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Search of human proteins with 4505405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
(560 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 1170 0.0
gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor... 1161 0.0
gi|5902084 silver homolog [Homo sapiens] 166 4e-41
gi|197313781 transmembrane protein 130 isoform c [Homo sapiens] 50 7e-06
gi|197313779 transmembrane protein 130 isoform a [Homo sapiens] 50 7e-06
gi|23097274 transmembrane protein 130 isoform b [Homo sapiens] 50 7e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 0.006
gi|150378539 piccolo isoform 1 [Homo sapiens] 40 0.006
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 39 0.010
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 39 0.013
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 39 0.013
gi|52485606 formin-like 2 [Homo sapiens] 39 0.016
gi|13273315 homeobox B4 [Homo sapiens] 39 0.016
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens] 39 0.016
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens] 39 0.016
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 38 0.022
gi|47132519 Ras association and pleckstrin homology domains 1 is... 38 0.022
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 38 0.022
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 38 0.028
gi|40807465 zinc finger protein 341 [Homo sapiens] 38 0.028
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 37 0.037
gi|157168329 formin 1 [Homo sapiens] 37 0.048
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 37 0.048
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.063
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 37 0.063
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 37 0.063
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.063
gi|7706469 Kruppel-like factor [Homo sapiens] 36 0.082
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 36 0.082
gi|40548415 dishevelled associated activator of morphogenesis 2 ... 36 0.082
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 1170 bits (3026), Expect = 0.0
Identities = 560/560 (100%), Positives = 560/560 (100%)
Query: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQIN 360
HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQIN
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQIN 360
Query: 361 RYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPT 420
RYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPT
Sbjct: 361 RYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPT 420
Query: 421 CEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTSTLISVPDRDPAS 480
CEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTSTLISVPDRDPAS
Sbjct: 421 CEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTSTLISVPDRDPAS 480
Query: 481 PLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKGLSVFLNRAKAVF 540
PLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKGLSVFLNRAKAVF
Sbjct: 481 PLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKGLSVFLNRAKAVF 540
Query: 541 FPGNQEKDPLLKNQEFKGVS 560
FPGNQEKDPLLKNQEFKGVS
Sbjct: 541 FPGNQEKDPLLKNQEFKGVS 560
>gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor
[Homo sapiens]
Length = 572
Score = 1161 bits (3003), Expect = 0.0
Identities = 560/572 (97%), Positives = 560/572 (97%), Gaps = 12/572 (2%)
Query: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSL------------GPAGDNPLE 348
HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSL GPAGDNPLE
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
Query: 349 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 408
LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI
Sbjct: 361 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 420
Query: 409 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 468
PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS
Sbjct: 421 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 480
Query: 469 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 528
TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG
Sbjct: 481 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 540
Query: 529 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 560
LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS
Sbjct: 541 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 572
>gi|5902084 silver homolog [Homo sapiens]
Length = 661
Score = 166 bits (421), Expect = 4e-41
Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 21/292 (7%)
Query: 54 WNEKLYPVWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGN 113
WN +LYP W + W+GG+V +++D P L+G+N +F++ L FP QK +G
Sbjct: 44 WNRQLYPEWTEAQRL--DCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101
Query: 114 IVYEKNCRNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNF 173
+++ N + W T + +FPDG P P ++ +F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149
Query: 174 IYVFHTLGQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHG-RAYVPIAQVKDVYVV 232
+YV+ T GQY+Q LG +S+ T LG MEVTVY R G R+YVP+A + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209
Query: 233 TDQIPVFVTMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLF 292
TDQ+P V++ Q + ++ FL++ P+ F + +HDPS +L + ++Y W FGD++G
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYLAEADLSYTWDFGDSSGTL 269
Query: 293 VSTNHTVNHTYVLNGTFSLNLTVKAAAP------GPCPPPPPPPRPSKPTPS 338
+S V HTY+ G + + ++AA P P P RP+ P+
Sbjct: 270 ISRALVVTHTYLEPGPVTAQVVLQAAIPLTSCGSSPVPGTTDGHRPTAEAPN 321
Score = 101 bits (251), Expect = 2e-21
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 304 VLNGTFSLNLTVK-----AAAPGPCPPPPPPPRPS-----KPTPSLGPAGDNPLELSRIP 353
VL+GT + +T A P P P P S T SLGP D L +
Sbjct: 409 VLSGTTAAQVTTTEWVETTARELPIPEPEGPDASSIMSTESITGSLGPLLDGTATLRLVK 468
Query: 354 DE---NCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPT 410
+ +C + RYG F T+ IV+GI + ++L VP E + V+CQG +P
Sbjct: 469 RQVPLDCVLYRYGSFSVTLDIVQGI------ESAEILQAVPSGEGDAFELTVSCQGGLPK 522
Query: 411 EVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTF-NGSGTYCVNLTLGDDTSLALTST 469
E C IS P C+ +C PV C L + + GSGTYC+N++L D SLA+ ST
Sbjct: 523 EACMEISSPGCQPPAQRLCQPVLPSPACQLVLHQILKGGSGTYCLNVSLADTNSLAVVST 582
Query: 470 LISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKK 509
+ +P ++ + LI L + V++ L+Y++
Sbjct: 583 QLIMPGQEAG----LGQVPLIVGILLVLMAVVLASLIYRR 618
>gi|197313781 transmembrane protein 130 isoform c [Homo sapiens]
Length = 321
Score = 49.7 bits (117), Expect = 7e-06
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 48 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 106
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGHFQATITIVE 373
V A P R K + G F A++ + E
Sbjct: 107 KVVAEWE---EVEPDATRAVK-------------------------QKTGDFSASLKLQE 138
Query: 374 GILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPTCEITQNTVCSPVD 433
+ + ++ T L+ + ++F+ GS P VC + P C + C PV
Sbjct: 139 TLRGIQVLGPT--LIQTFQKMTVTLNFL----GSPPLTVCWRLK-PECLPLEEGECHPVS 191
Query: 434 VDEMCLLTVRRTFNGSGTYCVNL 456
V + TF G YC ++
Sbjct: 192 VASTA-YNLTHTFRDPGDYCFSI 213
>gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]
Length = 435
Score = 49.7 bits (117), Expect = 7e-06
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGHFQATITIVE 373
V A P R K + G F A++ + E
Sbjct: 209 KVVAEWE---EVEPDATRAVK-------------------------QKTGDFSASLKLQE 240
Query: 374 GILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPTCEITQNTVCSPVD 433
+ + ++ T L+ + ++F+ GS P VC + P C + C PV
Sbjct: 241 TLRGIQVLGPT--LIQTFQKMTVTLNFL----GSPPLTVCWRLK-PECLPLEEGECHPVS 293
Query: 434 VDEMCLLTVRRTFNGSGTYCVNL 456
V + TF G YC ++
Sbjct: 294 VASTA-YNLTHTFRDPGDYCFSI 315
>gi|23097274 transmembrane protein 130 isoform b [Homo sapiens]
Length = 423
Score = 49.7 bits (117), Expect = 7e-06
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGHFQATITIVE 373
V A P R K + G F A++ + E
Sbjct: 209 KVVAEWE---EVEPDATRAVK-------------------------QKTGDFSASLKLQE 240
Query: 374 GILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPTCEITQNTVCSPVD 433
