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Search of human proteins with 4506473
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog
[Homo sapiens]
(619 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 1267 0.0
gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 380 e-105
gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 375 e-104
gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo... 285 1e-76
gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens] 251 1e-66
gi|117320531 nuclear factor of kappa light polypeptide gene enha... 249 5e-66
gi|117320540 nuclear factor of kappa light polypeptide gene enha... 249 5e-66
gi|117320527 nuclear factor of kappa light polypeptide gene enha... 249 5e-66
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 54 6e-07
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 54 6e-07
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 54 6e-07
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 54 6e-07
gi|62243734 signal transducing adaptor family member 2 isoform 1... 53 9e-07
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 52 2e-06
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 49 2e-05
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 47 5e-05
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 45 2e-04
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 45 2e-04
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 44 4e-04
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso... 42 0.002
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa... 42 0.002
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 42 0.002
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 42 0.002
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 40 0.005
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 40 0.005
gi|119964690 glycogenin 2 isoform b [Homo sapiens] 40 0.005
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 40 0.008
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 1267 bits (3279), Expect = 0.0
Identities = 619/619 (100%), Positives = 619/619 (100%)
Query: 1 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK 60
MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
Sbjct: 1 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK 60
Query: 61 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII 120
VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
Sbjct: 61 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII 120
Query: 121 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA 180
TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
Sbjct: 121 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA 180
Query: 181 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV 240
PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
Sbjct: 181 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV 240
Query: 241 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF 300
AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
Sbjct: 241 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF 300
Query: 301 QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYF 360
QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYF
Sbjct: 301 QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYF 360
Query: 361 KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP 420
KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP
Sbjct: 361 KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP 420
Query: 421 RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA 480
RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA
Sbjct: 421 RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA 480
Query: 481 DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS 540
DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS
Sbjct: 481 DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS 540
Query: 541 SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI 600
SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI
Sbjct: 541 SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI 600
Query: 601 GSMQNEQLSDSFPYEFFQV 619
GSMQNEQLSDSFPYEFFQV
Sbjct: 601 GSMQNEQLSDSFPYEFFQV 619
>gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 1 [Homo sapiens]
Length = 551
Score = 380 bits (975), Expect = e-105
Identities = 213/427 (49%), Positives = 275/427 (64%), Gaps = 25/427 (5%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY+EIIEQP+QRGMRFRYKCEGRSAGSIPGE STD +T+P+I+I Y G G VRI+
Sbjct: 16 ASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRIS 75
Query: 65 LVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRIK 124
LVTK+ P++PHPH+LVGKDCRDG+YEAE +R FQNLGI+CVKK+++++AI RI+
Sbjct: 76 LVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQ 135
Query: 125 AGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTA 184
NPF VP ++ D DLN VRLCFQV + D G LPPV+S+PI+DNRAPNTA
Sbjct: 136 TNNNPFQVPIEEQRG--DYDLNAVRLCFQVTVRDPSGR-PLRLPPVLSHPIFDNRAPNTA 192
Query: 185 ELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVF 244
EL+ICRVN+N GS GGDEIFLLCDKVQK+DIEV F WEA+G FSQADVHRQVAIVF
Sbjct: 193 ELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVF 252
Query: 245 KTPPYC-KAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKL 303
+TPPY ++ PV V MQLRRPSD+E+SE M+F+YLPD D + + K+++T F+ +
Sbjct: 253 RTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKRTYETFKSI 312
Query: 304 CQDHVETGFRHVDQDGLELLTSGDPP----TLASQSAGITVNFPERPRPGLLGSIGEGRY 359
+ +G T PP + S+S+ +P P S+ Y
Sbjct: 313 MKKSPFSG-----------PTDPRPPPRRIAVPSRSSASVPKPAPQPYP-FTSSLSTINY 360
Query: 360 FKKEPNLF-----SHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSS 414
+ +F S + + P V QA + P+P +S+ A + L +
Sbjct: 361 DEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQA 420
Query: 415 VAHPTPR 421
VA P P+
Sbjct: 421 VAPPAPK 427
>gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 2 [Homo sapiens]
Length = 548
Score = 375 bits (963), Expect = e-104
Identities = 211/427 (49%), Positives = 273/427 (63%), Gaps = 28/427 (6%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY+EIIEQP+QRGMRFRYKCEGRSAGSIPGE STD +T+P+I+I Y G G VRI+
Sbjct: 16 ASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRIS 75
Query: 65 LVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRIK 124
LVTK+ P++PHPH+LVGKDCRDG+YEAE +R FQNLGI+CVKK+++++AI RI+
Sbjct: 76 LVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQ 135
Query: 125 AGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTA 184
NPF ++ D DLN VRLCFQV + D G LPPV+S+PI+DNRAPNTA
Sbjct: 136 TNNNPFQEEQR-----GDYDLNAVRLCFQVTVRDPSGR-PLRLPPVLSHPIFDNRAPNTA 189
Query: 185 ELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVF 244
EL+ICRVN+N GS GGDEIFLLCDKVQK+DIEV F WEA+G FSQADVHRQVAIVF
Sbjct: 190 ELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVF 249
Query: 245 KTPPYC-KAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKL 303
+TPPY ++ PV V MQLRRPSD+E+SE M+F+YLPD D + + K+++T F+ +
Sbjct: 250 RTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKRTYETFKSI 309
Query: 304 CQDHVETGFRHVDQDGLELLTSGDPP----TLASQSAGITVNFPERPRPGLLGSIGEGRY 359
+ +G T PP + S+S+ +P P S+ Y
Sbjct: 310 MKKSPFSG-----------PTDPRPPPRRIAVPSRSSASVPKPAPQPYP-FTSSLSTINY 357
Query: 360 FKKEPNLF-----SHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSS 414
+ +F S + + P V QA + P+P +S+ A + L +
Sbjct: 358 DEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQA 417
Query: 415 VAHPTPR 421
VA P P+
Sbjct: 418 VAPPAPK 424
>gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo
sapiens]
Length = 579
Score = 285 bits (728), Expect = 1e-76
Identities = 147/292 (50%), Positives = 200/292 (68%), Gaps = 7/292 (2%)
Query: 8 PYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT--L 65
P++ I EQP+QRGMRFRY+CEGRSAGSI GE ST+ ++T P+I++ + G +V +T L
Sbjct: 125 PHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEVTACL 184
Query: 66 VTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLF-FQNLGIRCVKKKEVKEAIITRIK 124
V K+ P++ HPH LVGKDC DG P F NLGI+CV+KKE++ AI +I+
Sbjct: 185 VWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIERKIQ 244
Query: 125 AGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTA 184
GI+P+N L + ++ D+NVVR+CFQ D+ G + + PV+S P+YD ++ NT+
Sbjct: 245 LGIDPYNAGS--LKNHQEVDMNVVRICFQASYRDQQGQMRR-MDPVLSEPVYDKKSTNTS 301
Query: 185 ELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVF 244
