Guide to the Human Genome
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Name: GFRA3 Sequence: fasta or formatted (400aa) NCBI GI: 22035694
Description:

GDNF family receptor alpha 3 preproprotein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         31           2
 C cysteine            7.2         29           1
 D aspartate           4.0         16           1
 E glutamate           4.5         18           2
 F phenylalanine       3.0         12           2
 G glycine             3.5         14           1
 H histidine           3.2         13           2
 I isoleucine          2.0          8           1
 K lysine              2.8         11           1
 L leucine            14.2         57           5
 M methionine          3.2         13           1
 N asparagine          4.8         19           1
 P proline             9.5         38           2
 Q glutamine           3.8         15           2
 R arginine            6.8         27           3
 S serine              7.8         31           2
 T threonine           5.0         20           1
 V valine              4.2         17           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDNF family receptor alpha 3 preproprotein 
GFRA2                 0.217   GDNF family receptor alpha 2 preproprotein 
GFRA1                 0.203   GDNF family receptor alpha 1 isoform a preproprotein ...
GFRA1                 0.202   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.202   GDNF family receptor alpha 1 isoform b preproprotein...
GFRA4                 0.153   GDNF family receptor alpha 4 isoform a precursor [Ho...
GFRA4                 0.097   GDNF family receptor alpha 4 isoform b precursor [Ho...
GFRAL                 0.051   GDNF family receptor alpha like 
LOC100133881          0.047   PREDICTED: similar to GDNF family receptor alpha 2 ...
LOC100132336          0.038   PREDICTED: similar to GDNF family receptor alpha 2 ...
AGRN                  0.016   agrin 
LOC729602             0.010   PREDICTED: NPIP-like protein ENSP00000283050 isofor...
FANCG                 0.010   Fanconi anemia, complementation group G 
ACVR1B                0.010   activin A receptor, type IB isoform c precursor [Hom...
ACVR1B                0.010   activin A receptor, type IB isoform b precursor [Hom...
ACVR1B                0.010   activin A receptor, type IB isoform a precursor [Homo...
MICAL3                0.010   microtubule associated monoxygenase, calponin and L...
LOC100289169          0.010   PREDICTED: hypothetical protein XP_002343477 
LOC728741             0.010   PREDICTED: hypothetical protein 
LOC728734             0.010   PREDICTED: similar to NPIP-like protein ENSP0000028...
NPIPL1                0.010   PREDICTED: nuclear pore complex interacting protein...
KRTAP10-5             0.010   keratin associated protein 10-5 
PLCB3                 0.009   phospholipase C beta 3 
RYK                   0.009   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.009   RYK receptor-like tyrosine kinase isoform 1 
PTPRN2                0.009   protein tyrosine phosphatase, receptor type, N poly...
PTPRN2                0.009   protein tyrosine phosphatase, receptor type, N poly...
SF1                   0.007   splicing factor 1 isoform 3 
C2orf24               0.007   hypothetical protein LOC27013 
C10orf95              0.007   hypothetical protein LOC79946 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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