+ + ++ T L+ + ++F+ GS P VC + P C + C PV
Sbjct: 241 TLRGIQVLGPT--LIQTFQKMTVTLNFL----GSPPLTVCWRLK-PECLPLEEGECHPVS 293
Query: 434 VDEMCLLTVRRTFNGSGTYCVNL 456
V + TF G YC ++
Sbjct: 294 VASTA-YNLTHTFRDPGDYCFSI 315
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.0 bits (92), Expect = 0.006
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
SL+++ + P P PPPPPPP P P P L P
Sbjct: 2398 SLDISAQPPPPPPPPPPPPPPPPPPPPPPLPP 2429
Score = 37.4 bits (85), Expect = 0.037
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S +L + A P P PPPPPPP P P P
Sbjct: 2396 SSSLDISAQPPPPPPPPPPPPPPPPPPP 2423
Score = 35.8 bits (81), Expect = 0.11
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSR 351
P P PPPPPPP P P P P P L +
Sbjct: 2409 PPPPPPPPPPPPPPPPPPLPPPTSPKPTILPK 2440
Score = 32.7 bits (73), Expect = 0.90
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 309 FSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
F + ++ +A P PPPPPPP P P P P
Sbjct: 2393 FFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPP 2425
Score = 31.2 bits (69), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 320 PGPCPPPPPPPRPSKPTP 337
PGP PPP P P+KP P
Sbjct: 474 PGPAKPPPQQPGPAKPPP 491
Score = 30.4 bits (67), Expect = 4.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 324 PPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
PPPPPPP P P P P P S P
Sbjct: 2406 PPPPPPPPPPPPPPPPPPPPPLPPPTSPKP 2435
Score = 29.3 bits (64), Expect = 10.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 325 PPPPPPRPSKPTPSLGPAGDNPL 347
PPPPPP P P P P PL
Sbjct: 2405 PPPPPPPPPPPPPPPPPPPPPPL 2427
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.0 bits (92), Expect = 0.006
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
SL+++ + P P PPPPPPP P P P L P
Sbjct: 2398 SLDISAQPPPPPPPPPPPPPPPPPPPPPPLPP 2429
Score = 37.4 bits (85), Expect = 0.037
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S +L + A P P PPPPPPP P P P
Sbjct: 2396 SSSLDISAQPPPPPPPPPPPPPPPPPPP 2423
Score = 35.8 bits (81), Expect = 0.11
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSR 351
P P PPPPPPP P P P P P L +
Sbjct: 2409 PPPPPPPPPPPPPPPPPPLPPPTSPKPTILPK 2440
Score = 32.7 bits (73), Expect = 0.90
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 309 FSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
F + ++ +A P PPPPPPP P P P P
Sbjct: 2393 FFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPP 2425
Score = 31.2 bits (69), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 320 PGPCPPPPPPPRPSKPTP 337
PGP PPP P P+KP P
Sbjct: 474 PGPAKPPPQQPGPAKPPP 491
Score = 30.4 bits (67), Expect = 4.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 324 PPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
PPPPPPP P P P P P S P
Sbjct: 2406 PPPPPPPPPPPPPPPPPPPPPLPPPTSPKP 2435
Score = 29.3 bits (64), Expect = 10.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 325 PPPPPPRPSKPTPSLGPAGDNPL 347
PPPPPP P P P P PL
Sbjct: 2405 PPPPPPPPPPPPPPPPPPPPPPL 2427
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 39.3 bits (90), Expect = 0.010
Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 318 AAPGPCPPPPPPPRP-----SKPTPSLGPAG 343
AAPGP PPPPPPP P + P P L P G
Sbjct: 834 AAPGPLPPPPPPPPPVPGPVTLPPPQLVPEG 864
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 38.9 bits (89), Expect = 0.013
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 317 AAAPGPCPPPPPPPRPSKPT--PSLGPAGDNPLELSRIPDENCQINRYGH------FQAT 368
A AP PCP P P PT P+LGP+ +NPL+ +P E + FQ T
Sbjct: 161 AVAPEPCPQPLRSPSLDNPTPFPNLGPS-ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQT 219
Query: 369 ITIVEGILEVNIIQMTDVLMP-----VPWPESSLID 399
I+ EG+ V ++ D +P +P P SL D
Sbjct: 220 ISCPEGLRLVG-SEVGDRTLPGWPVTLPDPGMSLTD 254
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 38.9 bits (89), Expect = 0.013
Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 317 AAAPGPCP---PPPPPPRPSKPTPSLGP--AGDNPLELSRI 352
AAAP P P PPPPPP P P PS GP GD L R+
Sbjct: 12 AAAPAPLPQPPPPPPPPPPPLPPPSGGPELEGDGLLLRERL 52
