Guide to the Human Genome
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Name: OIP5 Sequence: fasta or formatted (229aa) NCBI GI: 24307929
Description:

Opa interacting protein 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         23           2
 C cysteine            3.9          9           1
 D aspartate           3.5          8           1
 E glutamate           5.7         13           2
 F phenylalanine       3.5          8           1
 G glycine             7.0         16           2
 H histidine           3.1          7           1
 I isoleucine          3.5          8           1
 K lysine              4.8         11           1
 L leucine            11.4         26           2
 M methionine          2.2          5           1
 N asparagine          3.1          7           2
 P proline             6.1         14           2
 Q glutamine           3.9          9           1
 R arginine            4.4         10           1
 S serine              9.2         21           2
 T threonine           4.8         11           2
 V valine              7.4         17           2
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Opa interacting protein 5 
C21orf45              0.036   chromosome 21 open reading frame 45 
SYNE2                 0.011   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.011   spectrin repeat containing, nuclear envelope 2 isof...
GPR37                 0.011   G protein-coupled receptor 37 
ZXDC                  0.011   ZXD family zinc finger C isoform 2 
ZXDC                  0.011   ZXD family zinc finger C isoform 1 
MARCH9                0.009   membrane-associated RING-CH protein IX 
GBP4                  0.007   guanylate binding protein 4 
C13orf35              0.007   hypothetical protein LOC400165 
ZFHX4                 0.007   zinc finger homeodomain 4 
CHFR                  0.007   checkpoint with forkhead and ring finger domains is...
CHFR                  0.007   checkpoint with forkhead and ring finger domains is...
CHFR                  0.007   checkpoint with forkhead and ring finger domains is...
CHFR                  0.007   checkpoint with forkhead and ring finger domains is...
LOC100292172          0.007   PREDICTED: hypothetical protein 
NCOR2                 0.007   nuclear receptor co-repressor 2 isoform 2 
CHFR                  0.007   checkpoint with forkhead and ring finger domains is...
TUFT1                 0.007   tuftelin 1 isoform 2 
TUFT1                 0.007   tuftelin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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