BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1 [Homo sapiens] (2000 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 4096 0.0 gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 4028 0.0 gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 4008 0.0 gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 2701 0.0 gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 2625 0.0 gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 581 e-165 gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 566 e-161 gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 526 e-148 gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 514 e-145 gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 514 e-145 gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 505 e-142 gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 444 e-124 gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 435 e-121 gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 422 e-117 gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 410 e-114 gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 407 e-113 gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 405 e-112 gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 403 e-111 gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 402 e-111 gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 401 e-111 gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 401 e-111 gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 393 e-108 gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 393 e-108 gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 388 e-107 gi|21914927 helicase, lymphoid-specific [Homo sapiens] 290 1e-77 gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72 gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72 gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 268 5e-71 gi|4557565 excision repair cross-complementing rodent repair def... 261 6e-69 gi|58219008 RAD26L hypothetical protein [Homo sapiens] 219 3e-56 >gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1 [Homo sapiens] Length = 2000 Score = 4096 bits (10623), Expect = 0.0 Identities = 2000/2000 (100%), Positives = 2000/2000 (100%) Query: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN Sbjct: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60 Query: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK Sbjct: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120 Query: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI Sbjct: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180 Query: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP Sbjct: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240 Query: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG Sbjct: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300 Query: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL Sbjct: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360 Query: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC Sbjct: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420 Query: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI Sbjct: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480 Query: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR Sbjct: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540 Query: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED Sbjct: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600 Query: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ Sbjct: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660 Query: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV Sbjct: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720 Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780 Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840 Query: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN Sbjct: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900 Query: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL Sbjct: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960 Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080 Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140 Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200 Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260 Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320 Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380 Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440 Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500 Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560 Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620 Query: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG Sbjct: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680 Query: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW Sbjct: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740 Query: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL Sbjct: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800 Query: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV Sbjct: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860 Query: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY Sbjct: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920 Query: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL Sbjct: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980 Query: 1981 VSDGLDRKEPRAGEVICIDD 2000 VSDGLDRKEPRAGEVICIDD Sbjct: 1981 VSDGLDRKEPRAGEVICIDD 2000 >gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3 [Homo sapiens] Length = 2059 Score = 4028 bits (10447), Expect = 0.0 Identities = 1968/1968 (100%), Positives = 1968/1968 (100%) Query: 33 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 92 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG Sbjct: 92 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 151 Query: 93 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 152 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS Sbjct: 152 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 211 Query: 153 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 212 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA Sbjct: 212 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 271 Query: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS Sbjct: 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331 Query: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH Sbjct: 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 391 Query: 333 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 392 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII Sbjct: 392 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 451 Query: 393 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 452 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE Sbjct: 452 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 511 Query: 453 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 512 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI Sbjct: 512 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 571 Query: 513 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 572 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI Sbjct: 572 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 631 Query: 573 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 632 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT Sbjct: 632 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 691 Query: 633 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 692 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP Sbjct: 692 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 751 Query: 693 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 752 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA Sbjct: 752 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 811 Query: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY Sbjct: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 871 Query: 813 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 872 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL Sbjct: 872 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 931 Query: 873 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 932 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE Sbjct: 932 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 991 Query: 933 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 992 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ Sbjct: 992 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 1051 Query: 993 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG Sbjct: 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1111 Query: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG Sbjct: 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1171 Query: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR Sbjct: 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1231 Query: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG Sbjct: 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1291 Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV Sbjct: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1351 Query: 1293 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA Sbjct: 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1411 Query: 1353 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF Sbjct: 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1471 Query: 1413 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE Sbjct: 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1531 Query: 1473 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS Sbjct: 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1591 Query: 1533 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK Sbjct: 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1651 Query: 1593 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE Sbjct: 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1711 Query: 1653 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA Sbjct: 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1771 Query: 1713 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII Sbjct: 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1831 Query: 1773 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR Sbjct: 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1891 Query: 1833 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI Sbjct: 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1951 Query: 1893 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ Sbjct: 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 2011 Query: 1953 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2000 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD Sbjct: 2012 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2059 