Score = 32.7 bits (73), Expect = 0.90
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 317 AAAPGPCPPPPPPPRPSKPTPSLGPAGDNP 346
A A P P P PPP P P P L P P
Sbjct: 10 ALAAAPAPLPQPPPPPPPPPPPLPPPSGGP 39
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 38.5 bits (88), Expect = 0.016
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGD 344
P P PPPPPPP P P P GPA +
Sbjct: 556 PPPPPPPPPPPPPPPPPPLPGPAAE 580
Score = 37.4 bits (85), Expect = 0.037
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S+ T+ AA+ GP PPPPPP PS TP
Sbjct: 513 SVGPTMGAASSGPLPPPPPPLPPSSDTP 540
Score = 33.5 bits (75), Expect = 0.53
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNP 346
P P PPPPPPP P P P P P
Sbjct: 551 PMPPPPPPPPPPPPPPPPPPPPPLPGP 577
Score = 33.1 bits (74), Expect = 0.69
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPL 347
P P PPPPPPP P P P+ PL
Sbjct: 560 PPPPPPPPPPPPPPLPGPAAETVPAPPL 587
Score = 29.3 bits (64), Expect = 10.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
TV+ P PPPPPP P P P P
Sbjct: 542 TVQNGPVTPPMPPPPPPPPPPPPPPPPP 569
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 38.5 bits (88), Expect = 0.016
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRI---PDENCQ 358
PGP PPPPPPP P P P L P P + P + C+
Sbjct: 71 PGP-PPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCE 111
>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
Length = 457
Score = 38.5 bits (88), Expect = 0.016
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 318 AAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQI 359
AAP PPPPPPPR + P S GPA P E P ++ ++
Sbjct: 63 AAPAAPPPPPPPPRTADPGGSPGPA---PAEAEPAPVQSLRV 101
>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
Length = 250
Score = 38.5 bits (88), Expect = 0.016
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 318 AAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQI 359
AAP PPPPPPPR + P S GPA P E P ++ ++
Sbjct: 63 AAPAAPPPPPPPPRTADPGGSPGPA---PAEAEPAPVQSLRV 101
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLEL 349
P P PPPPPPP P P PS P P+ L
Sbjct: 1999 PPPPPPPPPPPPPPPPPPSAPPQVQLPVSL 2028
Score = 37.0 bits (84), Expect = 0.048
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLEL 349
+++ ++A P P PPPPPPP P P P P+ ++L
Sbjct: 1985 TVSTPLQAPPPTPPPPPPPPPPPPPPPPPPPPSAPPQVQL 2024
Score = 35.0 bits (79), Expect = 0.18
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 308 TFSLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
T S L P P PPPPPPP P P P
Sbjct: 1985 TVSTPLQAPPPTPPPPPPPPPPPPPPPPPP 2014
Score = 31.6 bits (70), Expect = 2.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPL 347
P P PPPPPPP + P L + D PL
Sbjct: 2005 PPPPPPPPPPPPSAPPQVQLPVSLDLPL 2032
Score = 31.2 bits (69), Expect = 2.6
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 324 PPPPPPPRPSKPTP----SLGP 341
PPPPPPP P P P S+GP
Sbjct: 1958 PPPPPPPPPLPPAPPQPSSMGP 1979
Score = 31.2 bits (69), Expect = 2.6
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 307 GTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
G + TV P P PPPPP P P P P
Sbjct: 1978 GPVKIPNTVSTPLQAPPPTPPPPPPPPPPPPPPPP 2012
Score = 31.2 bits (69), Expect = 2.6
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 306 NGTFSLNLTVKAAAPGPC---PPPPPPPRPSKPTPSL 339
+ T S L++ +A P PPPPPPP P P+ SL
Sbjct: 3096 SATSSPALSLSSAPTKPLLQTPPPPPPPPPPPPSSSL 3132
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 38.1 bits (87), Expect = 0.022
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRI 352
P P PPPPPPP PS+ PS G A ++ S I
Sbjct: 638 PPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTI 670
Score = 35.0 bits (79), Expect = 0.18
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
P P PPPPPPP P P P P+ P S P
Sbjct: 629 PPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Score = 32.7 bits (73), Expect = 0.90
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGP 341
P P PPPPPPP P P P P
Sbjct: 627 PLPPPPPPPPPPPPPPPPPPPP 648
Score = 32.0 bits (71), Expect = 1.5
