Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 44889483
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44889483 cerebellar degeneration-related protein 1, 34kDa
[Homo sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44889483 cerebellar degeneration-related protein 1, 34kDa [Ho... 560 e-160
gi|210147567 hypothetical protein LOC220081 [Homo sapiens] 53 3e-07
gi|21361759 myotubularin related protein 8 [Homo sapiens] 35 0.066
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 34 0.11
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 34 0.11
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 33 0.25
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 33 0.25
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 33 0.25
gi|90669307 cyclin B3 isoform 3 [Homo sapiens] 33 0.25
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 33 0.33
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.33
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.43
gi|169636420 carbonic anhydrase IX precursor [Homo sapiens] 32 0.43
gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens] 32 0.43
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.56
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 32 0.56
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 32 0.56
gi|149944526 additional sex combs like 3 [Homo sapiens] 32 0.56
gi|55956788 nucleolin [Homo sapiens] 32 0.73
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 31 0.96
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 0.96
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 31 0.96
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.96
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 31 1.3
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 1.3
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 31 1.3
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 31 1.3
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 31 1.3
gi|122937416 hypothetical protein LOC85452 [Homo sapiens] 30 1.6
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 30 2.1
>gi|44889483 cerebellar degeneration-related protein 1, 34kDa [Homo
sapiens]
Length = 262
Score = 560 bits (1442), Expect = e-160
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED 60
MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED
Sbjct: 1 MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED 60
Query: 61 TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED 120
TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED
Sbjct: 61 TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED 120
Query: 121 KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK 180
KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK
Sbjct: 121 KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK 180
Query: 181 TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF 240
TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF
Sbjct: 181 TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF 240
Query: 241 WKTLIDWKTWISFWKTLIDWKI 262
WKTLIDWKTWISFWKTLIDWKI
Sbjct: 241 WKTLIDWKTWISFWKTLIDWKI 262
>gi|210147567 hypothetical protein LOC220081 [Homo sapiens]
Length = 696
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/131 (26%), Positives = 63/131 (48%)
Query: 4 LEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDF 63
LED ++LE+ LE+ L L++ L LE+ +E LE+ + +E+ ++
Sbjct: 56 LEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEY 115
Query: 64 LEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDF 123
L + E + ++ LE+ + L LE D +E+ D+L +LE + K +
Sbjct: 116 LGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSY 175
Query: 124 LEDMDSLEDLE 134
LE+ +LE E
Sbjct: 176 LEEEKALEKEE 186
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/138 (20%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 22 LEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDF 81
L++ L ++ P + LED +E+ LE+ + L ++L++ ++ + E++++
Sbjct: 38 LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97
Query: 82 LEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFL------EDMDSLEDLEA 135
LE LE+ +E+ + L +LE+ ++L + E++++L E D +E+++
Sbjct: 98 LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157
Query: 136 IGRCGFSGRHGFFGRRRF 153
+G+ + + G++ +
Sbjct: 158 LGKKAYLEEEEYLGKKSY 175
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/138 (20%), Positives = 70/138 (50%)
Query: 34 LEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMAL 93
L++ S ++ + LED + LE+ + LE+ ++ + +++++L + LE+
Sbjct: 38 LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97
Query: 94 LEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRF 153
LE LE+ +++E+ ++L E++++L + LE+ E +G+ G+ + + +
Sbjct: 98 LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157
Query: 154 SGRPKLSGRLGLLGRRGF 171
G+ LG++ +
Sbjct: 158 LGKKAYLEEEEYLGKKSY 175
Score = 49.7 bits (117), Expect = 3e-06
Identities = 29/121 (23%), Positives = 62/121 (51%)
Query: 10 LEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDF 69
L++ L ++ P + LED LE+ LE+ + L++ + L + LE+ ++
