Guide to the Human Genome
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Name: PPM1D Sequence: fasta or formatted (605aa) NCBI GI: 4505997
Description:

protein phosphatase 1D

Referenced in:

Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         42           2
 C cysteine            2.1         13           2
 D aspartate           4.6         28           2
 E glutamate           6.3         38           2
 F phenylalanine       2.6         16           2
 G glycine             6.9         42           2
 H histidine           2.3         14           1
 I isoleucine          3.8         23           2
 K lysine              6.1         37           2
 L leucine             7.6         46           2
 M methionine          3.0         18           1
 N asparagine          4.3         26           2
 P proline             8.3         50           2
 Q glutamine           4.0         24           1
 R arginine            7.1         43           3
 S serine              8.8         53           2
 T threonine           5.1         31           2
 V valine              7.4         45           2
 W tryptophan          1.3          8           1
 Y tyrosine            1.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1D 
FLJ40125              0.059   protein phosphatase 1B-like 
PPM1A                 0.051   protein phosphatase 1A isoform 1 
PPM1A                 0.051   protein phosphatase 1A isoform 2 
PPM1A                 0.051   protein phosphatase 1A isoform 3 
PPM1B                 0.051   protein phosphatase 1B isoform 5 
PPM1B                 0.051   protein phosphatase 1B isoform 4 
PPM1B                 0.051   protein phosphatase 1B isoform 2 
PPM1B                 0.051   protein phosphatase 1B isoform 1 
PPM1E                 0.046   protein phosphatase 1E 
PPM1F                 0.044   protein phosphatase 1F 
PPM1L                 0.041   protein phosphatase 1 (formerly 2C)-like 
PPM1K                 0.038   protein phosphatase 1K (PP2C domain containing) [Ho...
ILKAP                 0.037   integrin-linked kinase-associated protein phosphatas...
PPM1G                 0.037   protein phosphatase 1G 
PPM1G                 0.037   protein phosphatase 1G 
PDP1                  0.029   pyruvate dehyrogenase phosphatase catalytic subunit ...
PDP1                  0.029   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.029   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.029   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.029   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP2                  0.024   pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...
HCN4                  0.014   hyperpolarization activated cyclic nucleotide-gated p...
C1orf116              0.012   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.012   specifically androgen-regulated protein isoform 1 [...
MLL                   0.010   myeloid/lymphoid or mixed-lineage leukemia protein [...
FOXK1                 0.010   forkhead box K1 
GMIP                  0.010   GEM interacting protein 
SRRM1                 0.010   serine/arginine repetitive matrix 1 
TAF4                  0.009   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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