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 319 APGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGHFQATITIVEGILEV 378
A P PP PPPP P P P P PL P + + +TIT ++
Sbjct: 621 ASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKY-STITRLQ----- 674
Query: 379 NIIQMTDVLMPVPWP 393
N Q + L P P
Sbjct: 675 NASQHSGALFKPPTP 689
Score = 32.0 bits (71), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 317 AAAPGPCPPPPPPPRPSKPTPSLGP 341
A+ P P PPPPPP P P P P
Sbjct: 621 ASQPSPPLPPPPPPPPPPPPPPPPP 645
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 319 APGPCPPPPPPPRPSKPTP 337
+P P PPPPPPP S PTP
Sbjct: 933 SPVPAPPPPPPPTAS-PTP 950
Score = 31.2 bits (69), Expect = 2.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
T +P PPPPPPP P P P P
Sbjct: 620 TASQPSPPLPPPPPPPPPPPPPPPPPPP 647
Score = 31.2 bits (69), Expect = 2.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 322 PCPPPPPPPRPSKPTPSLGPA 342
P PPPPPPP P L PA
Sbjct: 711 PPPPPPPPPTPGSAMAQLKPA 731
Score = 30.0 bits (66), Expect = 5.9
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 273 FLNYSTINYKWSFGDNTG-LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPR 331
F+ YSTI + ++G LF V + S+ + G PPPPPPP
Sbjct: 664 FVKYSTITRLQNASQHSGALFKPPTPPVMQSQ------SVKPQILVPPNGVVPPPPPPPP 717
Query: 332 PSKPTPSLGPAGDNP 346
P PTP A P
Sbjct: 718 P--PTPGSAMAQLKP 730
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELS 350
P PCPP PPPP+P +P + AG++P E S
Sbjct: 82 PCPCPPQPPPPQP-QPPAAAPQAGEDPTETS 111
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 324 PPPPPPPRPSKPTPSLGPAGDNPLELSRI 352
PPPPPPP P +P G + LSR+
Sbjct: 189 PPPPPPPGPLRPLAGPSRKGSFKIRLSRL 217
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 37.7 bits (86), Expect = 0.028
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 304 VLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQIN 360
++NGT +A P PPPPP P+ P L P EL + + NC N
Sbjct: 723 IVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSELESVKENNCASN 779
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 314 TVKAAAPGPCPPPPP-PPRPSKPTP--SLGPAGDNPL 347
T+ PG PPPPP P PS P P S+ P G P+
Sbjct: 467 TMPGNPPGLLPPPPPGAPLPSLPFPPVSMMPNGPMPV 503
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 37.7 bits (86), Expect = 0.028
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAG 343
P P PPPPPP P P SLGP G
Sbjct: 185 PPPLPPPPPPQPPPPPPQSLGPPG 208
Score = 29.6 bits (65), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLEL 349
P P PPPPPP+ P P G+ +E+
Sbjct: 191 PPPPQPPPPPPQSLGPPGRPNPGGNGVVEV 220
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 37.4 bits (85), Expect = 0.037
Identities = 18/31 (58%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 312 NLTVKAAAPGPCPPPPPPPRPSKPTPSLGPA 342
NL V A P PC PPPPPP P P L PA
Sbjct: 211 NLPV-VAPPVPCAPPPPPPPPPPTPPPLPPA 240
Score = 33.1 bits (74), Expect = 0.69
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 305 LNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGP 341
L T + + A P P P PPPP P P P L P
Sbjct: 152 LGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPP 188
Score = 32.7 bits (73), Expect = 0.90
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 322 PCPPPPPPPRPSKPTPSLGPAGDNP 346
P PPPPPPP P P P P P
Sbjct: 2 PVPPPPPPPLPPPPPPLGAPPPPPP 26
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 313 LTVKAAAPGPCPPPPPP-PRPSKPTPSLGPAGDNPLELSR 351
+ V P P PPPPPP P P PS P + L R
Sbjct: 1 MPVPPPPPPPLPPPPPPLGAPPPPPPSAPPVSTDTSSLRR 40
Score = 31.2 bits (69), Expect = 2.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 319 APGPCPPPPPPPRPSKPTPSLGP 341
AP P PPPPPP P PS P
Sbjct: 173 APPPPTPPPPPPPLPPPLPSSSP 195
Score = 31.2 bits (69), Expect = 2.6
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 315 VKAAAPGPCPPPPPPPRPSKPTPSLGPAGDN----PLELSRIP 353
V A P P PPPPP P P P L PL L IP
Sbjct: 219 VPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIP 261
Score = 30.4 bits (67), Expect = 4.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 320 PGPCPPPPPPPRPSKPTP 337
P P PP PPPP P P P
Sbjct: 172 PAPPPPTPPPPPPPLPPP 189
