Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KIAA1217 Sequence: fasta or formatted (1943aa) NCBI GI: 50843820
Description:

sickle tail isoform 1

Referenced in:

Synapses

Other entries for this name:
alt prot [1264aa] sickle tail isoform 2
alt prot [1309aa] sickle tail isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9        135           2
 C cysteine            0.6         11           1
 D aspartate           4.7         91           2
 E glutamate           8.5        166           7
 F phenylalanine       2.0         38           2
 G glycine             5.1        100           2
 H histidine           2.9         56           2
 I isoleucine          3.7         71           3
 K lysine              6.7        131           3
 L leucine             6.7        131           2
 M methionine          3.4         66           3
 N asparagine          3.8         74           3
 P proline             8.7        169           8
 Q glutamine           5.1         99           2
 R arginine            5.9        114           2
 S serine             11.9        231           5
 T threonine           6.4        124           3
 V valine              4.9         95           3
 W tryptophan          0.2          3           1
 Y tyrosine            2.0         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sickle tail isoform 1 
KIAA1217              0.563   sickle tail isoform 3 
KIAA1217              0.542   sickle tail isoform 2 
SNIP                  0.163   SNAP25-interacting protein 
DPCR1                 0.010   diffuse panbronchiolitis critical region 1 protein ...
LOC100294236          0.010   PREDICTED: similar to diffuse panbronchiolitis crit...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
LOC100133756          0.010   PREDICTED: hypothetical protein, partial 
SRRM2                 0.009   splicing coactivator subunit SRm300 
NCOR1                 0.009   nuclear receptor co-repressor 1 
ZNF828                0.009   zinc finger protein 828 
SPTY2D1               0.009   SPT2, Suppressor of Ty, domain containing 1 
LOC100133280          0.008   PREDICTED: similar to Putative POM121-like protein ...
WIPF1                 0.008   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.008   WAS/WASL interacting protein family, member 1 
NOLC1                 0.008   nucleolar and coiled-body phosphoprotein 1 
SRRM1                 0.007   serine/arginine repetitive matrix 1 
PCLO                  0.007   piccolo isoform 2 
PCLO                  0.007   piccolo isoform 1 
PRG4                  0.007   proteoglycan 4 isoform D 
PRG4                  0.007   proteoglycan 4 isoform C 
PRG4                  0.007   proteoglycan 4 isoform B 
PRG4                  0.007   proteoglycan 4 isoform A 
NACA                  0.007   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
SETD1A                0.007   SET domain containing 1A 
NEFH                  0.007   neurofilament, heavy polypeptide 200kDa 
AFF4                  0.007   ALL1 fused gene from 5q31 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press