ELRICR+NK G GG+E++LLCDKVQK+DI V F WE + FSQADVHRQ+AIVF
Sbjct: 302 ELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQADVHRQIAIVF 361
Query: 245 KTPPY-CKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQK 295
KTPPY I EPVTV + L+R +D SE + F YLP + D+YG K+++
Sbjct: 362 KTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKR 413
>gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens]
Length = 969
Score = 251 bits (641), Expect = 1e-66
Identities = 147/327 (44%), Positives = 188/327 (57%), Gaps = 36/327 (11%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY++I+EQP+QRG RFRY CEG S G +PG S N ++YP ++I NY G KV +
Sbjct: 40 ADGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQ 99
Query: 65 LVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRI- 123
LVT H H LVGK C DG G + + F NLGI V KK+V E + R+
Sbjct: 100 LVTNGKNIHLHAHSLVGKHCEDGICTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMT 159
Query: 124 KAGINPFNV----------------PEKQLNDIE-------------DCDLNVVRLCFQV 154
+A I +N ++QL D E + DL+VVRL F
Sbjct: 160 EACIRGYNPGLLVHPDLAYLQAEGGGDRQLGDREKELIRQAALQQTKEMDLSVVRLMFTA 219
Query: 155 FLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKD 214
FLPD G+ T L PVVS+ IYD++APN + L+I R+++ G V GG+EI+LLCDKVQKD
Sbjct: 220 FLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD 279
Query: 215 DIEVRFVLND-----WEAKGIFSQADVHRQVAIVFKTPPYCKA-ITEPVTVKMQLRRPSD 268
DI++RF + WE G FS DVHRQ AIVFKTP Y IT+P +V +QLRR SD
Sbjct: 280 DIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDINITKPASVFVQLRRKSD 339
Query: 269 QEVSESMDFRYLPDEKDTYGNKAKKQK 295
E SE F Y P+ KD + K+QK
Sbjct: 340 LETSEPKPFLYYPEIKDKEEVQRKRQK 366
>gi|117320531 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform a [Homo sapiens]
Length = 900
Score = 249 bits (636), Expect = 5e-66
Identities = 136/314 (43%), Positives = 188/314 (59%), Gaps = 16/314 (5%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY+ I+EQP+QRG RFRY CEG S G +PG S +TYP+++I NY G K+ +
Sbjct: 35 ADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVD 94
Query: 65 LVTKNDPYKPHPHDLVGKDCRD-GYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRI 123
LVT +DP + H H LVGK C + G G + F NLG+ V KK + +I ++
Sbjct: 95 LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKL 154
Query: 124 ---KAGINPFNVPEKQLNDIED--------CDLNVVRLCFQVFLPDEHGNLTTALPPVVS 172
+ P + E + ++E DL++VRL F FL G+ + L PV+S
Sbjct: 155 QRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVIS 214
Query: 173 NPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLND---WEAKG 229
PI+D+++P + L+I R++K GSVRGGDE++LLCDKVQKDDIEVRF +D W+A G
Sbjct: 215 QPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFG 274
Query: 230 IFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYG 288
FS DVH+Q AIVF+TPPY K I PVTV +QL+R +VS+S F Y P +D
Sbjct: 275 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYPLVEDKEE 334
Query: 289 NKAKKQKTTLLFQK 302
+ K++K F +
Sbjct: 335 VQRKRRKALPTFSQ 348
>gi|117320540 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 249 bits (636), Expect = 5e-66
Identities = 136/314 (43%), Positives = 188/314 (59%), Gaps = 16/314 (5%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY+ I+EQP+QRG RFRY CEG S G +PG S +TYP+++I NY G K+ +
Sbjct: 35 ADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVD 94
Query: 65 LVTKNDPYKPHPHDLVGKDCRD-GYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRI 123
LVT +DP + H H LVGK C + G G + F NLG+ V KK + +I ++
Sbjct: 95 LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKL 154
Query: 124 ---KAGINPFNVPEKQLNDIED--------CDLNVVRLCFQVFLPDEHGNLTTALPPVVS 172
+ P + E + ++E DL++VRL F FL G+ + L PV+S
Sbjct: 155 QRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVIS 214
Query: 173 NPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLND---WEAKG 229
PI+D+++P + L+I R++K GSVRGGDE++LLCDKVQKDDIEVRF +D W+A G
Sbjct: 215 QPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFG 274
Query: 230 IFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYG 288
FS DVH+Q AIVF+TPPY K I PVTV +QL+R +VS+S F Y P +D
Sbjct: 275 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYPLVEDKEE 334
Query: 289 NKAKKQKTTLLFQK 302
+ K++K F +
Sbjct: 335 VQRKRRKALPTFSQ 348