Score = 33.9 bits (76), Expect = 1.6 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 24/126 (19%) Query: 233 PIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL 292 P P PP LPPPP PPP + G K+R + P +K+ K P Sbjct: 74 PPPPPPPPPLPPPPP---PPPPDKDDIRLLPSALGVKKRKRGP-----KKQKENKPGKPR 125 Query: 293 KIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRP 352 K ++K+ F S+ E ES GS + GP R ++ K Sbjct: 126 K--------RKKRDSEEEFGSERDEYREKSES---GGSEYGT-----GPGRKRRRKHREK 169 Query: 353 GRKKKK 358 KK K Sbjct: 170 KEKKTK 175 Score = 33.5 bits (75), Expect = 2.1 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%) Query: 424 EKEGVQWEAKEEEEEYEEEGEEEGEKE----EEDD 454 E+E + EEEEE EEEG+EE E+E +EDD Sbjct: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDD 43 >gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2 [Homo sapiens] Length = 1966 Score = 4008 bits (10395), Expect = 0.0 Identities = 1966/2000 (98%), Positives = 1966/2000 (98%), Gaps = 34/2000 (1%) Query: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN Sbjct: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60 Query: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK Sbjct: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120 Query: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI Sbjct: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180 Query: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP Sbjct: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240 Query: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG Sbjct: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300 Query: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL Sbjct: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360 Query: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC Sbjct: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420 Query: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI Sbjct: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480 Query: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR Sbjct: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540 Query: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED Sbjct: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600 Query: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ Sbjct: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660 Query: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV Sbjct: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720 Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780 Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840 Query: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN Sbjct: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900 Query: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL Sbjct: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960 Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080 Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140 Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200 Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260 Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320 Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380 Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440 Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500 Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560 Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620 Query: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680 VPGVPGEMEPEPGYRGDREKS EDVKG Sbjct: 1621 VPGVPGEMEPEPGYRGDREKS----------------------------------EDVKG 1646 Query: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW Sbjct: 1647 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1706 Query: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL Sbjct: 1707 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1766 Query: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV Sbjct: 1767 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1826 Query: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY Sbjct: 1827 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1886 Query: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL Sbjct: 1887 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1946 Query: 1981 VSDGLDRKEPRAGEVICIDD 2000 VSDGLDRKEPRAGEVICIDD Sbjct: 1947 VSDGLDRKEPRAGEVICIDD 1966 >gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sapiens] Length = 1954 Score = 2701 bits (7001), Expect = 0.0 Identities = 1370/1987 (68%), Positives = 1574/1987 (79%), Gaps = 159/1987 (8%) Query: 50 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 109 +K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++ Sbjct: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105 Query: 110 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 166 KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS Sbjct: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165 Query: 167 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 226 QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA Sbjct: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219 Query: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286 V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G Sbjct: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268 Query: 287 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 346 KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K Sbjct: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321 Query: 347 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 406 + R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL Sbjct: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370 Query: 407 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 466 DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426 Query: 467 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 522 ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V Sbjct: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486 Query: 523 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 582 +P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ Sbjct: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543 Query: 583 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 642 RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D Sbjct: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603 Query: 643 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 702 KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK Sbjct: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663 Query: 703 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 759 K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL Sbjct: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723 Query: 760 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 819 ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD Sbjct: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783 Query: 820 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 879 K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC Sbjct: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843 Query: 880 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 939 LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG Sbjct: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903 Query: 940 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 999 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I Sbjct: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963 Query: 1000 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1059 LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS Sbjct: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023 Query: 1060 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1119 GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI Sbjct: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083 Query: 1120 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1179 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV Sbjct: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143 Query: 1180 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1239 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD Sbjct: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203 Query: 1240 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1261 + E G+NK+ EDSSVIHYD+ AI+ Sbjct: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263 Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321 +LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL Sbjct: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323 Query: 1322 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1374 LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF Sbjct: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383 Query: 1375 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1431 +ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP Sbjct: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443 Query: 1432 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1491 QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR Sbjct: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503 Query: 1492 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1547 IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP + Sbjct: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563 Query: 1548 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1593 P + EK G + P L++ E+E++ E P R E+ Sbjct: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623 Query: 1594 ETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEE 1653 ETE PSP E + P K + D++ E+ RGD + + T E E+ Sbjct: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKL-----ELSLIHS-RGDSSELRPDDTKAE--EK 1675 Query: 1654 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIAD 1713 +P++ Q++ ++ E D GK+ED KG K +FMFNIAD Sbjct: 1676 EPIETQQNGDK---EEDDEGKKEDKKG-----------------------KFKFMFNIAD 1709 Query: 1714 GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN 1773 GGFTELHTLWQNEERAA+SSGK+ +IWHRRHDYWLLAGIV HGYARWQDIQND ++ I+N Sbjct: 1710 GGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILN 1769 Query: 1774 EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF 1833 EPFK+E +KGN+LEMKNKFLARRFKLLEQALVIEEQLRRAAYLN++Q+P HPAMAL+AR Sbjct: 1770 EPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARL 1829 Query: 1834 AEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIA 1893 AE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLP+ LSRIPP+A Sbjct: 1830 AEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVA 1889 Query: 1894 ARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQM 1953 ARLQMSERSILSRL ++ + P G + + Y F G NY+QM Sbjct: 1890 ARLQMSERSILSRLTNRAGD----PTIQQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQM 1945 Query: 1954 PAGSFIT 1960 P G ++T Sbjct: 1946 PLGPYVT 1952 >gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sapiens] Length = 1912 Score = 2625 bits (6803), Expect = 0.0 Identities = 1351/1951 (69%), Positives = 1540/1951 (78%), Gaps = 121/1951 (6%) Query: 18 LRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR------ 71 L S PP + P++D L + K+K+ PKK ++ K K +++KK Sbjct: 24 LNNSLPPPHPENEEDPEED---LSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCR 80 Query: 72 ---DSE---EEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG-- 123 DS EF E +E +S+S GS+Y PG+K+++K KKEKK+K ++K E Sbjct: 81 QLGDSSGEGPEFVEEEEEVALRSDSEGSDYT--PGKKKKKKLGPKKEKKSKSKRKEEEEE 138 Query: 124 -DGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPM 182 D E KSSA LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI + Sbjct: 139 EDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAV 198 Query: 183 SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPAL 242 SKMM +LGAKWREFS NNPFKGS+ A AAAAAAA AV E + A A Sbjct: 199 SKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA----------- 247 Query: 243 PPPPAADIQPPPIRRAKTKEGKGPGHKRRSK-SPRVPDGRKKLRGKKMAPLKIKLGLLGG 301 PPPP ++ PIR+AKTKEGKGP +R+ K SPRVPD KK + KK+APLKIKLG G Sbjct: 248 PPPPPVEV---PIRKAKTKEGKGPNARRKPKGSPRVPDA-KKPKPKKVAPLKIKLGGFGS 303 Query: 302 KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG 361 KRK+ S D ESD D S++S S R+ + ++ KKKK Sbjct: 304 KRKRSSSEDDDLDV-------ESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKK--- 353 Query: 362 CPAVAGEEEV---DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKW 418 GEEEV DGYETDHQDYCEVCQQGGEIILCDTCPRAYH+VCLDP++++APEGKW Sbjct: 354 ----KGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 409 Query: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGE--KEEEDDHMEYCRVCKDGGELLCCDACIS 476 SCPHCEKEG+QWEAKE+ E EE EE G +EE+D HME+CRVCKDGGELLCCD C S Sbjct: 410 SCPHCEKEGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPS 469 Query: 477 SYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDV 536 SYHIHCLNPPLP+IPNGEWLCPRCTCP LKG+VQKIL W+WG+PP P P+ D +P+ Sbjct: 470 SYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNT 529 Query: 537 PPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYG 596 P P+PL+GR ER+FFVKW G+SYWHCSW ELQLE+ VM+RNYQRKNDMDEPP D+G Sbjct: 530 PSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFG 589 Query: 597 SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDL 656 E+ KS KRK KDP +AEMEE++YR+GIKPEWM +HRI+NHSVDKKG+ HYL+KWRDL Sbjct: 590 GDEE--KSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDL 647 Query: 657 PYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN 716 PYDQ++WE +++ I +Y+ KQSYW HREL+ GE+ +P K KK K + + PP +PT Sbjct: 648 PYDQASWESEDVEIQDYDLFKQSYWNHRELMRGEE-GRPGKKLKKVKLRKLERPPETPTV 706 Query: 717 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776 DPTVKYE QP ++ ATGGTLH YQ+EGLNWLRFSWAQGTDTILADEMGLGKT+QT VFLY Sbjct: 707 DPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLY 766 Query: 777 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836 SLYKEGH+KGPFLVSAPLSTIINWEREF+MWAP YVVTY GDKDSRAIIRENEFSFEDN Sbjct: 767 SLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDN 826 Query: 837 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896 AI+GGKKA +MK+EA VKFHVLLTSYELITID A LGSI WACL+VDEAHRLKNNQSKFF Sbjct: 827 AIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFF 886 Query: 897 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKL 956 RVLNGY + HKLLLTGTPLQNNLEELFHLLNFLTPERF+NLEGFLEEFADI+KEDQIKKL Sbjct: 887 RVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL 946 Query: 957 HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV 1016 HD+LGPHMLRRLKADVFKNMP+KTELIVRVELSPMQKKYYKYILTRNFEALN+RGGGNQV Sbjct: 947 HDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV 1006 Query: 1017 SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQG 1076 SLLN++MDLKKCCNHPYLFPVAAME+PK+P+G Y+G ALI++SGKL+LLQKML+ LKE G Sbjct: 1007 SLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGG 1066 Query: 1077 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLST 1136 HRVLIFSQMTKMLDLLEDFL++EGYKYERIDGGITG +RQEAIDRFNAPGAQQFCFLLST Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126 Query: 1137 RAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQ 1196 RAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KVMIYRFVTRASVEERITQ Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186 Query: 1197 VAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDE---NEGENKE-EDSSV 1252 VAK+KMMLTHLVVRPGLGSK GSMSKQELDDILKFGTEELFKDE G+NKE EDSSV Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSV 1246 Query: 1253 IHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREED--KIEEIEREIIKQE 1310 IHYD++AI RLLDRNQD TEDT++Q MNEYLSSFKVAQYVVREE+ + EE+EREIIKQE Sbjct: 1247 IHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQE 1306 Query: 1311 ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEY 1363 E+VDPDYWEKLLRHHYEQQQEDLARNLGKGKR+RKQVNYND +QED+ DNQS+Y Sbjct: 1307 ESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDY 1366 Query: 1364 SVGSEEEDEDFDERPEG-RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422 SV SEE DEDFDER E RR S++ LRN+KDKPLPPLLARVGGNIEVLGFN RQRKAFLN Sbjct: 1367 SVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLN 1426 Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREG 1482 A+MR+GMPPQDAFTTQWLVRDLRGK+EKEFKAYVSLFMRHLCEPGADG+ETFADGVPREG Sbjct: 1427 AIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREG 1486 Query: 1483 LSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTP 1542 LSRQ VLTRIGVMSL++KKVQEFEH+NGRWSMPEL A+ + + + S P SP TP Sbjct: 1487 LSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL-----AEVEENKKMSQPGSPSPKTP 1541 Query: 1543 EASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKME-TEADAPS 1601 S + PA P+E G I KEE + EK K++ +E T+A AP+ Sbjct: 1542 TPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPA 1601 Query: 1602 --------PAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGD----REKSATESTP-- 1647 P E++E ++ E P ME EP D EKSA + TP Sbjct: 1602 SEDEKVVVEPPEGEEKVEKAEVKERTEEP-----METEPKGAADVEKVEEKSAIDLTPIV 1656 Query: 1648 GERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPG--PRDEPRSNGRREEKTEKP 1705 E EEK K E+ K + L+ G P+D N +++K K Sbjct: 1657 VEDKEEK-------------------KEEEEKKEVMLQNGETPKD---LNDEKQKKNIKQ 1694 Query: 1706 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1765 RFMFNIADGGFTELH+LWQNEERAA + K EIWHRRHDYWLLAGI+ HGYARWQDIQN Sbjct: 1695 RFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQN 1754 Query: 1766 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHP 1825 D ++AI+NEPFK E N+GNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+S++P+HP Sbjct: 1755 DPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHP 1814 Query: 1826 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPAT 1885 +MAL+ RFAE ECLAESHQHLSKES+AGNKPANAVLHKVL QLEELLSDMKADVTRLPAT Sbjct: 1815 SMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPAT 1874 Query: 1886 LSRIPPIAARLQMSERSILSRLASKGTEPHP 1916 ++RIPP+A RLQMSER+ILSRLA++ EP P Sbjct: 1875 IARIPPVAVRLQMSERNILSRLANRAPEPTP 1905 >gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1 [Homo sapiens] Length = 1828 Score = 581 bits (1497), Expect = e-165 Identities = 416/1218 (34%), Positives = 638/1218 (52%), Gaps = 142/1218 (11%) Query: 547 EREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKNDMDE-------PPPLDYG 596 E ++ +KW G SY H +W E L+ + L N+++K D + P ++Y Sbjct: 304 EIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYF 363 Query: 597 SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKK----GNYHYLVK 652 + + + S+ K Y +E +K T+ + + +K YL K Sbjct: 364 NCQQELASELNK----QYQIVERV---IAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCK 416 Query: 653 WRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPS 712 W LPY + +WE++ + +++ S+ H P + K K++ Sbjct: 417 WMGLPYSECSWEDEALIGKKFQNCIDSF--HSRNNSKTIPTRECKALKQRPRF------- 467 Query: 713 SPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTI 772 V + QP ++ L YQLEGLNWL SW + ILADEMGLGKTIQTI Sbjct: 468 -------VALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTI 520 Query: 773 VFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS 832 FL L+ + GPFL+ PLST+ +W+REF++WAP+ VV Y GD SR IRE E+ Sbjct: 521 SFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWI 580 Query: 833 FEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQ 892 ++KF+ L+T+YE++ D+ LGSI WA L VDEAHRLKN+ Sbjct: 581 HSQTK--------------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDD 626 Query: 893 SKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ 952 S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F E F E+ +E+ Sbjct: 627 SLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENG 685 Query: 953 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG 1012 + LH +L P +LRR+K DV K++PAK E I+RVE+S +QK+YYK+ILTRN++AL Sbjct: 686 YQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTR 745 Query: 1013 GNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072 G+ LNI+M+LKKCCNH YL + E + +G +LI+SSGKL+LL K+L +L Sbjct: 746 GSTSGFLNIVMELKKCCNHCYL--IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRL 803 Query: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 1132 +E+G+RVLIFSQM +MLD+L ++L + Y ++R+DG I G +R++A+D FNA G++ FCF Sbjct: 804 RERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863 Query: 1133 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 1192 LLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ +V IYR VT+ +VEE Sbjct: 864 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923 Query: 1193 RITQVAKRKMMLTHLVV-------RPGLGSKAG-----SMSKQELDDILKFGTEELFKDE 1240 I + AK+KM+L HLV+ R L + +G +K+EL ILKFG E+LFK E Sbjct: 924 EIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK-E 982 Query: 1241 NEGENKEEDSSVIHYDNEAIARLLD--RNQDATEDTDVQNMNEYLSSFKVAQYVVREEDK 1298 EGE E D + I RL + N+ +T TD E LS FKVA + E++ Sbjct: 983 LEGEESEPQ----EMDIDEILRLAETRENEVSTSATD-----ELLSQFKVANFATMEDE- 1032 Query: 1299 IEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA-AQEDQ 1357 EE+E K + + P+ K + Q++ + L + + K+ ND+ + + Sbjct: 1033 -EELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTES 1091 Query: 1358 DNQSEYSVGSEEEDEDFDERPEGRRQSK-RQLRNEKDKPLPPLLARVGGNIEVLGFNTRQ 1416 Q++ S SE E ED D+ + +R+ + R +R + V GF + Sbjct: 1092 KRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDL----------------VEGFTDAE 1135 Query: 1417 RKAFLNAVMRWGMP-------PQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGAD 1469 + F+ A ++G+P +DA V DL+ E + VS + + + Sbjct: 1136 IRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKEN 1195 Query: 1470 GSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSS 1529 SE G R G + + ++ V S+++ + +EFE ++ + DP + K+ Sbjct: 1196 ASEGKGPG-KRRGPTIKISGVQVNVKSIIQHE-EEFEMLH-----KSIPVDP--EEKKKY 1246 Query: 1530 RASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAE-----NQEEKPE 1584 + K + E + E I+T E + + ++KP+ Sbjct: 1247 CLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQ 1306 Query: 1585 KNSRIGEKMETEAD----------APSPAPSLGE--RLEPRK--IPLEDEVPGVPGEMEP 1630 G++++T AD A + GE +L+ RK + E++VP + E Sbjct: 1307 -----GKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGI 1361 Query: 1631 EPGYRGDREKSATESTPGERGEEK-PL-DGQEHRERPEGETGDLGKREDVKGDRELRPG- 1687 E + + E + G EK P+ Q+ +E E + + R+D +GD+E + Sbjct: 1362 ELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1421 Query: 1688 -PRDEPRSNGRREEKTEK 1704 +++P+S + K Sbjct: 1422 DKKEKPKSGDAKSSSKSK 1439 Score = 43.1 bits (100), Expect = 0.003 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 17/142 (11%) Query: 48 KKRKRGPKKQKENKPGKPRKR--------KKRDSEEEFGSERDEYREKS---------ES 90 K +KR P+ +KENK + ++ + D+ E G +D+ EKS E+ Sbjct: 1338 KLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKEN 1397 Query: 91 GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHV 150 ++ RK + +E+K+ K K+ K GD ++S + +T G E V Sbjct: 1398 KENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIG 1457 Query: 151 FSEEDYHTLTNYKAFSQFMRPL 172 E+D + + MRP+ Sbjct: 1458 EDEDDDLDQETFSICKERMRPV 1479 Score = 36.2 bits (82), Expect = 0.33 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 19/194 (9%) Query: 1524 DSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKP 1583 DS S ASS + + EAS ++S S+ + G G + E +E+Q E Sbjct: 12 DSSLHSNASSHSASE----EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSES- 66 Query: 1584 EKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPG-----EMEPEPGYRGDR 1638 E S + +A S ER+ K + +E P V G EP + Sbjct: 67 ESESAGSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVYGVRRSNRSRQEPSRFNIK 125 Query: 1639 EKSATES---TPGERGEEKPLDGQEHRERP---EGETGDLGKRE-DVKGDRELRPGP-RD 1690 E++++ S +P RG+ + ++ ++ P E E G + E + K + RP P R Sbjct: 126 EEASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRT 185 Query: 1691 EPRSNGRREEKTEK 1704 P+ +++ KT++ Sbjct: 186 VPKPRVKKQPKTQR 199 Score = 33.5 bits (75), Expect = 2.1 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 519 EPPVAVPAPQQADGNPDVPP-PRPLQGRSEREFFVKWVGLSYWHCSWAKE 567 E +AV + G D P R +E E+ KW+GL Y CSW E Sbjct: 381 ERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDE 430 Score = 33.1 bits (74), Expect = 2.8 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 1740 WHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANK---GNFLEMKNKFLARR 1796 W D LL GI HGY W+ I+ D + + ++ E +K G L+ + +L Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317 Query: 1797 FKLLEQAL 1804 KLL + L Sbjct: 1318 LKLLRKGL 1325 Score = 31.6 bits (70), Expect = 8.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 644 KGNYHYLVKWRDLPYDQSTWEEDE 667 +G YL+KW+ Y STWE +E Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEE 325 >gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sapiens] Length = 1710 Score = 566 bits (1458), Expect = e-161 Identities = 358/927 (38%), Positives = 527/927 (56%), Gaps = 105/927 (11%) Query: 529 QADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKN 585 +ADG+P+ + + E ++ +KW G S+ H +W E L+ + + NY++K+ Sbjct: 298 EADGDPNAGFEKNKEP-GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 356 Query: 586 DMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRF------GIKPEWMTVHRIINH 639 + KR +K+ ++E YY + ++ V RII H Sbjct: 357 -----------------QETKRWLKNASPEDVE--YYNCQQELTDDLHKQYQIVERIIAH 397 Query: 640 SVDKK--GNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRK 697 S K G Y KW+ LPY + +WE+ + +++ Y+ + P + K Sbjct: 398 SNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQ--SKTTPFKDCK 455 Query: 698 YKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGT-LHMYQLEGLNWLRFSWAQGTD 756 K++ V + QP +I G L YQL GLNWL SW +G Sbjct: 456 VLKQRPRF--------------VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNS 501 Query: 757 TILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTY 816 ILADEMGLGKTIQTI FL L+ E GPFL+ PLST+ +W+RE Q WA + V Y Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVY 561 Query: 817 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 876 GD +SR +IR +E++ ++KF++LLT+YE++ D+A LG + Sbjct: 562 LGDINSRNMIRTHEWTHHQTK--------------RLKFNILLTTYEILLKDKAFLGGLN 607 Query: 877 WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNN 936 WA + VDEAHRLKN+ S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F++ Sbjct: 608 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSS 667 Query: 937 LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY 996 E F EE +E LH L P +LRR+K DV K++PAK E I+R+E+S +QK+YY Sbjct: 668 WEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYY 726 Query: 997 KYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALI 1056 K+ILTRN++AL+ G+ LNIMM+LKKCCNH YL + ++ + + LI Sbjct: 727 KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYL--IKPPDNNEFYNKQEALQHLI 784 Query: 1057 KSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQ 1116 +SSGKL+LL K+L +L+E+G+RVLIFSQM +MLD+L ++L Y + ++R+DG I G LR+ Sbjct: 785 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK 844 Query: 1117 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQA 1176 +A+D FNA G++ FCFLLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ Sbjct: 845 QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK 904 Query: 1177 NKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR------------PGLGSKAGSMSKQE 1224 +V IYR VT+ SVEE I + AK+KM+L HLV++ S + +K+E Sbjct: 905 KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEE 964 Query: 1225 LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLS 1284 L ILKFG EELFK E EGE +E D + I + + +++ E + +E LS Sbjct: 965 LSAILKFGAEELFK-EPEGEEQEPQ----EMDIDEILKRAETHEN--EPGPLTVGDELLS 1017 Query: 1285 SFKVAQYVVREEDKIE-EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343 FKVA + +ED IE E ER EE + D +L +++ E++ L + + Sbjct: 1018 QFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM-LPRMRNC 1076 Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403 KQ+++N E + ++S GS D D EG+R KR + + +P Sbjct: 1077 AKQISFN--GSEGRRSRSRRYSGS-----DSDSISEGKRPKKR----GRPRTIP------ 1119 Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMP 1430 + GF+ + + F+ + ++G P Sbjct: 1120 --RENIKGFSDAEIRRFIKSYKKFGGP 1144 >gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sapiens] Length = 2997 Score = 526 bits (1354), Expect = e-148 Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%) Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608 EF+VK+ SY HC WA LE + + + K ++ Sbjct: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863 Query: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 664 ++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE Sbjct: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919 Query: 665 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720 D+ I E+E+ +M +P R + P D Sbjct: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954 Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780 K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y Sbjct: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012 Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 837 +G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D Sbjct: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070 Query: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897 IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K Sbjct: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119 Query: 898 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 957 L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL Sbjct: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179 Query: 958 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1016 +L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N Sbjct: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239 Query: 1017 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1069 +LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L Sbjct: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299 Query: 1070 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1129 KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + + Sbjct: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359 Query: 1130 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1189 F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S Sbjct: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419 Query: 1190 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1244 E + A K+ L V++ G + + +SK+E++D+L+ G DE + Sbjct: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479 Query: 1245 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1302 +K EED I LL R T +++ + S+F A +V + Sbjct: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525 Query: 1303 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1356 + DP++W+K + + + D+ G+ RVRKQ A +ED Sbjct: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571 Query: 1357 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1383 + + S+ SEE+ RP+ + Q Sbjct: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599 Score = 39.7 bits (91), Expect = 0.030 Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 17/210 (8%) Query: 1526 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1583 K+ S+A K E P T K P P P EK TP K ++ +KP Sbjct: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703 Query: 1584 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642 + S + +K+ S L + P P EDE PGV + R + K Sbjct: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV----QKRRSSRQVKRKRY 759 Query: 1643 TESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDE----PRSNGRR 1698 TE + +E+ D T ++E V + GP E RS ++ Sbjct: 760 TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAE-----GPVVEKIMSSRSVKKQ 814 Query: 1699 EEKTEKPRF-MFNIADGGFTELHTLWQNEE 1727 +E E+ F + F+ LH W + E Sbjct: 815 KESGEEVEIEEFYVKYKNFSYLHCQWASIE 844 Score = 32.7 bits (73), Expect = 3.7 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 254 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 310 P + KE K P + K+P++P K+ + K P K K +K + + Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711 Query: 311 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 370 + ++G +E SDLD S D +K + R ++K+ +EE Sbjct: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771 Query: 371 VDGYETDHQD 380 D + +D Sbjct: 772 ADDADAAGRD 781 >gi|114326455 chromodomain helicase DNA binding protein 8 [Homo sapiens] Length = 2302 Score = 514 bits (1325), Expect = e-145 Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%) Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608 EFFVK+ SY HC WA QLE + + + K M Sbjct: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426 Query: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 663 + H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW Sbjct: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482 Query: 664 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 722 E +++++ + E K+ RH EL + +P+ KK EL + Y Sbjct: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526 