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Search of human proteins with 49533621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49533621 hypothetical protein LOC150383 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49533621 hypothetical protein LOC150383 [Homo sapiens] 261 1e-70
gi|83641876 serine carboxypeptidase vitellogenic-like [Homo sapi... 30 0.35
gi|83641874 serine carboxypeptidase vitellogenic-like [Homo sapi... 30 0.35
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 29 1.0
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 28 1.8
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 28 1.8
gi|215820619 zinc finger protein 646 [Homo sapiens] 27 3.9
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 27 3.9
gi|116292172 lipid storage droplet protein 5 [Homo sapiens] 27 3.9
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 27 3.9
gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase... 27 5.1
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 27 5.1
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 26 8.7
gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens] 26 8.7
gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens] 26 8.7
gi|4507483 thrombomodulin precursor [Homo sapiens] 26 8.7
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 26 8.7
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 26 8.7
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 26 8.7
>gi|49533621 hypothetical protein LOC150383 [Homo sapiens]
Length = 123
Score = 261 bits (666), Expect = 1e-70
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MASHVECRPLGVFECELCTLTAPYSYVGQKPPNTQSMVLLEESYVMKDPFTSDKDRFLVL 60
MASHVECRPLGVFECELCTLTAPYSYVGQKPPNTQSMVLLEESYVMKDPFTSDKDRFLVL
Sbjct: 1 MASHVECRPLGVFECELCTLTAPYSYVGQKPPNTQSMVLLEESYVMKDPFTSDKDRFLVL 60
Query: 61 GSCCSLCSRLVCVGPECSLFYSKRFCLPCVRENINAFPQEIRQDLEKRKAPSKRTPSQPG 120
GSCCSLCSRLVCVGPECSLFYSKRFCLPCVRENINAFPQEIRQDLEKRKAPSKRTPSQPG
Sbjct: 61 GSCCSLCSRLVCVGPECSLFYSKRFCLPCVRENINAFPQEIRQDLEKRKAPSKRTPSQPG 120
Query: 121 SRT 123
SRT
Sbjct: 121 SRT 123
>gi|83641876 serine carboxypeptidase vitellogenic-like [Homo
sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 0.35
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 51 TSDKDRFLVLGSCCSLCSRLVCVGPECSLFYSKRFCLPCVRENIN 95
TSD F + C + + L C PE L+Y K LP VR+ I+
Sbjct: 299 TSDPSYFQNVTGCSNYYNFLRCTEPEDQLYYVKFLSLPEVRQAIH 343
>gi|83641874 serine carboxypeptidase vitellogenic-like [Homo
sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 0.35
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 51 TSDKDRFLVLGSCCSLCSRLVCVGPECSLFYSKRFCLPCVRENIN 95
TSD F + C + + L C PE L+Y K LP VR+ I+
Sbjct: 299 TSDPSYFQNVTGCSNYYNFLRCTEPEDQLYYVKFLSLPEVRQAIH 343
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 28.9 bits (63), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 63 CCSLCSRLV--CVGPECSLFYSKRFCLPCVRENINA 96
CC++C + +C S +FC PC RE+I A
Sbjct: 714 CCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 749
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 49 PFTSDKDRFLVLGSCCSLCSRLVCVGPECSLFYSKRFCLPC 89
P + ++L+ CCSLC + +C+ F ++ CLPC
Sbjct: 23 PTACREKQYLINSQCCSLCQPGQKLVSDCTEF-TETECLPC 62
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 49 PFTSDKDRFLVLGSCCSLCSRLVCVGPECSLFYSKRFCLPC 89
P + ++L+ CCSLC + +C+ F ++ CLPC
Sbjct: 23 PTACREKQYLINSQCCSLCQPGQKLVSDCTEF-TETECLPC 62
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 26.9 bits (58), Expect = 3.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1 MASHVECRPLGVFECELC 18
+ SH C P G+++C LC
Sbjct: 836 LLSHRPCHPPGIYQCSLC 853
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 63 CCSLCSRLV--CVGPECSLFYSKRFCLPCVRENI 94
CC+LC + +C S +FC PC R++I
Sbjct: 489 CCTLCHERLEDTHFVQCPSVPSHKFCFPCSRQSI 522
>gi|116292172 lipid storage droplet protein 5 [Homo sapiens]
Length = 463
