Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 46409504
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46409504 hypothetical protein LOC400165 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46409504 hypothetical protein LOC400165 [Homo sapiens] 253 3e-68
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 31 0.19
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 31 0.19
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 29 0.74
gi|24307929 Opa interacting protein 5 [Homo sapiens] 28 1.3
gi|239755952 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|57165366 G4 protein [Homo sapiens] 28 2.2
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 28 2.2
gi|194272140 dendrin [Homo sapiens] 27 2.8
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 27 3.7
gi|211971095 zygote arrest 1-like [Homo sapiens] 27 4.8
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ... 27 4.8
gi|239749816 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo ... 27 4.8
gi|112420968 coiled-coil domain containing 158 [Homo sapiens] 27 4.8
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 27 4.8
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens] 27 4.8
gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens] 27 4.8
gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens] 27 4.8
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 26 6.3
gi|239745797 PREDICTED: hypothetical protein XP_002343592 [Homo ... 26 8.2
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 26 8.2
>gi|46409504 hypothetical protein LOC400165 [Homo sapiens]
Length = 121
Score = 253 bits (645), Expect = 3e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MNSPEARLCVAQCRDSYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAAS 60
MNSPEARLCVAQCRDSYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAAS
Sbjct: 1 MNSPEARLCVAQCRDSYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAAS 60
Query: 61 WDQPQGCLTYKGRRSASGTQKQLQLPDTLSSLLCWRGAIMVYIKVTVQTDDSNKLLSLLY 120
WDQPQGCLTYKGRRSASGTQKQLQLPDTLSSLLCWRGAIMVYIKVTVQTDDSNKLLSLLY
Sbjct: 61 WDQPQGCLTYKGRRSASGTQKQLQLPDTLSSLLCWRGAIMVYIKVTVQTDDSNKLLSLLY 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 18 PGCQPLKDTRAWASSLKMDPAGLEGGPRD---ESRDEPPIRAQAASWDQPQGCLTYKGRR 74
P P ++SS +P G G PR + D P R+++A P L+ KGR
Sbjct: 59 PQAGPPSRPPRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTLHPYSPLSPKGRP 118
Query: 75 SASGTQKQLQLPDTLSSL 92
S+ T LQ PD SL
Sbjct: 119 SSPRTPLYLQ-PDAYGSL 135
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 18 PGCQPLKDTRAWASSLKMDPAGLEGGPRD---ESRDEPPIRAQAASWDQPQGCLTYKGRR 74
P P ++SS +P G G PR + D P R+++A P L+ KGR
Sbjct: 59 PQAGPPSRPPRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTLHPYSPLSPKGRP 118
Query: 75 SASGTQKQLQLPDTLSSL 92
S+ T LQ PD SL
Sbjct: 119 SSPRTPLYLQ-PDAYGSL 135
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 29.3 bits (64), Expect = 0.74
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 39 GLEGGPRDESRDEPPIRA----QAASWDQPQGCLTYKGRRSASGTQKQLQLPDTLSSLLC 94
GLEGGPRD PP R+ Q AS D P G + + LP+ L L
Sbjct: 77 GLEGGPRDPGPSAPPPRSGPRGQLASPDAP-----------GPGPRSEAPLPE-LDPLFS 124
Query: 95 W 95
W
Sbjct: 125 W 125
>gi|24307929 Opa interacting protein 5 [Homo sapiens]
Length = 229
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 19 GCQPLKDTRAWASSLKMDPAGLEG----GPRDESRDEPPIRAQAASWDQPQGCLTYK 71
G + D ++ +S++ D ++G GP +EP Q SW QP+ C ++
Sbjct: 23 GTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEPAAGPQLPSWLQPERCAVFQ 79
>gi|239755952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 233
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 15 DSYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAAS 60
D P PL+ T W DP LE G ++ + D PP+ A+ +S
Sbjct: 65 DREPASVPLQTT--W------DPYSLETGAKENAEDGPPVDARTSS 102
>gi|57165366 G4 protein [Homo sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 40 LEGGPRDESRDEPPI------RAQAASWDQPQGCLTYKGRRSASGTQKQLQ 84
+ G + S++EP + R + WDQP GR A G +L+
Sbjct: 66 VSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLR 116
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 27.7 bits (60), Expect = 2.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 18 PGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAAS 60
PG L RAW + +DP G+ GGP+D RD P + + + S