>gi|117320527 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 249 bits (636), Expect = 5e-66
Identities = 136/314 (43%), Positives = 188/314 (59%), Gaps = 16/314 (5%)
Query: 5 AYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT 64
A PY+ I+EQP+QRG RFRY CEG S G +PG S +TYP+++I NY G K+ +
Sbjct: 35 ADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVD 94
Query: 65 LVTKNDPYKPHPHDLVGKDCRD-GYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRI 123
LVT +DP + H H LVGK C + G G + F NLG+ V KK + +I ++
Sbjct: 95 LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKL 154
Query: 124 ---KAGINPFNVPEKQLNDIED--------CDLNVVRLCFQVFLPDEHGNLTTALPPVVS 172
+ P + E + ++E DL++VRL F FL G+ + L PV+S
Sbjct: 155 QRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVIS 214
Query: 173 NPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLND---WEAKG 229
PI+D+++P + L+I R++K GSVRGGDE++LLCDKVQKDDIEVRF +D W+A G
Sbjct: 215 QPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFG 274
Query: 230 IFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYG 288
FS DVH+Q AIVF+TPPY K I PVTV +QL+R +VS+S F Y P +D
Sbjct: 275 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYPLVEDKEE 334
Query: 289 NKAKKQKTTLLFQK 302
+ K++K F +
Sbjct: 335 VQRKRRKALPTFSQ 348
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 53.5 bits (127), Expect = 6e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 53.5 bits (127), Expect = 6e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 53.5 bits (127), Expect = 6e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 53.5 bits (127), Expect = 6e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 52.8 bits (125), Expect = 9e-07
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 15/86 (17%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT-VNFPERPRPGLLGSIGEGRYFKKEPNL 366
VE GF HV Q GLELLTS DPPT ASQSAGIT V+ P L S+ E + F
Sbjct: 358 VEKGFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPH---LSSLPEPKVF------ 408
Query: 367 FSHDAVVREMPTGVSSQAESYYPSPG 392
+ + R++P S A+ +P+ G
Sbjct: 409 --NGGLGRKLPV---SSAQPLFPTAG 429
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGITVN 341
+ET F HV Q GLELLTSGD PTLASQSAGIT +
Sbjct: 236 LETVFHHVSQAGLELLTSGDLPTLASQSAGITAS 269
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
+ETGF V Q GL+LLTS DPP L SQSAGIT
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGIT 141
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 47.0 bits (110), Expect = 5e-05
Identities = 26/40 (65%), Positives = 27/40 (67%)
Query: 300 FQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
FQ + VE GF HV Q GLELL S D PT ASQSAGIT
Sbjct: 29 FQLIFVFLVEMGFHHVGQAGLELLISSDLPTSASQSAGIT 68
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 292 KKQKTTLLFQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLL 351
+K+ + Q+ H E GF H Q LELL S D P ASQSAGIT R +PGL
Sbjct: 59 RKEPWNVKRQEAADGHPEMGFHHATQACLELLGSSDLPASASQSAGIT-GVNHRAQPGLN 117
Query: 352 GSI 354
S+
Sbjct: 118 VSV 120
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 292 KKQKTTLLFQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLL 351
+K+ + Q+ H E GF H Q LELL S D P ASQSAGIT R +PGL
Sbjct: 59 RKEPWNVKRQEAADGHPEMGFHHATQACLELLGSSDLPASASQSAGIT-GVNHRAQPGLN 117
Query: 352 GSI 354
S+
Sbjct: 118 VSV 120
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 43.9 bits (102), Expect = 4e-04
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGI 338
VETGF HV GLELL S DPPT SQS G+
Sbjct: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 311 GFRHVDQDGLELLTSGDPPTLASQSAGIT 339
G HV Q GLELLTS DPPT ASQ+A IT
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEIT 30
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 311 GFRHVDQDGLELLTSGDPPTLASQSAGIT 339
G HV Q GLELLTS DPPT ASQ+A IT
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEIT 30
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 311 GFRHVDQDGLELLTSGDPPTLASQSAGIT 339
G HV Q GLELLTS DPPT ASQ+A IT
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEIT 30
>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
isoform b [Homo sapiens]
Length = 307
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 309 ETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFP 343