Sbjct: 38 LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97
Query: 70 SEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDS 129
E E+++++E+ + L LE+ + L + LE+ ++L E +D++E++D
Sbjct: 98 LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157
Query: 130 L 130
L
Sbjct: 158 L 158
Score = 48.9 bits (115), Expect = 4e-06
Identities = 34/135 (25%), Positives = 65/135 (48%)
Query: 4 LEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDF 63
L++ ++ P + LED LE+ LE+ L +++ L + LE+ ++
Sbjct: 38 LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97
Query: 64 LEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDF 123
LE + E + E++++L LE+ L + LE+ ++L +LE D E+ D+
Sbjct: 98 LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157
Query: 124 LEDMDSLEDLEAIGR 138
L LE+ E +G+
Sbjct: 158 LGKKAYLEEEEYLGK 172
Score = 48.9 bits (115), Expect = 4e-06
Identities = 33/132 (25%), Positives = 65/132 (49%)
Query: 3 WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
+L ++L++ L LE+ LE LE+ +E+ + LE+ + L +
Sbjct: 73 YLGKEEYLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEE 132
Query: 63 FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
LE+ ++ E +D++E++D L A LE+ + L +LE+ LE + E+++
Sbjct: 133 HLEEEEYLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEE 192
Query: 123 FLEDMDSLEDLE 134
LE ++L+ E
Sbjct: 193 ALEKEENLDGKE 204
Score = 43.9 bits (102), Expect = 1e-04
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 3 WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
+LE +LE+ +E+ L LE+ L LE+ + LE D +E+ D
Sbjct: 97 YLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVD 156
Query: 63 FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDK 121
+L + E + K +LE+ +LE LE+ + LE + L+ + L L+E K
Sbjct: 157 YLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEENLDGKENLYKKYLKEPK 215
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 3 WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
+L + LE+ LE LE+ +E+ L LE+ + LE+ + L
Sbjct: 85 YLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEG 144
Query: 63 FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
+LE D+ E +D K +LE+ + L + LE+ LE + LE+ + LE + + K+
Sbjct: 145 YLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEENLDGKE 204
Query: 123 FL 124
L
Sbjct: 205 NL 206
Score = 41.2 bits (95), Expect = 0.001
Identities = 32/128 (25%), Positives = 59/128 (46%)
Query: 3 WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
+L++ ++L LE+ LE LE+ +E+ L +E+ L + LE+ +
Sbjct: 79 YLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEE 138
Query: 63 FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
+L + E D E+ D+L LE+ L LE+ LE + LE + E ++
Sbjct: 139 YLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEE 198
Query: 123 FLEDMDSL 130
L+ ++L
Sbjct: 199 NLDGKENL 206
Score = 34.3 bits (77), Expect = 0.11
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 76 REDKDFLEDMDSLEDMALLE-DVDLLEDTDFLEDPDFLEAIDL----------------- 117
+ED + D +SL+D + + + LED ++LE+ + LE +
Sbjct: 31 KEDTEVELDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEE 90
Query: 118 -REDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
E++++LE LE+ E I + G+ G+ + G+ + LG+ G+ +
Sbjct: 91 HLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEK-- 148
Query: 177 GYWKTWIFWKTWIFWKTWIFRKTYIGWKTWI 207
+ +I ++ K ++ + Y+G K+++
Sbjct: 149 ---EDYIEEVDYLGKKAYLEEEEYLGKKSYL 176
>gi|21361759 myotubularin related protein 8 [Homo sapiens]
Length = 704
Score = 35.0 bits (79), Expect = 0.066
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 112 LEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGF 171
L AI++ D E M D+ GFS G G S +SG LG+ RGF
Sbjct: 619 LRAINISGDVGISEAMGISGDMCTFEATGFSKDLGICGAMDISEATGISGNLGISEARGF 678
Query: 172 SGRLG 176
SG +G
Sbjct: 679 SGDMG 683
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 42 DINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLE 101
D+ + E M + D+ E T F +DL AMD+ E ++ E D+ +L
Sbjct: 627 DVGISEAMGISGDMCTFEATGFSKDLGICGAMDISEATGISGNLGISEARGFSGDMGILG 686
Query: 102 DT 103
DT
Sbjct: 687 DT 688
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 34.3 bits (77), Expect = 0.11
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 46/166 (27%)
Query: 23 EDVPLLEDVPLLEDTSRLED----------------INLMEDMALLEDVDLLEDT----- 61
ED L D+ LE S++++ L E A LE+++ E+
Sbjct: 169 EDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDND 228
Query: 62 DFLEDLDFSEAMDLRED---------------------KDFLEDMDSLEDMALLEDVDL- 99
+ ED+DF E +D ED KDF + ++S ED+ + D +L
Sbjct: 229 EEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELD 288
Query: 100 --LEDTDFL-EDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFS 142
ED + E+ + L + ED D E+ D+ + E++ R F+
Sbjct: 289 SNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLKRVTFA 334
Score = 31.2 bits (69), Expect = 0.96
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 34/147 (23%)
Query: 17 EDIPLLEDVPLLEDVPLLEDTSRLE--DINLMEDMALLEDVDL-LEDTDFLEDLDFSEAM 73
EDI LL P E+ ED S +E D +ED+ E D+ +D + E + S
Sbjct: 102 EDISLL---PESEEQEREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKS 158
