Guide to the Human Genome
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Name: C13orf35 Sequence: fasta or formatted (121aa) NCBI GI: 46409504
Description:

hypothetical protein LOC400165

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         10           2
 C cysteine            4.1          5           1
 D aspartate           7.4          9           2
 E glutamate           3.3          4           1
 F phenylalanine       0.0          0           0
 G glycine             6.6          8           2
 H histidine           0.0          0           0
 I isoleucine          2.5          3           1
 K lysine              5.0          6           1
 L leucine            11.6         14           2
 M methionine          2.5          3           1
 N asparagine          1.7          2           1
 P proline             7.4          9           2
 Q glutamine           7.4          9           1
 R arginine            8.3         10           2
 S serine              9.9         12           2
 T threonine           5.0          6           1
 V valine              3.3          4           1
 W tryptophan          2.5          3           1
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400165 
PPP1R13L              0.026   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.026   protein phosphatase 1, regulatory subunit 13 like [H...
RAB11FIP3             0.018   rab11-family interacting protein 3 isoform 1 
OIP5                  0.013   Opa interacting protein 5 
FLJ31485              0.013   PREDICTED: hypothetical protein 
C6orf47               0.013   G4 protein 
MGC50722              0.013   hypothetical protein LOC399693 
DDN                   0.009   dendrin 
CEP164                0.009   centrosomal protein 164kDa 
ZAR1L                 0.009   zygote arrest 1-like 
LOC100291632          0.009   PREDICTED: hypothetical protein XP_002344527 
LOC100288471          0.009   PREDICTED: hypothetical protein 
LOC100288471          0.009   PREDICTED: hypothetical protein XP_002343034 
CCDC158               0.009   coiled-coil domain containing 158 
PAK4                  0.009   p21-activated kinase 4 isoform 1 
PAK4                  0.009   p21-activated kinase 4 isoform 1 
PAK4                  0.009   p21-activated kinase 4 isoform 1 
ZCCHC4                0.009   zinc finger, CCHC domain containing 4 
TMPRSS13              0.004   transmembrane protease, serine 13 
LOC100287590          0.004   PREDICTED: hypothetical protein XP_002343592 
LOC651856             0.004   PREDICTED: similar to hCG2023245 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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