ETGF HV Q GL+LL+S +PP SQSA IT P
Sbjct: 93 ETGFHHVAQAGLKLLSSSNPPASTSQSAKITDLLP 127
>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
sapiens]
Length = 631
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/41 (56%), Positives = 25/41 (60%)
Query: 299 LFQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
L K + VETGF HV Q +E LTS DP AS SAGIT
Sbjct: 60 LASKNAEVTVETGFHHVSQADIEFLTSIDPTASASGSAGIT 100
Score = 39.3 bits (90), Expect = 0.011
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 306 DHVETGFRHVDQDGLELLTSGDPPTLASQSAGITV 340
D ETG V Q GL+LL S DPP LAS++A +TV
Sbjct: 35 DDSETGSDCVTQAGLQLLASSDPPALASKNAEVTV 69
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 41.6 bits (96), Expect = 0.002
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 20/233 (8%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSN- 439
SS ++S S SS S+ + + SS S + + S N+N S S+ + S+
Sbjct: 678 SSSSDSSNSSDSSDSSDSSNSSESSDSSDSS-DSDSSDSSDSSNSNSSDSDSSNSSDSSD 736
Query: 440 -SQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNM 498
S N ++S++ +N+ D SS S+D SD N SN S
Sbjct: 737 SSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSS-DSSDSSNSSDSNDSSNSS--- 792
Query: 499 MTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQ 558
SSDS +D S N + S +S D S+SS S+ +++++
Sbjct: 793 --DSSDSSNSSD-----SSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSS----DS 841
Query: 559 SDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
SD+ + SD S +D+S N S SNS++ + +S S S NE + S
Sbjct: 842 SDSSDSSDGSDSDSS--NRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSS 892
Score = 41.6 bits (96), Expect = 0.002
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
SS ++S S SS S+ + + +SS +S + + S +++ S S + SNS
Sbjct: 900 SSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNS 959
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEAS-SMPSADLYGISDPNMLSNCSVNMM 499
+ N+S++ N++D +S S S+D SD + SN S
Sbjct: 960 S-----------DSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSS---- 1004
Query: 500 TTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGAN--SNTTVFVS 557
SSDS +D+ + + S NS D D S SS S+ ++ SN++
Sbjct: 1005 -DSSDSSDSSDSSNSSDSSNSSDSSNSS-DSSDSSDSSDSSDSSDSSDSSDSSNSSDSSD 1062
Query: 558 QSDAFEGSDFS-CADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
SD+ + SD S +D+S +ES S+ ++ +S S + SDS
Sbjct: 1063 SSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS 1117
Score = 40.8 bits (94), Expect = 0.004
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 28/233 (12%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
SS ++S S SS S ++ + +SS SS + + S +++ S S + S+S
Sbjct: 633 SSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDS 692
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
++SN+ +++ D ++S + SD + ++ + +
Sbjct: 693 S--------------DSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSS 738
Query: 501 TSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGAN----------- 549
SSDS +D+ + + S NS D D S SS S+ +N
Sbjct: 739 NSSDSSDSSDSSNSSDSSDSSDSSNSS-DSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDS 797
Query: 550 SNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGS 602
SN++ + SD+ + SD S +D+S N S SNS++ + DS S S
Sbjct: 798 SNSSDSSNSSDSSDSSDSSDSDSS--NSSDSSNSSDSSDSSNSSDSSDSSDSS 848
Score = 38.9 bits (89), Expect = 0.014
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 9/231 (3%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
S+ ++S S SS S + + SS SS + + S +++ S S + S+S
Sbjct: 1016 SNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDS 1075
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
+D +SN+ +++ D + S S+D SD + SN S + +
Sbjct: 1076 SDSSDSSESSDSSD--SSNSSDSSDSSD----SSDSSDSSDSSDSSDSSDSSNSSDSSDS 1129
Query: 501 TSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSD 560
+ S ++ N S + E+ + D D S SS S+ +SN++ SD
Sbjct: 1130 SDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSD-SSNSSDSSDSSD 1188
Query: 561 AFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
+ + SD S + +S + S S+S++ + DS S S NE SDS
Sbjct: 1189 SSDSSDSSDSSDSS-DSSDSSDSSDSSDSSDSSDSSDSSDSSDSNES-SDS 1237
Score = 38.5 bits (88), Expect = 0.019
