Guide to the Human Genome
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Name: FHL5 Sequence: fasta or formatted (284aa) NCBI GI: 30410801
Description:

activator of cAMP-responsive element modulator (CREM) in testis

Referenced in:

LIM Domain Proteins
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          8           2
 C cysteine           13.0         37           1
 D aspartate           5.3         15           2
 E glutamate           6.7         19           2
 F phenylalanine       6.7         19           1
 G glycine             5.6         16           2
 H histidine           3.5         10           1
 I isoleucine          3.5         10           1
 K lysine             10.2         29           2
 L leucine             5.3         15           2
 M methionine          2.1          6           1
 N asparagine          3.9         11           1
 P proline             3.2          9           1
 Q glutamine           2.8          8           1
 R arginine            2.8          8           1
 S serine              7.7         22           2
 T threonine           4.9         14           2
 V valine              3.5         10           1
 W tryptophan          1.4          4           1
 Y tyrosine            4.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activator of cAMP-responsive element modulator (CREM... 
FHL2                  0.615   four and a half LIM domains 2 
FHL2                  0.615   four and a half LIM domains 2 
FHL2                  0.615   four and a half LIM domains 2 
FHL2                  0.615   four and a half LIM domains 2 
FHL3                  0.502   four and a half LIM domains 3 
FHL1                  0.427   four and a half LIM domains 1 isoform 2 
FHL1                  0.427   four and a half LIM domains 1 isoform 2 
FHL1                  0.427   four and a half LIM domains 1 isoform 3 
FHL1                  0.427   four and a half LIM domains 1 isoform 5 
FHL1                  0.427   four and a half LIM domains 1 isoform 2 
FHL1                  0.366   four and a half LIM domains 1 isoform 1 
FHL1                  0.250   four and a half LIM domains 1 isoform 4 
LPXN                  0.155   leupaxin isoform 1 
LPXN                  0.155   leupaxin isoform 2 
PXN                   0.153   paxillin isoform 3 
PXN                   0.153   paxillin isoform 2 
PXN                   0.153   paxillin isoform 1 
TGFB1I1               0.140   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.140   transforming growth factor beta 1 induced transcript...
LIMS1                 0.134   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.132   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.132   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.132   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.132   LIM and senescent cell antigen-like domains 2 isofor...
LDB3                  0.131   LIM domain binding 3 isoform 2 
LDB3                  0.131   LIM domain binding 3 isoform 1 
PDLIM5                0.123   PDZ and LIM domain 5 isoform b 
PDLIM5                0.123   PDZ and LIM domain 5 isoform a 
ABLIM1                0.121   actin-binding LIM protein 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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