Query: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782 + + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G Sbjct: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578 Query: 783 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842 GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ + Sbjct: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636 Query: 843 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 902 A+ KF L+T++E+I D L I W C+++DEAHRLKN K L Sbjct: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688 Query: 903 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 962 ++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P Sbjct: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748 Query: 963 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1020 MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN Sbjct: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807 Query: 1021 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073 MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK Sbjct: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867 Query: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133 GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL Sbjct: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927 Query: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193 L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E Sbjct: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987 Query: 1194 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1246 + A K+ L V+ R G + SK+E++D+L+ G +E++ +K Sbjct: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047 Query: 1247 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306 EED I LL R T +++ + S+F A +V E ++ Sbjct: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090 Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1358 DP++W+K + + DL +L K RVRKQ + ++D Sbjct: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135 Query: 1359 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + S+ E ED DERP RR + D Sbjct: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166 >gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sapiens] Length = 2715 Score = 514 bits (1325), Expect = e-145 Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%) Query: 550 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 609 F+VK+ SY HC WA +LE + + + +N + + Sbjct: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361 Query: 610 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 664 + E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE Sbjct: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413 Query: 665 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 724 +E DPA+ ++++ + L P +D K E Sbjct: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451 Query: 725 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784 + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G Sbjct: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508 Query: 785 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 841 GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G Sbjct: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566 Query: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901 KFHV++T++E+I D L I W+C+++DEAHRLKN K L Sbjct: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616 Query: 902 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 961 ++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L Sbjct: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676 Query: 962 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1020 P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N Sbjct: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736 Query: 1021 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K Sbjct: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F Sbjct: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E Sbjct: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914 Query: 1192 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1247 + A K+ L V+ R G + +SK E++D+L+ G DE + +K Sbjct: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973 Query: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1307 + E I ++L R T +Q+ + S+F A +V ++ Sbjct: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018 Query: 1308 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1362 DP++W+K L + ++E L + RVRKQ + ++ +ED+ E Sbjct: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067 Query: 1363 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422 +S E D D DERP R+L ++ + L RV N+ + G+ R + + Sbjct: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118 Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1470 +W + +D + + R L K +K + F+ L P DG Sbjct: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165 Score = 33.1 bits (74), Expect = 2.8 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 100 KRKR PK+ KE + K K+ K E + + R+ E+ G++ + Sbjct: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178 Query: 101 RKRRRKHREKKEKKTKRRKKGE 122 K R+ +E+ +++KKG+ Sbjct: 179 TKSRKASKEQGPTPVEKKKKGK 200 Score = 31.6 bits (70), Expect = 8.1 Identities = 20/74 (27%), Positives = 33/74 (44%) Query: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 108 ++ + PKK KE+K K + K+ + S E +EK S T + + + Sbjct: 131 RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGP 190 Query: 109 EKKEKKTKRRKKGE 122 EKK K ++K E Sbjct: 191 TPVEKKKKGKRKSE 204 >gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sapiens] Length = 2881 Score = 505 bits (1300), Expect = e-142 Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%) Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608 EFFVK+ SY HC WA E QL + + Q+K + R+ Sbjct: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753 Query: 609 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 662 + H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST Sbjct: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809 Query: 663 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 719 WE ++++++ + EE +Q + P R D PPS+ D + Sbjct: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851 Query: 720 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 779 Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY + Sbjct: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903 Query: 780 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839 G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ + Sbjct: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961 Query: 840 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899 + A++ F ++T++E+I L +I W C+++DEAHRLKN K L Sbjct: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013 Query: 900 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 959 ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL + Sbjct: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1018 L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133 Query: 1019 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K Sbjct: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 +K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F Sbjct: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E Sbjct: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1245 + A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG Sbjct: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373 Query: 1246 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1304 EED I LL R + T +++ + S+F A +V ++ Sbjct: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418 Query: 1305 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1362 DP++W+K + + RN + R+RKQ A +++ S Sbjct: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468 Query: 1363 YSVGSEEEDEDFDERPEGRRQSKR 1386 E + + DE+P+ RR R Sbjct: 1469 ------EAESEGDEKPKLRRPCDR 1486 Score = 32.3 bits (72), Expect = 4.8 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 1516 ELMPDPSADSKRSSRASSPTKTSPTTP-------EASATNSPCTSKPATPAPSEKGEGIR 1568 E D +DS+RSS +S + +S ++ +S+++S C+S ++ + S Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188 Query: 1569 TPLEKEEAENQEEKPEK 1585 + EE+++ EE+ +K Sbjct: 2189 SSSSSEESDSDEEEAQK 2205 Score = 31.6 bits (70), Expect = 8.1 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 1215 SKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDT 1274 S + S S +EE DE E + +E + + YD E++A L QD T+D+ Sbjct: 2175 SSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVAS-LSTTQDETQDS 2233 Query: 1275 DVQN 1278 N Sbjct: 2234 FQMN 2237 >gi|164419749 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform b [Homo sapiens] Length = 1042 Score = 444 bits (1141), Expect = e-124 Identities = 275/798 (34%), Positives = 436/798 (54%), Gaps = 65/798 (8%) Query: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743 + LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190 Query: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803 LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250 Query: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863 F+ W P V+ + GDKD+RA D + G ++ V +TSYE Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291 Query: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923 ++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351 Query: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980 LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411 Query: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040 E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469 Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100 P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526 Query: 1101 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNP 1160 Y+Y R+DG R+EAI+ FNAP + +F F+LSTRAGGLGINLA+AD VI++DSDWNP Sbjct: 527 YEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 586 Query: 1161 HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG 1218 D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V++ G + ++ Sbjct: 587 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 646 Query: 1219 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1278 ++K+E+ +++ G +F + E+ ++++ + A + +R Q E + Sbjct: 647 KLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGE----SS 702 Query: 1279 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR--- 1335 + + + + Y ED E++ + E ++P E+ + + + R Sbjct: 703 LRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSE 759 Query: 1336 -NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDEDFDERPEGRRQS 1384 + K R KQ N D E + ++G + + D +R+ Sbjct: 760 PKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREE 819 Query: 1385 KRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGMPPQDAFTTQWLV 1441 ++++ + +PL P + GF R F+ A ++G D + Sbjct: 820 QKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN-----IA 872 Query: 1442 RDLRGKTEKEFKAYVSLF 1459 R++ GK+ +E Y ++F Sbjct: 873 REVEGKSPEEVMEYSAVF 890 >gi|21071044 