Guide to the Human Genome
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Name: PPM1B Sequence: fasta or formatted (479aa) NCBI GI: 4505995
Description:

protein phosphatase 1B isoform 1

Referenced in:

Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [387aa] protein phosphatase 1B isoform 2
alt prot [192aa] protein phosphatase 1B isoform 3
alt prot [327aa] protein phosphatase 1B isoform 4
alt prot [380aa] protein phosphatase 1B isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         35           2
 C cysteine            2.1         10           1
 D aspartate           6.1         29           2
 E glutamate          10.4         50           2
 F phenylalanine       2.1         10           2
 G glycine             8.8         42           3
 H histidine           3.1         15           1
 I isoleucine          4.2         20           2
 K lysine              4.8         23           2
 L leucine             7.5         36           2
 M methionine          3.3         16           1
 N asparagine          5.6         27           1
 P proline             3.5         17           2
 Q glutamine           2.1         10           1
 R arginine            5.6         27           1
 S serine              9.4         45           2
 T threonine           3.3         16           2
 V valine              7.1         34           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1B isoform 1 
PPM1B                 0.799   protein phosphatase 1B isoform 2 
PPM1B                 0.795   protein phosphatase 1B isoform 5 
PPM1B                 0.674   protein phosphatase 1B isoform 4 
PPM1A                 0.606   protein phosphatase 1A isoform 1 
PPM1A                 0.606   protein phosphatase 1A isoform 3 
PPM1A                 0.522   protein phosphatase 1A isoform 2 
PPM1B                 0.371   protein phosphatase 1B isoform 3 
FLJ40125              0.292   protein phosphatase 1B-like 
PPM1G                 0.109   protein phosphatase 1G 
PPM1G                 0.109   protein phosphatase 1G 
PPM1L                 0.107   protein phosphatase 1 (formerly 2C)-like 
ILKAP                 0.093   integrin-linked kinase-associated protein phosphatas...
PPM1E                 0.084   protein phosphatase 1E 
PPM1K                 0.081   protein phosphatase 1K (PP2C domain containing) [Ho...
PPM1F                 0.078   protein phosphatase 1F 
PPM1D                 0.065   protein phosphatase 1D 
PPM1H                 0.036   protein phosphatase 1H (PP2C domain containing) [Ho...
PDP2                  0.034   pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...
PPM1M                 0.032   protein phosphatase 1M isoform b 
PPM1M                 0.032   protein phosphatase 1M isoform a 
PPM1J                 0.030   protein phosphatase 1J (PP2C domain containing) [Hom...
PDP1                  0.027   pyruvate dehyrogenase phosphatase catalytic subunit ...
PDP1                  0.027   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.027   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.027   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.027   pyruvate dehyrogenase phosphatase catalytic subunit...
PHLPP1                0.024   PH domain and leucine rich repeat protein phosphatas...
CUX1                  0.012   cut-like homeobox 1 isoform a 
SPEG                  0.008   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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