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Search of human proteins with 4503079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503079 colony stimulating factor 3 isoform a precursor
[Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503079 colony stimulating factor 3 isoform a precursor [Homo... 414 e-116
gi|27437049 colony stimulating factor 3 isoform b precursor [Hom... 404 e-113
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens] 379 e-105
gi|239755881 PREDICTED: hypothetical protein XP_002344730 [Homo ... 31 0.65
gi|239750407 PREDICTED: hypothetical protein XP_002347415 [Homo ... 31 0.65
gi|239744707 PREDICTED: hypothetical protein XP_002343200 [Homo ... 31 0.65
gi|153267448 enolase 3 [Homo sapiens] 30 1.1
gi|153267427 enolase 3 [Homo sapiens] 30 1.1
gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo sap... 30 1.4
gi|167555110 kinesin family member C1 [Homo sapiens] 29 2.5
gi|221316624 dystonin isoform 4 [Homo sapiens] 29 2.5
gi|221316622 dystonin isoform 3 [Homo sapiens] 29 2.5
gi|221316618 dystonin isoform 2 [Homo sapiens] 29 2.5
gi|34577047 dystonin isoform 1 [Homo sapiens] 29 2.5
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 29 2.5
gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom... 29 3.2
gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom... 29 3.2
gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo... 29 3.2
gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens] 28 4.2
gi|5031905 MyoD family inhibitor [Homo sapiens] 28 5.5
>gi|4503079 colony stimulating factor 3 isoform a precursor [Homo
sapiens]
Length = 207
Score = 414 bits (1065), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
Sbjct: 1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
Query: 61 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 120
LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
Sbjct: 61 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 120
Query: 121 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 180
LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
Sbjct: 121 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 180
Query: 181 AGGVLVASHLQSFLEVSYRVLRHLAQP 207
AGGVLVASHLQSFLEVSYRVLRHLAQP
Sbjct: 181 AGGVLVASHLQSFLEVSYRVLRHLAQP 207
>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
sapiens]
Length = 204
Score = 404 bits (1038), Expect = e-113
Identities = 204/207 (98%), Positives = 204/207 (98%), Gaps = 3/207 (1%)
Query: 1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
Sbjct: 1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
Query: 61 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 120
LQEKL CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
Sbjct: 61 LQEKL---CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 117
Query: 121 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 180
LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
Sbjct: 118 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 177
Query: 181 AGGVLVASHLQSFLEVSYRVLRHLAQP 207
AGGVLVASHLQSFLEVSYRVLRHLAQP
Sbjct: 178 AGGVLVASHLQSFLEVSYRVLRHLAQP 204
>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
Length = 200
Score = 379 bits (972), Expect = e-105
Identities = 191/194 (98%), Positives = 191/194 (98%), Gaps = 3/194 (1%)
Query: 14 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLVSECATYK 73
ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL CATYK
Sbjct: 10 ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKL---CATYK 66
Query: 74 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG 133
LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG
Sbjct: 67 LCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELG 126
Query: 134 PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF 193
PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF
Sbjct: 127 PTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSF 186
Query: 194 LEVSYRVLRHLAQP 207
LEVSYRVLRHLAQP
Sbjct: 187 LEVSYRVLRHLAQP 200
>gi|239755881 PREDICTED: hypothetical protein XP_002344730 [Homo
sapiens]
Length = 87
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 56 GDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 114
G AL + L+ CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 29 GGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|239750407 PREDICTED: hypothetical protein XP_002347415 [Homo
sapiens]
Length = 87
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 56 GDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 114
G AL + L+ CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 29 GGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|239744707 PREDICTED: hypothetical protein XP_002343200 [Homo
sapiens]
Length = 87
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 56 GDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 114
G AL + L+ CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 29 GGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|153267448 enolase 3 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 114 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 145
G +L +G+L+A+E I+ LGP L +L VAD