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform a [Homo sapiens] Length = 1054 Score = 435 bits (1118), Expect = e-121 Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%) Query: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743 + LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190 Query: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803 LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250 Query: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863 F+ W P V+ + GDKD+RA D + G ++ V +TSYE Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291 Query: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923 ++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351 Query: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980 LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411 Query: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040 E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469 Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100 P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526 Query: 1101 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1148 Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A Sbjct: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586 Query: 1149 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1208 D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V Sbjct: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646 Query: 1209 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1266 ++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R Sbjct: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706 Query: 1267 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1326 Q E ++ + + + Y ED E++ + E ++P E+ + Sbjct: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759 Query: 1327 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1372 + + R + K R KQ N D E + ++G + + Sbjct: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819 Query: 1373 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1429 D +R+ ++++ + +PL P + GF R F+ A ++G Sbjct: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877 Query: 1430 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1459 D + R++ GK+ +E Y ++F Sbjct: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902 >gi|21071058 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a5 [Homo sapiens] Length = 1052 Score = 422 bits (1085), Expect = e-117 Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%) Query: 698 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 754 Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G Sbjct: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198 Query: 755 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 814 + ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258 Query: 815 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 874 GDK+ RA +F + + G+ + V +TSYE++ +++ Sbjct: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299 Query: 875 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934 W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359 Query: 935 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 991 N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419 Query: 992 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1051 Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + + Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477 Query: 1052 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1111 L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG Sbjct: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534 Query: 1112 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1171 RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH Sbjct: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594 Query: 1172 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1229 RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++ Sbjct: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654 Query: 1230 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1286 + G +F + E E +ED I +L+R T + MNE LS Sbjct: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698 Query: 1287 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1336 + + + E + E E ++++ ++P E+ + + + R Sbjct: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758 Query: 1337 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1388 K R KQ N D + + + E + PE + Q + QL Sbjct: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818 Query: 1389 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1445 + ++ + L + GF N R F+ A +WG + + R++ Sbjct: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873 Query: 1446 GKTEKEFKAYVSLF 1459 GKT +E Y ++F Sbjct: 874 GKTPEEVIEYSAVF 887 >gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo sapiens] Length = 897 Score = 410 bits (1053), Expect = e-114 Identities = 257/667 (38%), Positives = 376/667 (56%), Gaps = 47/667 (7%) Query: 732 TGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVS 791 TG L YQLEG+NWL + IL DEMGLGKT QTI L + +GPFL+ Sbjct: 42 TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLIL 101 Query: 792 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851 PLS + NW+ E Q +AP VTY GDK+ RA ++++ +K+E+ Sbjct: 102 CPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------------LKQES 144 Query: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911 +FHVLLT+YE+ D + L S W+ LVVDEAHRLKN S + L+ + + LLLT Sbjct: 145 --RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLT 202 Query: 912 GTPLQNNLEELFHLLNFLTPERFNNLE--GFLEEFADISKEDQ-IKKLHDLLGPHMLRRL 968 GTP+QN+L+EL+ LL+F+ P+ F+ E F++ + DI KE + +LH LL P +LRR+ Sbjct: 203 GTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV 262 Query: 969 KADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKC 1028 KA+V +P KTE+++ +S +QKKYYK IL ++ +A + +V L NI+ L+KC Sbjct: 263 KAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETA-KKVKLQNILSQLRKC 321 Query: 1029 CNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKM 1088 +HPYLF E ++ G L ++SGKL LL K+L L GHRVL+FSQMT+M Sbjct: 322 VDHPYLFDGVEPEPFEV------GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQM 375 Query: 1089 LDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ-FCFLLSTRAGGLGINLAT 1147 LD+L+D++DY GY YER+DG + G R AI F G Q F FLLSTRAGG+G+NL Sbjct: 376 LDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQPIFVFLLSTRAGGVGMNLTA 432 Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207 ADTVI DSD+NP ND+QA +RAHRIGQ V + R + R +VEE + + A K+ LT++ Sbjct: 433 ADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNM 492 Query: 1208 VVRPG---LGS-KAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVI--HYDNEAIA 1261 ++ G LG+ K + + +L +ILKFG ++L E ++ + S++ D + ++ Sbjct: 493 IIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVS 552 Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321 L + + D + + YL K +ED R+ +Q N+ EK Sbjct: 553 DALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKED------RKSFEQLVNLQKTLLEKA 606 Query: 1322 LRHHYEQQQED--LARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPE 1379 + + + L L +G RK+V + ++ Q + E + E+ + E Sbjct: 607 SQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKE 666 Query: 1380 GRRQSKR 1386 K+ Sbjct: 667 EAEHKKK 673 >gi|192807316 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform D [Homo sapiens] Length = 1616 Score = 407 bits (1045), Expect = e-113 Identities = 306/957 (31%), Positives = 463/957 (48%), Gaps = 120/957 (12%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249 E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261 Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306 D+E + +++ R++ D D+ E + K ++ E +E+ I Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314 Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366 IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++ Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362 Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426 E+ +E E RQ K + ++D + G + +R + + Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412 Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486 G PP + + K+ K V +++ G SE F R+ L Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1466 Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546 L R V KK++E + S+ +L D + + + + S ++ Sbjct: 1467 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1521 Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606 S TS +R +EKE+ EE E+ E E+E+ + L Sbjct: 1522 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1568 Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663 G RK +D + G G P RG R K E +E+ G E Sbjct: 1569 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1615 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|192807320 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform F [Homo sapiens] Length = 1613 Score = 405 bits (1040), Expect = e-112 Identities = 306/957 (31%), Positives = 461/957 (48%), Gaps = 123/957 (12%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249 E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261 Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306 D+E + +++ R++ D D+ E + K ++ E +E+ I Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314 Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366 IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358 Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426 E+ +E E RQ K + ++D + G + +R + + Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409 Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486 G PP + + K+ K V +++ G SE F R+ L Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1463 Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546 L R V KK++E + S+ +L D + + + + S ++ Sbjct: 1464 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1518 Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606 S TS +R +EKE+ EE E+ E E+E+ + L Sbjct: 1519 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1565 Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663 G RK +D + G G P RG R K E +E+ G E Sbjct: 1566 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1612 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|192807314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform C [Homo sapiens] Length = 1617 Score = 403 bits (1035), Expect = e-111 Identities = 305/958 (31%), Positives = 464/958 (48%), Gaps = 121/958 (12%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249 E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261 Query: 1250 SSVIHYDNEAIARLLDRNQDATE---DTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306 D+E + +++ R+++ + D+ E + K ++ E+ E+ I Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED----ELPSWI 1314 Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366 IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++ Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362 Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426 