Guide to the Human Genome
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Name: LOC729815 Sequence: fasta or formatted (375aa) NCBI GI: 239744133
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {375aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          4           2
 C cysteine           14.9         56           1
 D aspartate           0.0          0           0
 E glutamate           0.5          2           1
 F phenylalanine       0.8          3           1
 G glycine             4.3         16           1
 H histidine           0.3          1           1
 I isoleucine          0.5          2           1
 K lysine              0.5          2           1
 L leucine             0.0          0           0
 M methionine          0.3          1           1
 N asparagine          0.8          3           1
 P proline             0.0          0           0
 Q glutamine           8.3         31           1
 R arginine            4.8         18           1
 S serine             44.5        167           4
 T threonine          16.5         62           1
 V valine              0.0          0           0
 W tryptophan          1.3          5           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729815             0.989   PREDICTED: hypothetical protein 
MUC21                 0.177   mucin 21 
DSPP                  0.148   dentin sialophosphoprotein preproprotein 
LOC100133915          0.106   PREDICTED: hypothetical protein 
LOC729792             0.103   PREDICTED: hypothetical protein 
LOC729792             0.103   PREDICTED: hypothetical protein 
LOC729792             0.103   PREDICTED: hypothetical protein 
LOC100294501          0.103   PREDICTED: hypothetical protein 
LOC100294238          0.103   PREDICTED: hypothetical protein 
LOC100294204          0.103   PREDICTED: hypothetical protein 
LOC100294136          0.103   PREDICTED: hypothetical protein 
LOC100294091          0.103   PREDICTED: hypothetical protein 
LOC730401             0.103   PREDICTED: hypothetical protein 
LOC100294249          0.103   PREDICTED: hypothetical protein XP_002344067 
KRTAP10-4             0.090   keratin associated protein 10-4 
KRTAP10-6             0.086   keratin associated protein 10-6 
MUC3A                 0.081   PREDICTED: mucin 3A, cell surface associated, parti...
KRTAP10-7             0.077   keratin associated protein 10-7 
KRTAP5-4              0.074   keratin associated protein 5-4 
KRTAP5-3              0.073   keratin associated protein 5-3 
TRIOBP                0.073   TRIO and F-actin binding protein isoform 6 
PEAR1                 0.071   platelet endothelial aggregation receptor 1 
NOTCH1                0.071   notch1 preproprotein 
LOC100133790          0.070   PREDICTED: intestinal mucin-like, partial 
KRTAP10-11            0.070   keratin associated protein 10-11 
KRTAP5-1              0.070   keratin associated protein 5-1 
CDKN2AIP              0.069   CDKN2A interacting protein 
TNRC18                0.067   trinucleotide repeat containing 18 
NOTCH2                0.067   notch 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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