Score = 29.3 bits (64), Expect = 10.0
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 315 VKAAAPGPCPPPPPPPRPSKP------TPSLGPAGDNPLELSRIP 353
V A P PPPPPP P P TP + P G PL +P
Sbjct: 171 VPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPG--PLTKGNLP 213
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 37.0 bits (84), Expect = 0.048
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 318 AAPGPCPPPPPPPRPSKPTPSLGPAGDNP 346
++ GP PPPPPPP P+ P P P G P
Sbjct: 694 SSAGPPPPPPPPPLPNSPAPP-NPGGPPP 721
Score = 35.4 bits (80), Expect = 0.14
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 318 AAPGPCPPPPPPPRPSKPTPSLGPAGDNP 346
+A P PPPPPPP P P S GP P
Sbjct: 675 SAGPPLPPPPPPPPPLPPPSSAGPPPPPP 703
Score = 32.7 bits (73), Expect = 0.90
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 317 AAAPGPCPPPPP------PPRPSKPTPSLGPAGDNP 346
+A P P PPPPP PP P P P+ P G P
Sbjct: 695 SAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAP 730
Score = 30.8 bits (68), Expect = 3.4
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 316 KAAAPGPCPPPPPPPRPS-----KPTPSLGPAGDNP 346
KA P P PPPPP PS P P + P P
Sbjct: 643 KALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGP 678
Score = 30.8 bits (68), Expect = 3.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 317 AAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
A P P PPPP P P+ P P P P L+ P
Sbjct: 696 AGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPP 732
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 320 PGPCPPP--------PPPPRPSKPTPSLGPAGDNP 346
P P PPP PPPP P P P+ PA NP
Sbjct: 683 PPPPPPPLPPPSSAGPPPPPPPPPLPN-SPAPPNP 716
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 37.0 bits (84), Expect = 0.048
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
P P PPPPPPP PS P P P +++P
Sbjct: 280 PPPSPPPPPPPPPSPLPPPPPPPPPTPSSTTKLP 313
Score = 32.7 bits (73), Expect = 0.90
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPAG 343
P P PPPPPPP P+ + + P G
Sbjct: 292 PSPLPPPPPPPPPTPSSTTKLPQG 315
Score = 32.0 bits (71), Expect = 1.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 319 APGPCPPPPPPPRPSKPT 336
+P P PPPPPPP PS T
Sbjct: 293 SPLPPPPPPPPPTPSSTT 310
Score = 31.2 bits (69), Expect = 2.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 319 APGPCPPP-----PPPPRPSKPTPS 338
+P P PPP PPPP P PTPS
Sbjct: 283 SPPPPPPPPPSPLPPPPPPPPPTPS 307
Score = 29.3 bits (64), Expect = 10.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 313 LTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNP 346
L + A P PPP PPP P P L P P
Sbjct: 269 LPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPP 302
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.6 bits (83), Expect = 0.063
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 319 APGPCPPP--------PPPPRPSKPTPSLGPA-GDNPLELSRIPDE 355
APGP PPP PPPP P P P GPA +P +P E
Sbjct: 19 APGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPE 64
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 318 AAPGPCPPPPPPP-----RPSKPTPSLGPAGDNP 346
A P P PPPPPPP +P P P P G P
Sbjct: 16 ATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGP 49
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 317 AAAPGPCPPPPPPPRPSKP-TPSLGPAGDNP 346
AA+PGP PP PP P+ P P P G P
Sbjct: 769 AASPGPPPPASPPGAPASPRAPRTSPYGGLP 799
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 36.6 bits (83), Expect = 0.063
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 232 VTDQIPVFVTMFQKNDR-NSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTG 290
+T Q+PV V + SD + P+ F P + + Y W FGD +
Sbjct: 1114 LTQQVPVSVRASLPSVAVGVSDGVLVAGRPVTFY-----PHPLPSPGGVLYTWDFGDGSP 1168
Query: 291 LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPG 321
+ + NHTY GT+ + L V G
Sbjct: 1169 VLTQSQPAANHTYASRGTYHVRLEVNNTVSG 1199
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 269 DPSHFLNYSTINYKWSFGD-NTGLFVSTNHTVNHTYVLNGTFSLNLTVKA 317
+P+H+L + W+FGD ++ V TV H + +GTF L L + +
Sbjct: 1320 NPAHYL------FDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSS 1363
