Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC3A2 Sequence: fasta or formatted (631aa) NCBI GI: 61744477
Description:

solute carrier family 3, member 2 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [661aa] solute carrier family 3, member 2 isoform a
alt prot [599aa] solute carrier family 3, member 2 isoform d
alt prot [568aa] solute carrier family 3, member 2 isoform e
alt prot [529aa] solute carrier family 3, member 2 isoform f
alt prot [630aa] solute carrier family 3, member 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         63           5
 C cysteine            0.5          3           1
 D aspartate           6.0         38           2
 E glutamate           6.3         40           2
 F phenylalanine       3.6         23           1
 G glycine             8.4         53           1
 H histidine           1.7         11           2
 I isoleucine          3.2         20           2
 K lysine              4.6         29           3
 L leucine            14.3         90           4
 M methionine          1.6         10           1
 N asparagine          2.9         18           1
 P proline             4.9         31           2
 Q glutamine           4.9         31           2
 R arginine            3.8         24           2
 S serine             10.0         63           2
 T threonine           4.6         29           1
 V valine              5.2         33           2
 W tryptophan          2.1         13           2
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 3, member 2 isoform b 
SLC3A2                0.981   solute carrier family 3, member 2 isoform a 
SLC3A2                0.948   solute carrier family 3, member 2 isoform c 
SLC3A2                0.917   solute carrier family 3, member 2 isoform d 
SLC3A2                0.863   solute carrier family 3, member 2 isoform e 
SLC3A2                0.839   solute carrier family 3, member 2 isoform f 
SLC3A1                0.082   solute carrier family 3, member 1 
STAP2                 0.022   signal transducing adaptor family member 2 isoform 1...
UTY                   0.017   tetratricopeptide repeat protein isoform 1 
SUGT1                 0.016   suppressor of G2 allele of SKP1 isoform a 
CNGA1                 0.016   cyclic nucleotide gated channel alpha 1 isoform 1 [...
PODXL                 0.016   podocalyxin-like isoform 1 precursor 
LOC100128260          0.015   PREDICTED: hCG_1742852 
LOC100128260          0.015   PREDICTED: hCG_1742852 
LOC100288773          0.015   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.015   PREDICTED: hCG_1742852 
C9orf37               0.015   chromosome 9 open reading frame 37 
USP19                 0.014   ubiquitin thioesterase 19 
C16orf89              0.014   hypothetical protein LOC146556 isoform 1 
REL                   0.014   v-rel reticuloendotheliosis viral oncogene homolog [H...
CHFR                  0.014   checkpoint with forkhead and ring finger domains is...
ZNF195                0.013   zinc finger protein 195 isoform 2 
ZNF195                0.013   zinc finger protein 195 isoform 1 
SULT1C2               0.012   sulfotransferase family, cytosolic, 1C, member 1 iso...
CHEK2                 0.012   protein kinase CHK2 isoform c 
LOC100294407          0.012   PREDICTED: similar to hCG2039376 
LOC100132815          0.012   PREDICTED: hypothetical protein 
LOC100132815          0.012   PREDICTED: hypothetical protein 
LOC100132815          0.012   PREDICTED: hypothetical protein 
C15orf40              0.011   hypothetical protein LOC123207 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press