+ +  T  
Sbjct: 1  MWIQVRTIDGSKTCTIE-DVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 59

Query: 58 DYKILGGSVLHLVL 71
          DY +    ++ L++
Sbjct: 60 DYDVGLNDIIQLLV 73


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.138    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,086,603
Number of Sequences: 37866
Number of extensions: 116697
Number of successful extensions: 482
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 74
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.