E+ +E E RQ K + ++D + G + +R + + Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412 Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485 G PP + + K+ K V +++ G SE F R+ L Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1466 Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545 L R V KK++E + S+ +L D + + + + S ++ Sbjct: 1467 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1521 Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605 S TS +R +EKE+ EE E+ E E+E+ + Sbjct: 1522 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1568 Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663 LG RK +D + G G P RG R K E +E+ G E Sbjct: 1569 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1616 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|48255898 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b [Homo sapiens] Length = 1572 Score = 402 bits (1033), Expect = e-111 Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%) Query: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705 +S EE + + E +E ++S + E + DP +K K++ Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691 Query: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763 G S T + + + GTL YQL+GL W+ + + ILADEM Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751 Query: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823 GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811 Query: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883 + ++ GK F+VLLT+YE I D+ L IRW ++VD Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851 Query: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942 E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F + Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911 Query: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989 F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971 Query: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041 +QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031 Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101 +G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + + Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091 Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161 Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151 Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221 D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211 Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276 ++ L IL E+E EN+EED D+E + +++ R + D D+ Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258 Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336 E + K ++ E +E+ IIK + V+ R E+++E + Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303 Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396 G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354 Query: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456 ++ A R G PP + + K K+ A + Sbjct: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391 Query: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516 + + G SE F R+ L L R V KK++E + S+ + Sbjct: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448 Query: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576 L D + + + S ++ S S A E+ E E+EE Sbjct: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506 Query: 1577 ENQEEKPEKNSRIGEKMETEAD 1598 E + E K+ ++ K+ + D Sbjct: 1507 EEESESEAKSVKVKIKLNKKDD 1528 >gi|192807318 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform E [Homo sapiens] Length = 1614 Score = 401 bits (1030), Expect = e-111 Identities = 306/958 (31%), Positives = 461/958 (48%), Gaps = 124/958 (12%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249 E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261 Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306 D+E + +++ R++ D D+ E + K ++ E +E+ I Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314 Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366 IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358 Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426 E+ +E E RQ K + ++D + G + +R + + Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409 Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485 G PP + + K+ K V +++ G SE F R+ L Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1463 Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545 L R V KK++E + S+ +L D + + + + S ++ Sbjct: 1464 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1518 Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605 S TS +R +EKE+ EE E+ E E+E+ + Sbjct: 1519 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1565 Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663 LG RK +D + G G P RG R K E +E+ G E Sbjct: 1566 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1613 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|48255900 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform a [Homo sapiens] Length = 1590 Score = 401 bits (1030), Expect = e-111 Identities = 269/778 (34%), Positives = 398/778 (51%), Gaps = 98/778 (12%) Query: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705 +S EE + + E +E ++S + E + DP +K K++ Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691 Query: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763 G S T + + + GTL YQL+GL W+ + + ILADEM Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751 Query: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823 GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811 Query: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883 + ++ GK F+VLLT+YE I D+ L IRW ++VD Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851 Query: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942 E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F + Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911 Query: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989 F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971 Query: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041 +QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031 Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101 +G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + + Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091 Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161 Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151 Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221 D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211 Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276 ++ L IL E+E EN+EED D+E + +++ R + D D+ Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258 Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336 E + K ++ E +E+ IIK + V+ R E+++E + Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303 Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDK 1394 G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK 1354 >gi|192807312 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 393 bits (1009), Expect = e-108 Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235 E+I AK K+ + V++ G+ + S ++ L IL+ ++ Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271 Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283 + D E KEED D+E + +++ R++ D D+ E Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328 Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343 + K ++ E +E+ IIK + V+ R E+++E + G+G R Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373 Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403 RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D + Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419 Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463 G + +R + + G PP + + K+ K V +++ Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473 Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522 G SE F R+ L L R V KK++E + S+ +L D Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530 Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582 + + + + S ++ S TS +R +EKE+ EE Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575 Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642 E+ E E+E+ + LG RK +D + G G P RG R K Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625 Query: 1643 TESTPGERGEEKPLDGQEHRE 1663 E +E+ G E Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|21071056 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 393 bits (1009), Expect = e-108 Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235 E+I AK K+ + V++ G+ + S ++ L IL+ ++ Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271 Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283 + D E KEED D+E + +++ R++ D D+ E Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328 Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343 + K ++ E +E+ IIK + V+ R E+++E + G+G R Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373 Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403 RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D + Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419 Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463 G + +R + + G PP + + K+ K V +++ Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473 Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522 G SE F R+ L L R V KK++E + S+ +L D Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530 Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582 + + + + S ++ S TS +R +EKE+ EE Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575 Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642 E+ E E+E+ + LG RK +D + G G P RG R K Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625 Query: 1643 TESTPGERGEEKPLDGQEHRE 1663 E +E+ G E Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|192807323 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform A [Homo sapiens] Length = 1679 Score = 388 bits (997), Expect = e-107 Identities = 310/1006 (30%), Positives = 465/1006 (46%), Gaps = 155/1006 (15%) Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793 G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811 Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853 LST+ NW EF WAP V+Y G +R +AF + + Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851 Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912 KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911 Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959 TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH + Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971 Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014 L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031 Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 +L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211 Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235 E+I AK K+ + V++ G+ + S ++ L IL+ ++ Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271 Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283 + D E KEED D+E + +++ R++ D D+ E Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328 Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343 + K ++ E +E+ IIK + V+ R E+++E + G+G R Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373 Query: 1344 RKQVNYNDAAQEDQ-----------DNQSEYSVGSE--------------EEDEDFDERP 1378 RK+V+Y+D+ E Q D S + G + E+ +E Sbjct: 1374 RKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIE 1433 Query: 1379 EGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQ 1438 E RQ K + ++D + G + +R + + G PP + + Sbjct: 1434 EEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN 1486 Query: 1439 WLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSRQQVLTRIGVMSL 1497 K+ K V +++ G SE F R+ L L R V Sbjct: 1487 ------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF- 1539 Query: 1498 VKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPAT 1557 KK++E + S+ +L D + + + + S ++ S TS Sbjct: 1540 --KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIVLQSVFTS---- 1591 Query: 1558 PAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPL 1617 +R +EKE+ EE E+ E E+E+ + LG RK Sbjct: 1592 ---------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLG-----RKEKA 1637 Query: 1618 EDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663 +D + G G P RG R K E +E+ G E Sbjct: 1638 QDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1678 Score = 38.5 bits (88), Expect = 0.067 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%) Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285 TE K ENE KE ++ D E +L+D+ +D + TD V N+ E + Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570 Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333 K AQ ++ K ++ + E + Q + PD E L H E + Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629 Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393 + K ++ + N + + SE S EEE+E+ +E+P+ + + +K Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689 Query: 1394 KPLP 1397 P P Sbjct: 690 IPDP 693 Score = 32.0 bits (71), Expect = 6.2 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628 +K++AEN E + GE ++ E S P +E KI + P + + Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643 Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674 E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ + Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 >gi|21914927 helicase, lymphoid-specific [Homo sapiens] Length = 838 Score = 290 bits (742), Expect = 1e-77 Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%) Query: 711 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 770 P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q Sbjct: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257 Query: 771 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830 I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N Sbjct: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316 Query: 831 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889 + KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K Sbjct: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360 Query: 890 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 949 N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+ Sbjct: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419 Query: 950 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995 ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ + Sbjct: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479 Query: 996 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1034 Y I+ R + +R N + + +L+K + P + Sbjct: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539 Query: 1035 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1074 A+ +P E +K +MLL+K +L Sbjct: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596 Query: 1075 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1117 + LI +M ++M +L+ +DY + + R+DG ++ + R++ Sbjct: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656 Query: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177 + FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ Sbjct: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715 Query: 1178 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1234 V++YR VT +++++I + A K L L++ G ++G ++SK LD K E Sbjct: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773 Query: 1235 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1290 L + E E K VI ++ + LLDR+ + + E + FK+ + Sbjct: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827 >gi|190358536 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a [Homo sapiens] Length = 1028 Score = 271 bits (692), Expect = 6e-72 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%) Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051 +MM L+K NHP L P +P L E Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 >gi|190358532 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a [Homo sapiens] Length = 1028 Score = 271 bits (692), Expect = 6e-72 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%) Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051 +MM L+K NHP L P +P L E Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 >gi|190358534 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform b [Homo sapiens] Length = 1026 Score = 268 bits (684), Expect = 5e-71 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%) Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773 Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051 +MM L+K NHP L P +P L E Sbjct: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833 Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893 Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952 Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997 >gi|4557565 excision repair cross-complementing rodent repair deficiency, complementation group 6 [Homo sapiens] Length = 1493 Score = 261 bits (666), Expect = 6e-69 Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%) Query: 699 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 758 K+K+ +L+ D S D K P F+ L YQ G+ WL Q I Sbjct: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529 Query: 759 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 808 L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W Sbjct: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589 Query: 809 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 868 P F V AI+ E K K+ R+ +L+TSY I + Sbjct: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631 Query: 869 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 928 Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F Sbjct: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691 Query: 929 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 973 + P + L F+E+F+ + Q+K L D + P++LRR+K+DV Sbjct: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751 Query: 974 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1029 ++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C Sbjct: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806 Query: 1030 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087 NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ + Sbjct: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866 Query: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147 MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL Sbjct: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925 Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207 A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+ Sbjct: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985 Query: 1208 VVR 1210 V++ Sbjct: 986 VLK 988 Score = 32.7 bits (73), Expect = 3.7 Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 34/156 (21%) Query: 1551 CTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERL 1610 C + A AP+ P+ + KP K +R+ K E ++L Sbjct: 290 CNKRAARKAPA--------PVTPPAPVQNKNKPNKKARVLSKKEERLKKHI------KKL 335 Query: 1611 EPRKIPLEDEVPGVPGEMEP-----EPGYRGDREKSATESTPGERGEEKPLDGQEHRERP 1665 + R + + +V G+P P P GD E +E P E EE E + Sbjct: 336 QKRALQFQGKV-GLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEE------EEDDEV 388 Query: 1666 EGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK 1701 EG DL D EL+P P+ G+R++K Sbjct: 389 EGAEADLSGDGT---DYELKPLPK-----GGKRQKK 416 >gi|58219008 RAD26L hypothetical protein [Homo sapiens] Length = 712 Score = 219 bits (557), Expect = 3e-56 Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%) Query: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 783 L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G Sbjct: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193 Query: 784 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830 K FL+ APLS + NW+ E W Sbjct: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231 Query: 831 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 890 F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN Sbjct: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290 Query: 891 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 950 +++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D + Sbjct: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350 Query: 951 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995 Q +++L + LRR K + +P K + +V L+ QK Sbjct: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410 Query: 996 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1032 Y+ +L L NS G + L+ + L+K NH Sbjct: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470 Query: 1033 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071 L A+ K A+E + K SGK+ +LQ++L Sbjct: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530 Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131 ++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C Sbjct: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590 Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191 L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE Sbjct: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649 Query: 1192 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1245 E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G Sbjct: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704 Query: 1246 KEED 1249 +D Sbjct: 705 LTKD 708 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,745,774 Number of Sequences: 37866 Number of extensions: 5265591 Number of successful extensions: 60917 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 496 Number of HSP's successfully gapped in prelim test: 1098 Number of HSP's that attempted gapping in prelim test: 35097 Number of HSP's gapped (non-prelim): 21425 length of query: 2000 length of database: 18,247,518 effective HSP length: 117 effective length of query: 1883 effective length of database: 13,817,196 effective search space: 26017780068 effective search space used: 26017780068 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.