Sbjct: 55 GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86
>gi|153267427 enolase 3 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 114 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 145
G +L +G+L+A+E I+ LGP L +L VAD
Sbjct: 55 GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86
>gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo
sapiens]
Length = 189
Score = 30.0 bits (66), Expect = 1.4
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 107 CLSQLHSGLFLYQGLLQA-LEGISPELGPTLDTLQLDVADFATTIWQQME----ELGMAP 161
CL ++H GL Y+ LL + + P L P QL + + Q E E P
Sbjct: 89 CLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEGHHWETQQIP 148
Query: 162 ALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRH 203
+L P+Q +QR + LQ+F+ V+ RV H
Sbjct: 149 SLSPSQ--------PWQRLLLRFKILRSLQAFVAVAARVFAH 182
>gi|167555110 kinesin family member C1 [Homo sapiens]
Length = 673
Score = 29.3 bits (64), Expect = 2.5
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 44 LLKCLEQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQ 103
L +C E+ + + + LQ++L K E L GH L A +
Sbjct: 150 LKRCRERTQTLDQENQQLQDQLRDAQQQVKALGTERTTLEGH-LAKVQAQAEQGQQELKN 208
Query: 104 LAGCLSQLHSGLFLYQGLLQALEGISPEL 132
L C+ +L L +GL+Q L+ EL
Sbjct: 209 LRACVLELEERLSTQEGLVQELQKKQVEL 237
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 29.3 bits (64), Expect = 2.5
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 49 EQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCL 108
E ++K++ A L + +CHP+ + + H + I A + A Q L
Sbjct: 4910 EFMKKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRL 4969
Query: 109 SQLHSGLFLYQGLLQAL 125
+ +GL Q LL+AL
Sbjct: 4970 ASALAGLIAKQELLEAL 4986
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 29.3 bits (64), Expect = 2.5
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 49 EQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCL 108
E ++K++ A L + +CHP+ + + H + I A + A Q L
Sbjct: 4921 EFMKKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRL 4980
Query: 109 SQLHSGLFLYQGLLQAL 125
+ +GL Q LL+AL
Sbjct: 4981 ASALAGLIAKQELLEAL 4997
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 29.3 bits (64), Expect = 2.5
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 49 EQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCL 108
E ++K++ A L + +CHP+ + + H + I A + A Q L
Sbjct: 5059 EFMKKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRL 5118
Query: 109 SQLHSGLFLYQGLLQAL 125
+ +GL Q LL+AL
Sbjct: 5119 ASALAGLIAKQELLEAL 5135
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 29.3 bits (64), Expect = 2.5
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 49 EQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCL 108
E ++K++ A L + +CHP+ + + H + I A + A Q L
Sbjct: 4881 EFMKKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRL 4940
Query: 109 SQLHSGLFLYQGLLQAL 125
+ +GL Q LL+AL
Sbjct: 4941 ASALAGLIAKQELLEAL 4957
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 29.3 bits (64), Expect = 2.5
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 49 EQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCL 108
E ++K++ A L + +CHP+ + + H + I A + A Q L
Sbjct: 4555 EFMKKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWAKQHQQRL 4614
Query: 109 SQLHSGLFLYQGLLQAL 125
+ +GL Q LL+AL
Sbjct: 4615 ASALAGLIAKQELLEAL 4631
>gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo
sapiens]
Length = 246
Score = 28.9 bits (63), Expect = 3.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 84 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 141
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 71 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 128
>gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 28.9 bits (63), Expect = 3.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 84 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 141
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
>gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 28.9 bits (63), Expect = 3.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 84 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 141
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
>gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]
Length = 661
Score = 28.5 bits (62), Expect = 4.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 25 WTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLVSECATYKL 74
WT L P S + +L+KC E+ K + AAL++ V C +L
Sbjct: 399 WTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQL 448
>gi|5031905 MyoD family inhibitor [Homo sapiens]
Length = 246
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 126 EGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVL 185
+G P + LD+ LDV A T Q LG P L P P+ +R G L
Sbjct: 63 QGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLL-PNDSGHPSELGGTRRAGNGAL 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,298,259
Number of Sequences: 37866
Number of extensions: 363011
Number of successful extensions: 917
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 20
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.