Sbjct: 739 PGSFCLCLNRAWNHAETLDPPGM-GGPQD-GRDAPVLLSASPS 779
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 18 PGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSAS 77
PG R WAS + + GP E R + +AAS ++ + T + RR A
Sbjct: 75 PGSPQPPPRRPWASRVLQEATNWRAGPLAEVRAREQEKRKAASQER-EAKETERKRRKAG 133
Query: 78 GTQK 81
G ++
Sbjct: 134 GARR 137
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 26.9 bits (58), Expect = 3.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 19 GCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSASG 78
G +P K + A +D AG EG R+E+ EP +A A +G S
Sbjct: 336 GSEPAKASEKEAPEDTVD-AGEEGSRREEAAKEPKKKASALE----EGSSDASQELEISE 390
Query: 79 TQKQLQLPDTLSS 91
K+ QL D+++S
Sbjct: 391 HMKEPQLSDSIAS 403
>gi|211971095 zygote arrest 1-like [Homo sapiens]
Length = 321
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 43 GPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSASGTQ--KQLQLPDTLSS 91
GP + S+ +PP R A + G L G + A Q K Q+P +S
Sbjct: 159 GPAEASQPQPPSRRSGADRQEEPGQLEESGEKDAPCPQETKSKQVPGDAAS 209
>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
sapiens]
Length = 152
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 16 SYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASW 61
S P P D A ASSL+ + +G G D R + R SW
Sbjct: 77 SQPPPPPPLDPPASASSLRSNSSGSSGDDDDRKRAKAGARGSWGSW 122
>gi|239749816 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 16 SYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASW 61
S P P D A ASSL+ + +G G D R + R SW
Sbjct: 77 SQPPPPPPLDPPASASSLRSNSSGSSGDDDDRKRAKAGARGSWGSW 122
>gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo
sapiens]
Length = 152
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 16 SYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASW 61
S P P D A ASSL+ + +G G D R + R SW
Sbjct: 77 SQPPPPPPLDPPASASSLRSNSSGSSGDDDDRKRAKAGARGSWGSW 122
>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
Length = 1113
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 41 EGGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSAS 77
EG E+ P+ A + P GC T+ S S
Sbjct: 967 EGSKSSETLSREPVTLHAGDREDPSGCFTFTSAASPS 1003
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 42 GGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSASG 78
GGP++ SRD+ P+ QP G + G + A+G
Sbjct: 168 GGPQESSRDKRPLSGPDVGTPQPAGLAS--GAKLAAG 202
>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 42 GGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSASG 78
GGP++ SRD+ P+ QP G + G + A+G
Sbjct: 168 GGPQESSRDKRPLSGPDVGTPQPAGLAS--GAKLAAG 202
>gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 42 GGPRDESRDEPPIRAQAASWDQPQGCLTYKGRRSASG 78
GGP++ SRD+ P+ QP G + G + A+G
Sbjct: 168 GGPQESSRDKRPLSGPDVGTPQPAGLAS--GAKLAAG 202
>gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens]
Length = 513
Score = 26.6 bits (57), Expect = 4.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 72 GRRSASGTQKQLQLPDTLSSLLCWRGAIMVYIKVTVQTDDSNK 114
G R +SG + L L + + LC G ++++KVT +++ +
Sbjct: 18 GCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR 60
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 26.2 bits (56), Expect = 6.3
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 14 RDSYPGCQPLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASWDQPQG 66
RDS+ P + A AS + PAG G ++ P AQA+ P G
Sbjct: 3 RDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASP---AQASPAGTPPG 52
>gi|239745797 PREDICTED: hypothetical protein XP_002343592 [Homo
sapiens]
Length = 159
Score = 25.8 bits (55), Expect = 8.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 10 VAQCRDSYPGCQ---PLKDTRAWASSLKMDPAGLEGGPRDESRDEPPIRAQAASWDQPQG 66
+ Q R + GC+ P + R W K P L + P A A+W PQ
Sbjct: 86 LTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVC----PCSAAGATWSPPQR 141
Query: 67 CL 68
CL
Sbjct: 142 CL 143
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 25.8 bits (55), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 37 PAGLEGGPRDESRDEPP 53
P G +GGPR E D PP
Sbjct: 172 PRGRDGGPRREEDDVPP 188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,343,622
Number of Sequences: 37866
Number of extensions: 242820
Number of successful extensions: 651
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 22
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.