ITGB1 11480

Name: ITGB1	Sequence: fasta or formatted (789aa)		NCBI GI: 19743815
Description: integrin beta 1 isoform 1B precursor		Referenced in: Integrins Extracellular Matrix
Other entries for this name: alt prot [798aa] integrin beta 1 isoform 1A precursor alt prot [825aa] integrin beta 1 isoform 1C-1 precursor alt prot [801aa] integrin beta 1 isoform 1D precursor alt prot [819aa] integrin beta 1 isoform 1C-2 precursor alt prot [798aa] integrin beta 1 isoform 1A precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.7 29 1 C cysteine 7.4 58 2 D aspartate 5.3 42 2 E glutamate 7.7 61 2 F phenylalanine 3.7 29 1 G glycine 7.7 61 2 H histidine 1.3 10 1 I isoleucine 6.0 47 2 K lysine 7.2 57 3 L leucine 6.5 51 3 M methionine 1.9 15 1 N asparagine 7.1 56 2 P proline 4.2 33 2 Q glutamine 3.8 30 2 R arginine 3.7 29 2 S serine 7.7 61 2 T threonine 5.4 43 2 V valine 6.2 49 2 W tryptophan 0.8 6 1 Y tyrosine 2.8 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 integrin beta 1 isoform 1B precursor ITGB1 0.987 integrin beta 1 isoform 1C-1 precursor ITGB1 0.987 integrin beta 1 isoform 1A precursor ITGB1 0.987 integrin beta 1 isoform 1A precursor ITGB1 0.987 integrin beta 1 isoform 1C-2 precursor ITGB1 0.987 integrin beta 1 isoform 1D precursor ITGB2 0.417 integrin, beta 2 precursor ITGB2 0.417 integrin, beta 2 precursor ITGB3 0.401 integrin beta chain, beta 3 precursor ITGB7 0.398 integrin, beta 7 ITGB6 0.382 integrin, beta 6 ITGB5 0.376 integrin, beta 5 ITGB8 0.274 integrin, beta 8 precursor ITGB4 0.258 integrin beta 4 isoform 2 precursor ITGB4 0.258 integrin beta 4 isoform 1 precursor ITGB4 0.258 integrin beta 4 isoform 3 precursor ITGBL1 0.062 integrin, beta-like 1 (with EGF-like repeat domains) ... TNR 0.032 tenascin R TNXB 0.031 tenascin XB isoform 1 precursor ODZ3 0.030 odz, odd Oz/ten-m homolog 3 ODZ4 0.029 odz, odd Oz/ten-m homolog 4 NOTCH1 0.029 notch1 preproprotein ODZ2 0.029 odz, odd Oz/ten-m homolog 2 TNC 0.027 tenascin C precursor TNN 0.027 tenascin N NOTCH2 0.026 notch 2 preproprotein ODZ1 0.026 odz, odd Oz/ten-m homolog 1 isoform 3 ODZ1 0.026 odz, odd Oz/ten-m homolog 1 isoform 2 ODZ1 0.026 odz, odd Oz/ten-m homolog 1 isoform 1 LAMA1 0.021 laminin, alpha 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.