Guide to the Human Genome
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Name: C22orf40 Sequence: fasta or formatted (123aa) NCBI GI: 49533621
Description:

hypothetical protein LOC150383

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          4           1
 C cysteine            8.1         10           2
 D aspartate           3.3          4           1
 E glutamate           7.3          9           2
 F phenylalanine       4.9          6           1
 G glycine             4.1          5           1
 H histidine           0.8          1           1
 I isoleucine          1.6          2           1
 K lysine              5.7          7           1
 L leucine             9.8         12           2
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             8.9         11           2
 Q glutamine           4.1          5           1
 R arginine            7.3          9           1
 S serine             10.6         13           1
 T threonine           4.9          6           1
 V valine              7.3          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC150383 
CPVL                  0.021   serine carboxypeptidase vitellogenic-like 
CPVL                  0.021   serine carboxypeptidase vitellogenic-like 
C14orf4               0.017   chromosome 14 open reading frame 4 
CD40                  0.013   CD40 antigen isoform 1 precursor 
CD40                  0.013   CD40 antigen isoform 2 precursor 
ZNF646                0.008   zinc finger protein 646 
IRF2BP2               0.008   interferon regulatory factor 2 binding protein 2 is...
LSDP5                 0.008   lipid storage droplet protein 5 
IRF2BP2               0.008   interferon regulatory factor 2 binding protein 2 is...
CHST1                 0.008   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
IRF2BP1               0.008   interferon regulatory factor 2 binding protein 1 [Ho...
LOC643677             0.004   hypothetical protein LOC643677 
MSL2                  0.004   ring finger protein 184 isoform 2 
MSL2                  0.004   ring finger protein 184 isoform 1 
THBD                  0.004   thrombomodulin precursor 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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