Guide to the Human Genome
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Name: GFRA2 Sequence: fasta or formatted (464aa) NCBI GI: 47078235
Description:

GDNF family receptor alpha 2 preproprotein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         34           2
 C cysteine            6.7         31           1
 D aspartate           4.7         22           2
 E glutamate           6.0         28           3
 F phenylalanine       3.7         17           3
 G glycine             4.7         22           1
 H histidine           1.3          6           1
 I isoleucine          3.4         16           2
 K lysine              4.3         20           2
 L leucine             9.7         45           1
 M methionine          1.9          9           1
 N asparagine          5.4         25           2
 P proline             5.6         26           2
 Q glutamine           3.7         17           1
 R arginine            7.3         34           3
 S serine             10.3         48           2
 T threonine           5.8         27           2
 V valine              4.5         21           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDNF family receptor alpha 2 preproprotein 
GFRA1                 0.420   GDNF family receptor alpha 1 isoform a preproprotein ...
GFRA1                 0.416   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.416   GDNF family receptor alpha 1 isoform b preproprotein...
LOC100133881          0.298   PREDICTED: similar to GDNF family receptor alpha 2 ...
LOC100132336          0.243   PREDICTED: similar to GDNF family receptor alpha 2 ...
GFRA3                 0.192   GDNF family receptor alpha 3 preproprotein 
GFRA4                 0.163   GDNF family receptor alpha 4 isoform a precursor [Ho...
GFRA4                 0.118   GDNF family receptor alpha 4 isoform b precursor [Ho...
GFRAL                 0.048   GDNF family receptor alpha like 
SVEP1                 0.012   polydom 
MASP2                 0.009   mannan-binding lectin serine protease 2 isoform 1 pr...
MASP2                 0.009   mannan-binding lectin serine protease 2 isoform 2 pr...
LOC729815             0.009   PREDICTED: hypothetical protein 
CCBE1                 0.009   collagen and calcium binding EGF domains 1 
SUSD1                 0.007   sushi domain containing 1 
ZFYVE16               0.006   zinc finger, FYVE domain containing 16 
ZFYVE16               0.006   zinc finger, FYVE domain containing 16 
SCUBE1                0.006   signal peptide, CUB domain, EGF-like 1 
CNTNAP4               0.006   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.006   cell recognition protein CASPR4 isoform 1 
WISP3                 0.005   WNT1 inducible signaling pathway protein 3 isoform 3...
WISP3                 0.005   WNT1 inducible signaling pathway protein 3 isoform 1 ...
LOC390213             0.005   PREDICTED: similar to hCG21066 
LOC390213             0.005   PREDICTED: similar to hCG21066 
LOC390213             0.005   PREDICTED: hypothetical protein LOC390213 
RAG1                  0.005   recombination activating gene 1 
MUC16                 0.005   mucin 16 
RECK                  0.005   RECK protein precursor 
LOC729815             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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