Guide to the Human Genome
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Name: ITGB3 Sequence: fasta or formatted (788aa) NCBI GI: 47078292
Description:

integrin beta chain, beta 3 precursor

Referenced in:

Coagulation
Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         40           2
 C cysteine            7.1         56           1
 D aspartate           6.9         54           2
 E glutamate           6.6         52           3
 F phenylalanine       2.9         23           1
 G glycine             7.4         58           2
 H histidine           1.3         10           1
 I isoleucine          4.2         33           1
 K lysine              5.7         45           2
 L leucine             8.2         65           2
 M methionine          2.0         16           1
 N asparagine          4.3         34           2
 P proline             4.9         39           2
 Q glutamine           3.8         30           2
 R arginine            4.8         38           1
 S serine              8.0         63           2
 T threonine           5.8         46           2
 V valine              6.6         52           2
 W tryptophan          1.0          8           1
 Y tyrosine            3.3         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin beta chain, beta 3 precursor 
ITGB5                 0.539   integrin, beta 5 
ITGB6                 0.497   integrin, beta 6 
ITGB1                 0.414   integrin beta 1 isoform 1A precursor 
ITGB1                 0.414   integrin beta 1 isoform 1A precursor 
ITGB1                 0.412   integrin beta 1 isoform 1D precursor 
ITGB1                 0.403   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.403   integrin beta 1 isoform 1B precursor 
ITGB1                 0.403   integrin beta 1 isoform 1C-2 precursor 
ITGB2                 0.338   integrin, beta 2 precursor 
ITGB2                 0.338   integrin, beta 2 precursor 
ITGB7                 0.333   integrin, beta 7 
ITGB8                 0.293   integrin, beta 8 precursor 
ITGB4                 0.261   integrin beta 4 isoform 2 precursor 
ITGB4                 0.261   integrin beta 4 isoform 1 precursor 
ITGB4                 0.261   integrin beta 4 isoform 3 precursor 
ITGBL1                0.077   integrin, beta-like 1 (with EGF-like repeat domains) ...
TNR                   0.038   tenascin R 
TNXB                  0.036   tenascin XB isoform 1 precursor 
TNC                   0.036   tenascin C precursor 
ODZ4                  0.034   odz, odd Oz/ten-m homolog 4 
SCARF2                0.032   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.032   scavenger receptor class F, member 2 isoform 2 [Homo...
ODZ2                  0.031   odz, odd Oz/ten-m homolog 2 
PEAR1                 0.029   platelet endothelial aggregation receptor 1 
ODZ1                  0.029   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.029   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.029   odz, odd Oz/ten-m homolog 1 isoform 1 
ODZ3                  0.028   odz, odd Oz/ten-m homolog 3 
SCARF1                0.028   scavenger receptor class F, member 1 isoform 3 precu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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