Guide to the Human Genome
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Name: RBM10 Sequence: fasta or formatted (930aa) NCBI GI: 20127479
Description:

RNA binding motif protein 10 isoform 1

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [852aa] RNA binding motif protein 10 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         77           3
 C cysteine            0.6          6           1
 D aspartate           5.6         52           2
 E glutamate           9.1         85           7
 F phenylalanine       1.6         15           1
 G glycine             8.5         79           2
 H histidine           2.2         20           1
 I isoleucine          3.1         29           2
 K lysine              5.4         50           2
 L leucine             6.8         63           2
 M methionine          1.9         18           1
 N asparagine          3.0         28           1
 P proline             5.7         53           2
 Q glutamine           7.4         69           2
 R arginine            7.3         68           6
 S serine             10.1         94           3
 T threonine           5.1         47           1
 V valine              2.8         26           1
 W tryptophan          0.9          8           1
 Y tyrosine            4.6         43           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 10 isoform 1 
RBM10                 0.849   RNA binding motif protein 10 isoform 2 
RBM5                  0.441   RNA binding motif protein 5 
RBM6                  0.091   RNA binding motif protein 6 
AGGF1                 0.018   angiogenic factor VG5Q 
GPATCH2               0.017   G patch domain containing 2 
SFRS14                0.015   splicing factor, arginine/serine-rich 14 
SFRS14                0.015   splicing factor, arginine/serine-rich 14 
TFIP11                0.015   tuftelin interacting protein 11 
TFIP11                0.015   tuftelin interacting protein 11 
SF4                   0.013   splicing factor 4 
ZFR                   0.013   zinc finger RNA binding protein 
NCL                   0.013   nucleolin 
POLR2A                0.013   DNA-directed RNA polymerase II A 
RBM23                 0.012   RNA binding motif protein 23 isoform 1 
CCDC55                0.012   coiled-coil domain containing 55 isoform 1 
MUC21                 0.012   mucin 21 
CCDC75                0.012   coiled-coil domain containing 75 
ELAVL1                0.011   ELAV-like 1 
RBM23                 0.011   RNA binding motif protein 23 isoform 2 
RNASEN                0.011   ribonuclease III, nuclear isoform 2 
GPATCH8               0.011   G patch domain containing 8 
RBM19                 0.010   RNA binding motif protein 19 
RBM19                 0.010   RNA binding motif protein 19 
RBM19                 0.010   RNA binding motif protein 19 
HRC                   0.010   histidine rich calcium binding protein precursor [Hom...
ARID1A                0.010   AT rich interactive domain 1A isoform a 
ARID1A                0.010   AT rich interactive domain 1A isoform b 
FAM133B               0.010   hypothetical protein LOC257415 isoform 2 
FAM133B               0.010   hypothetical protein LOC257415 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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