Guide to the Human Genome
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Name: MDFI Sequence: fasta or formatted (246aa) NCBI GI: 5031905
Description:

MyoD family inhibitor

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         20           2
 C cysteine           11.8         29           5
 D aspartate           5.7         14           1
 E glutamate           6.1         15           2
 F phenylalanine       1.2          3           1
 G glycine            10.6         26           2
 H histidine           2.0          5           1
 I isoleucine          2.4          6           1
 K lysine              2.4          6           2
 L leucine            10.6         26           2
 M methionine          1.2          3           1
 N asparagine          2.0          5           1
 P proline             8.9         22           1
 Q glutamine           4.9         12           1
 R arginine            1.6          4           2
 S serine             11.0         27           3
 T threonine           5.7         14           2
 V valine              2.8          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MyoD family inhibitor 
MDFIC                 0.288   MyoD family inhibitor domain containing protein isof...
LOC100128160          0.071   PREDICTED: similar to mCG127065 
LOC100128160          0.071   PREDICTED: similar to mCG127065 
LOC100128160          0.071   PREDICTED: similar to mCG127065 
KRTAP5-4              0.049   keratin associated protein 5-4 
KRTAP5-11             0.043   keratin associated protein 5-11 
KRTAP5-6              0.043   keratin associated protein 5-6 
KRTAP5-7              0.043   keratin associated protein 5-7 
KRTAP5-10             0.041   keratin associated protein 5-10 
KRTAP5-2              0.041   keratin associated protein 5-2 
KRTAP5-8              0.041   keratin associated protein 5-8 
KRTAP10-12            0.039   keratin associated protein 10-12 
KRTAP5-1              0.039   keratin associated protein 5-1 
KRTAP5-9              0.039   keratin associated protein 5-9 
ZFHX4                 0.037   zinc finger homeodomain 4 
KRTAP10-10            0.036   keratin associated protein 10-10 
KRTAP10-11            0.034   keratin associated protein 10-11 
KRTAP10-6             0.034   keratin associated protein 10-6 
KRTAP10-4             0.034   keratin associated protein 10-4 
KRTAP5-3              0.034   keratin associated protein 5-3 
KRTAP10-7             0.032   keratin associated protein 10-7 
KRTAP17-1             0.030   keratin associated protein 17-1 
ZNF469                0.030   zinc finger protein 469 
KRTAP4-1              0.030   keratin associated protein 4-1 
KRTAP10-2             0.028   keratin associated protein 10-2 
MEGF11                0.028   multiple EGF-like-domains 11 
PCDH10                0.026   protocadherin 10 isoform 1 precursor 
PCDH10                0.026   protocadherin 10 isoform 2 precursor 
LOC728318             0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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