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 13/242 (5%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
SS ++S S SS S ++ + SS SS + S ++ +S + +S
Sbjct: 815 SSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSS 874
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEAS-SMPSADLYGISDPNMLSNCSVNMM 499
N+S++ +N+ D ++S S S+D SD + SN S N
Sbjct: 875 NSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDN-- 932
Query: 500 TTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQS 559
+ SSDS +D+ + + S NS SS S + +S+++ S
Sbjct: 933 SNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSS 992
Query: 560 DAFEGSDFS----------CADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLS 609
D+ + SD S +D+S ++S S+ ++ +S S + S
Sbjct: 993 DSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1052
Query: 610 DS 611
DS
Sbjct: 1053 DS 1054
Score = 37.7 bits (86), Expect = 0.032
Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 26/239 (10%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
S +ES S SS S + + SS SS + + S N++ S S + S+S
Sbjct: 1079 SDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDS 1138
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
N ++S++ +++ D SS S+D SD + SN S + +
Sbjct: 1139 S-----------NSSDSSDSSESSDSSDSSDSSDSS-DSSDSSDSSDSSDSSNSSDS--S 1184
Query: 501 TSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGAN--------SNT 552
SSDS +D+ + + S +S D D S SS S+ +N S++
Sbjct: 1185 DSSDSSDSSDSSDSSDSSDSSDSSDSS-DSSDSSDSSDSSDSSDSSDSNESSDSSDSSDS 1243
Query: 553 TVFVSQSDAFEGSDFSCADNSMINES-GPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSD 610
+ + SD+ + SD S + + +ES S S N N++G DS GS N SD
Sbjct: 1244 SDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNNNG--SDSDSDSEGSDSNHSTSD 1300
Score = 37.0 bits (84), Expect = 0.054
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 20/231 (8%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
S+ ++S S SS S + S S S + +S +++ SS S+ S+
Sbjct: 599 SNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSD 658
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
N N+S++ +++ D SS S+D SD + S S + +
Sbjct: 659 SS----------NSSNSSDSSDSSDSSDSSSSSDSSN-SSDSSDSSDSSNSSESSDSSDS 707
Query: 501 TSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSD 560
+ SDS +D+ S + ++ + + D + SS S + +SN++ SD
Sbjct: 708 SDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSN-------SSDSSDSSDSSNSSDSSDSSD 760
Query: 561 AFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
+ SD S + +S + S SNS++ N DS S S + SDS
Sbjct: 761 SSNSSDSSDSSDSS-DSSDSSNSSDSNDSSNSSDSSDSS-NSSDSSNSSDS 809
Score = 36.6 bits (83), Expect = 0.070
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 21/250 (8%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
S+ ++S S SS S+ + + SS SS + + S N++ S+ S + SNS
Sbjct: 780 SNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSD-SSNSSDSSNSSDSSDSSNS 838
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
G+D ++SN +N+ D SS S+D SD N SN S + +
Sbjct: 839 SDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSN-SSDSSDSSDSNESSNSSDSSDS 897
Query: 501 T------SSDSMGETDNPRLLSMNLENPSCNSV-----------LDPRDLRQLHQMSSSS 543
+ SSDS +D+ + + + S NS D D S SS
Sbjct: 898 SNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSS 957
Query: 544 MSA-GANSNTTVFVSQSDAFEGSDFS-CADNSMINESGPSNSTNPNSHGFVQDSQYSGIG 601
S+ +NS+ + + SD+ + S+ S +D+S ++S S+ ++ +S
Sbjct: 958 NSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSN 1017
Query: 602 SMQNEQLSDS 611
S + SDS
Sbjct: 1018 SSDSSNSSDS 1027
Score = 34.7 bits (78), Expect = 0.27
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 500 TTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQS 559
T +SDS G +N N ++ S D D +SS S ++S+++ S S
Sbjct: 521 TNNSDSNGNGNNGN--DDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSS 578
Query: 560 DAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
D SD S +D+S ++S S+S+N + DS S S ++ SDS
Sbjct: 579 D----SDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDS 626
Score = 34.3 bits (77), Expect = 0.35
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 21/231 (9%)
Query: 381 SSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNS 440
