Guide to the Human Genome
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Name: ABLIM3 Sequence: fasta or formatted (683aa) NCBI GI: 7662330
Description:

actin binding LIM protein family, member 3

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         31           2
 C cysteine            4.4         30           1
 D aspartate           4.7         32           2
 E glutamate           5.9         40           2
 F phenylalanine       3.1         21           3
 G glycine             6.4         44           2
 H histidine           4.0         27           2
 I isoleucine          4.8         33           1
 K lysine              5.7         39           2
 L leucine             6.1         42           3
 M methionine          1.9         13           1
 N asparagine          2.6         18           2
 P proline             6.3         43           2
 Q glutamine           4.1         28           2
 R arginine            7.6         52           2
 S serine             11.9         81           3
 T threonine           5.1         35           2
 V valine              3.7         25           2
 W tryptophan          0.9          6           1
 Y tyrosine            6.3         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin binding LIM protein family, member 3 
ABLIM1                0.502   actin-binding LIM protein 1 isoform b 
ABLIM1                0.502   actin-binding LIM protein 1 isoform a 
ABLIM1                0.493   actin-binding LIM protein 1 isoform c 
ABLIM2                0.418   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.407   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.399   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.317   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.315   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.312   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.310   actin binding LIM protein family, member 2 isoform ...
ABLIM1                0.211   actin-binding LIM protein 1 isoform s 
EPB49                 0.122   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.122   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.118   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.118   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.118   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.114   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
PXN                   0.066   paxillin isoform 3 
PXN                   0.066   paxillin isoform 2 
PXN                   0.066   paxillin isoform 1 
LPXN                  0.066   leupaxin isoform 1 
LPXN                  0.066   leupaxin isoform 2 
TGFB1I1               0.064   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.064   transforming growth factor beta 1 induced transcript...
PDLIM7                0.061   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.061   PDZ and LIM domain 7 isoform 1 
LIMS1                 0.059   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.057   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.057   LIM and senescent cell antigen-like domains 2 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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