Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ABLIM2 Sequence: fasta or formatted (470aa) NCBI GI: 194272207
Description:

actin binding LIM protein family, member 2 isoform 7

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [521aa] actin binding LIM protein family, member 2 isoform 6
alt prot [645aa] actin binding LIM protein family, member 2 isoform 1
alt prot [611aa] actin binding LIM protein family, member 2 isoform 2
alt prot [572aa] actin binding LIM protein family, member 2 isoform 3
alt prot [559aa] actin binding LIM protein family, member 2 isoform 4
alt prot [531aa] actin binding LIM protein family, member 2 isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         30           2
 C cysteine            6.2         29           1
 D aspartate           6.6         31           2
 E glutamate           5.1         24           2
 F phenylalanine       3.2         15           2
 G glycine             8.3         39           2
 H histidine           2.8         13           1
 I isoleucine          3.6         17           2
 K lysine              5.3         25           1
 L leucine             7.0         33           2
 M methionine          1.5          7           1
 N asparagine          1.7          8           1
 P proline             5.5         26           2
 Q glutamine           4.5         21           1
 R arginine            6.4         30           2
 S serine             12.1         57           2
 T threonine           4.7         22           1
 V valine              4.0         19           2
 W tryptophan          0.9          4           1
 Y tyrosine            4.3         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin binding LIM protein family, member 2 isoform ... 
ABLIM2                0.981   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.956   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.951   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.925   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.924   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.835   actin binding LIM protein family, member 2 isoform ...
ABLIM1                0.540   actin-binding LIM protein 1 isoform b 
ABLIM1                0.540   actin-binding LIM protein 1 isoform a 
ABLIM1                0.525   actin-binding LIM protein 1 isoform c 
ABLIM3                0.463   actin binding LIM protein family, member 3 
ABLIM1                0.144   actin-binding LIM protein 1 isoform s 
PXN                   0.118   paxillin isoform 3 
PXN                   0.118   paxillin isoform 2 
PXN                   0.118   paxillin isoform 1 
LPXN                  0.093   leupaxin isoform 1 
LPXN                  0.093   leupaxin isoform 2 
LIMS2                 0.089   LIM and senescent cell antigen-like domains 2 isofor...
LIMS2                 0.088   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.088   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.088   LIM and senescent cell antigen-like domains 2 isofo...
LIMS1                 0.087   LIM and senescent cell antigen-like domains 1 
TGFB1I1               0.086   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.086   transforming growth factor beta 1 induced transcript...
LIMK1                 0.077   LIM domain kinase 1 
FHL3                  0.075   four and a half LIM domains 3 
PDLIM5                0.070   PDZ and LIM domain 5 isoform b 
PDLIM5                0.070   PDZ and LIM domain 5 isoform a 
LDB3                  0.070   LIM domain binding 3 isoform 2 
LDB3                  0.070   LIM domain binding 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press