S ++S S SS S + + SS SS + + S N++ S S + S+S
Sbjct: 1049 SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDS 1108
Query: 441 QGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMT 500
+ ++S++ +N+ D SS S+D SD + S S + +
Sbjct: 1109 S-----------DSSDSSDSSDSSNSSDSSDSSDSS-DSSDSSNSSDSSDSSESSDS--S 1154
Query: 501 TSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSD 560
SSDS +D+ + + S NS D D S SS S+ ++ ++ SD
Sbjct: 1155 DSSDSSDSSDSSDSSDSSDSSDSSNSS-DSSDSSDSSDSSDSSDSSDSSDSS----DSSD 1209
Query: 561 AFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
+ + SD S D+S ++S S+ +N +S S + SDS
Sbjct: 1210 SSDSSDSS--DSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDS 1258
Score = 30.8 bits (68), Expect = 3.9
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 502 SSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDA 561
SSDS +D+ S + ++ NS D D SS + +SN++ SD+
Sbjct: 554 SSDSSNSSDSSD--SSDSDSSDSNSSSDS-DSSDSDSSDSSDSDSSDSSNSSDSSDSSDS 610
Query: 562 FEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
+ SD S + +S ++S S S + +S S + S N SDS
Sbjct: 611 SDSSDSSDSSDSK-SDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDS 659
Score = 30.8 bits (68), Expect = 3.9
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 453 NDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTT-SSDSMGETDN 511
+D + S++ N++ D ++ S S+D SD + SN S + ++ SSDS +D+
Sbjct: 564 SDSSDSDSSDSNSSSDSDSSDSDSSDSSD----SDSSDSSNSSDSSDSSDSSDSSDSSDS 619
Query: 512 PRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCAD 571
S + ++ S +S D + S+S + NS+++ + S++ + SD S +
Sbjct: 620 SDSKSDSSKSESDSSDSDSKS----DSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSS 675
Query: 572 NSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDS 611
+S + S SNS++ + +S S S ++ SDS
Sbjct: 676 DSS-SSSDSSNSSDSSDSSDSSNSSESSDSSDSSD--SDS 712
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/32 (71%), Positives = 23/32 (71%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
VETGF HV Q LELLTSG ASQSAGIT
Sbjct: 1041 VETGFHHVGQACLELLTSGGLLASASQSAGIT 1072
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 40.4 bits (93), Expect = 0.005
Identities = 23/42 (54%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 307 HVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRP 348
++ET HV Q LELL S DPP ASQSAGI PRP
Sbjct: 105 NLETESGHVTQSDLELLLSSDPPASASQSAGIR-GVRHHPRP 145
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 40.4 bits (93), Expect = 0.005
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 281 PDEKDTYGNKAKKQKTTLLFQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
P +DT K +K + K ETG R+V Q GLE L SGDP AS +AGIT
Sbjct: 15 PGLEDTTSKKKQKDRANQE-SKDGDPRKETGSRYVAQAGLEPLASGDPSASASHAAGIT 72
>gi|119964690 glycogenin 2 isoform b [Homo sapiens]
Length = 501
Score = 40.4 bits (93), Expect = 0.005
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 309 ETGFRHVDQDGLELLTSGDPPTLASQSAGITV 340
ET F H Q GLELL S + PT ASQSAG+TV
Sbjct: 3 ETEFHHGAQAGLELLRSSNSPTSASQSAGMTV 34
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 39.7 bits (91), Expect = 0.008
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 309 ETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
ETGF HV Q +E LTS DP AS SAGIT
Sbjct: 100 ETGFHHVSQADIEFLTSIDPTASASGSAGIT 130
Score = 37.7 bits (86), Expect = 0.032
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
+ETG V Q GL+LL S DPP LAS++A +T
Sbjct: 68 IETGSDCVTQAGLQLLASSDPPALASKNAEVT 99
Score = 32.3 bits (72), Expect = 1.3
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 306 DHVETGFRHVDQDGLELLTSGDPPTLASQSA 336
D E G V Q GLELL SGDP ASQ+A
Sbjct: 35 DDSELGSHCVAQTGLELLASGDPLPSASQNA 65
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,987,622
Number of Sequences: 37866
Number of extensions: 1296541
Number of successful extensions: 3304
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 2961
Number of HSP's gapped (non-prelim): 246
length of query: 619
length of database: 18,247,518
effective HSP length: 108
effective length of query: 511
effective length of database: 14,157,990
effective search space: 7234732890
effective search space used: 7234732890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.