Score = 26.9 bits (58), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 48 DPFTSDKDRFLVLGSCCSLCSRLVC 72
D +++ KDR +LGS C L VC
Sbjct: 41 DVYSAAKDRHPLLGSACRLAENCVC 65
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 63 CCSLCSRLV--CVGPECSLFYSKRFCLPCVRENI 94
CC+LC + +C S +FC PC R++I
Sbjct: 505 CCTLCHERLEDTHFVQCPSVPSHKFCFPCSRQSI 538
>gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
[Homo sapiens]
Length = 411
Score = 26.6 bits (57), Expect = 5.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 42 ESYVMKDPFTSDKDRFLVLGSCCSLCSRLVCVGP 75
E+Y+ P DR G+ LCSR VC P
Sbjct: 136 ENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPP 169
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 26.6 bits (57), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 63 CCSLCSRLV--CVGPECSLFYSKRFCLPCVRENINA 96
CC+LC + +C +FC PC RE I A
Sbjct: 502 CCTLCRERLEDTHFVQCPSVPGHKFCFPCSREFIKA 537
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 25.8 bits (55), Expect = 8.7
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 ECRPLGVFECELCTLTAPYSYVGQKPPN----TQSMVLLEESYVMKDPFTSDKDRFLVLG 61
EC L V E E C SY+ Q+ N Q+ + LE Y T+D F
Sbjct: 6783 ECSCLEVSESEECVFLEANSYLSQESENILFELQTGIPLENVY----KITTDLKSFYSED 6838
Query: 62 S---CCSLCSR--LVCVGPECSLFYSKRF 85
S C C + L+ P C S+++
Sbjct: 6839 SGSHCTRECRKETLIITPPSCKSHKSRKY 6867
>gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens]
Length = 503
Score = 25.8 bits (55), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 68 SRLVCVGPECSLFYSKRFCLPCV-RENINAFPQEIRQDLEKRKAPSK 113
S L C G C + +++ CL C+ R N++ + LE P K
Sbjct: 398 SVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEK 444
>gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]
Length = 577
Score = 25.8 bits (55), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 68 SRLVCVGPECSLFYSKRFCLPCV-RENINAFPQEIRQDLEKRKAPSK 113
S L C G C + +++ CL C+ R N++ + LE P K
Sbjct: 472 SVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEK 518
>gi|4507483 thrombomodulin precursor [Homo sapiens]
Length = 575
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 32 PNTQSMVLLEESYVMKDPF-TSDKDRFLVLGSCCSLCSRL------VCVGPECSL 79
PNTQ+ E Y++ D F +D D G C +C L +C GP+ +L
Sbjct: 419 PNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECIC-GPDSAL 472
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 25.8 bits (55), Expect = 8.7
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 ECRPLGVFECELCTLTAPYSYVGQKPPN----TQSMVLLEESYVMKDPFTSDKDRFLVLG 61
EC L V E E C SY+ Q+ N Q+ + LE Y T+D F
Sbjct: 6631 ECSCLEVSESEECVFLEANSYLSQESENILFELQTGIPLENVY----KITTDLKSFYSED 6686
Query: 62 S---CCSLCSR--LVCVGPECSLFYSKRF 85
S C C + L+ P C S+++
Sbjct: 6687 SGSHCTRECRKETLIITPPSCKSHKSRKY 6715
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 25.8 bits (55), Expect = 8.7
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 ECRPLGVFECELCTLTAPYSYVGQKPPN----TQSMVLLEESYVMKDPFTSDKDRFLVLG 61
EC L V E E C SY+ Q+ N Q+ + LE Y T+D F
Sbjct: 6631 ECSCLEVSESEECVFLEANSYLSQESENILFELQTGIPLENVY----KITTDLKSFYSED 6686
Query: 62 S---CCSLCSR--LVCVGPECSLFYSKRF 85
S C C + L+ P C S+++
Sbjct: 6687 SGSHCTRECRKETLIITPPSCKSHKSRKY 6715
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 25.8 bits (55), Expect = 8.7
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 ECRPLGVFECELCTLTAPYSYVGQKPPN----TQSMVLLEESYVMKDPFTSDKDRFLVLG 61
EC L V E E C SY+ Q+ N Q+ + LE Y T+D F
Sbjct: 6631 ECSCLEVSESEECVFLEANSYLSQESENILFELQTGIPLENVY----KITTDLKSFYSED 6686
Query: 62 S---CCSLCSR--LVCVGPECSLFYSKRF 85
S C C + L+ P C S+++
Sbjct: 6687 SGSHCTRECRKETLIITPPSCKSHKSRKY 6715
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,868,565
Number of Sequences: 37866
Number of extensions: 252345
Number of successful extensions: 603
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 20
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.