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 36.6 bits (83), Expect = 0.063
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 232 VTDQIPVFVTMFQKNDR-NSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTG 290
+T Q+PV V + SD + P+ F P + + Y W FGD +
Sbjct: 1114 LTQQVPVSVRASLPSVAVGVSDGVLVAGRPVTFY-----PHPLPSPGGVLYTWDFGDGSP 1168
Query: 291 LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPG 321
+ + NHTY GT+ + L V G
Sbjct: 1169 VLTQSQPAANHTYASRGTYHVRLEVNNTVSG 1199
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 269 DPSHFLNYSTINYKWSFGD-NTGLFVSTNHTVNHTYVLNGTFSLNLTVKA 317
+P+H+L + W+FGD ++ V TV H + +GTF L L + +
Sbjct: 1320 NPAHYL------FDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSS 1363
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 36.6 bits (83), Expect = 0.063
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 313 LTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPL------------------ELSRIPD 354
L V AP P PPPPPPP P P P L GD+ + +L ++
Sbjct: 366 LGVGPVAPPPPPPPPPPPGP-PPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQ 424
Query: 355 ENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLI 398
+ ++ G I +GI ++ + P P P S ++
Sbjct: 425 NSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIV 468
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 321 GPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIP 353
GP PPPPPP P P G P SR P
Sbjct: 286 GPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAP 318
Score = 32.0 bits (71), Expect = 1.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGPAGD 344
+V P PPPPPPP P P P G D
Sbjct: 364 SVLGVGPVAPPPPPPPPPPPGPPPPPGLPSD 394
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 319 APGPCPPPPPPPRPSKPTPSLGP 341
AP PPPPPP RPS P P
Sbjct: 317 APTAAPPPPPPSRPSVAVPPPPP 339
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 36.2 bits (82), Expect = 0.082
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 304 VLNGTFSLNLTVKAAAPGPCPPPPPP------PRPSKPTPSLGPAGDNPLELSR 351
VL+ S+ L A P PPPPPP P P P P PAG EL R
Sbjct: 44 VLDFILSMGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLR 97
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 36.2 bits (82), Expect = 0.082
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 320 PGPCPPPPPPPRPSKPTPSLGPA 342
P P PPPPPP +P P P+L PA
Sbjct: 1413 PPPPPPPPPPQQPLPPPPNLEPA 1435
Score = 32.7 bits (73), Expect = 0.90
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 319 APGPCPPPPPPPRPSKPTP 337
A P PPPPPPP P +P P
Sbjct: 1409 AQPPPPPPPPPPPPQQPLP 1427
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 319 APGPCPPPPPPPRPSKPTPSLGP 341
AP PPPPPPP P P L P
Sbjct: 1406 APPAQPPPPPPPPPPPPQQPLPP 1428
Score = 29.3 bits (64), Expect = 10.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 320 PGPCPPP----PPPPRPSKPTPSLGPAGD 344
P P PPP PPPP PSLG G+
Sbjct: 1416 PPPPPPPQQPLPPPPNLEPAPPSLGDPGE 1444
>gi|40548415 dishevelled associated activator of morphogenesis 2
[Homo sapiens]
Length = 1067
Score = 36.2 bits (82), Expect = 0.082
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 26/106 (24%)
Query: 308 TFSLNLTVKAAAPGP-------CPPPPPPPRP--SKPT-----PSLG----------PAG 343
T S ++T P P CPPPPPPP P PT P LG P+
Sbjct: 530 TLSSSMTTNDLPPPPPPLPFACCPPPPPPPLPPGGPPTPPGAPPCLGMGLPLPQDPYPSS 589
Query: 344 DNPLELSRIPDENCQINRYGHFQATITIVEGIL--EVNIIQMTDVL 387
D PL R+P + + + + V G + E++ +Q+ +L
Sbjct: 590 DVPLRKKRVPQPSHPLKSFNWVKLNEERVPGTVWNEIDDMQVFRIL 635
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,451,872
Number of Sequences: 37866
Number of extensions: 1391488
Number of successful extensions: 22064
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 14352
Number of HSP's gapped (non-prelim): 5236
length of query: 560
length of database: 18,247,518
effective HSP length: 107
effective length of query: 453
effective length of database: 14,195,856
effective search space: 6430722768
effective search space used: 6430722768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.