Query: 74 DLR-------EDKDFLEDMDSLEDMALLE--------DVDLLEDTDFL--EDPDFLEAID 116
DLR ED D D+ LE + ++ + +++D F E +LE I+
Sbjct: 159 DLRKSPVFSDEDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIE 218
Query: 117 LREDK-----------DFLEDMDSLED 132
E++ DF ED+DS ED
Sbjct: 219 KEEERKDDNDEEEEDIDFFEDIDSDED 245
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 34.3 bits (77), Expect = 0.11
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 45 LMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLE-DT 103
L ED+ ++ E+ + E+ + E + E++DF E+ + E+ E+ + E +
Sbjct: 874 LEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEE 933
Query: 104 DFLEDPDFLEAIDLREDKDFLEDMDSLEDLE 134
+F E+ LE + ED++ E+++ +EDLE
Sbjct: 934 EFEEEEGELEEEEEEEDEEEEEELEEVEDLE 964
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.25
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GF G G FG G P L+G+ G G++G GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 33.1 bits (74), Expect = 0.25
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GF G G FG G P L+G+ G G++G GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 33.1 bits (74), Expect = 0.25
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GF G G FG G P L+G+ G G++G GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340
>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
Length = 1395
Score = 33.1 bits (74), Expect = 0.25
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 5 EDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFL 64
E+ +L++ P +ED L+ L+ S E+++L+E + L++ +D +
Sbjct: 149 EEASLFRKPLVLKEEPTIEDETLINKSLSLKKCSNHEEVSLLEKLQPLQEESDSDDAFVI 208
Query: 65 EDLDF------------SEAMDLREDKDFLEDMDSLEDMAL-LEDVDLLEDTDFLEDPDF 111
E + F + + L++ + S ++ +L ++DV++ ED+ F+E F
Sbjct: 209 EPMTFKKTHKTEEAAITKKTLSLKKKMCASQRKQSCQEESLAVQDVNMEEDSFFMESMSF 268
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/87 (19%), Positives = 38/87 (43%)
Query: 19 IPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLRED 78
+P + + PL+ D+ T E+ +L +L++ +ED + + E+
Sbjct: 127 VPNIMEKPLILDISTTSKTPNTEEASLFRKPLVLKEEPTIEDETLINKSLSLKKCSNHEE 186
Query: 79 KDFLEDMDSLEDMALLEDVDLLEDTDF 105
LE + L++ + +D ++E F
Sbjct: 187 VSLLEKLQPLQEESDSDDAFVIEPMTF 213
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 32.7 bits (73), Expect = 0.33
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ G G HG G R G P + G +G G G G +G
Sbjct: 722 GQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMG 761
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G GF G +G P G+ GL+G GF G G
Sbjct: 551 GAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAG 590
Score = 28.9 bits (63), Expect = 4.8
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG-GY 178
G G GR G G GRP + G GL GR G G G GY
Sbjct: 843 GLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGY 885
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.7 bits (73), Expect = 0.33
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ G +GR+G G + +G P L GR G G +G GR G
Sbjct: 316 GQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAG 355
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G GR G G SG P + G G+ G RG +G G
Sbjct: 346 GEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRG 385
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.3 bits (72), Expect = 0.43
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G CG G G G GRP L+G G +G G G+ G
Sbjct: 2632 GACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSG 2671
>gi|169636420 carbonic anhydrase IX precursor [Homo sapiens]
Length = 459
Score = 32.3 bits (72), Expect = 0.43
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 5 EDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLE 59
ED+ ED P ED P ED+P ED+P ED ++ + E LED+ +E
Sbjct: 63 EDLPSEEDSPREEDPPGEEDLPGEEDLPGEEDLPEVKPKSEEEGSLKLEDLPTVE 117
Score = 32.0 bits (71), Expect = 0.56
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 11 EDVPL-LEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDF 69
ED PL ED+P ED P ED P ED ED+ ED+ ++ E + LEDL
Sbjct: 56 EDDPLGEEDLPSEEDSPREEDPPGEEDLPGEEDLPGEEDLPEVKPKSEEEGSLKLEDLPT 115
Query: 70 SEA 72
EA
Sbjct: 116 VEA 118
>gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens]
Length = 751
Score = 32.3 bits (72), Expect = 0.43
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 6 DVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLE 65
D+DF V L+ + + VP++ L+ +ED ++ ++ + D L +D F+E
Sbjct: 88 DLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIE 147
Query: 66 DLDFSEAMDLREDKD--FLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLE-----AIDLR 118
+L + + D++ F+ D +E + L + +D D +DP+ E D R
Sbjct: 148 ELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHR 207
Query: 119 EDKD 122
+DK+
Sbjct: 208 DDKE 211
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.0 bits (71), Expect = 0.56
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKT 181
A G+ G G+ GF+G G P +G+ G G +G +G GG K+
Sbjct: 1348 AAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKS 1394
Score = 31.6 bits (70), Expect = 0.73
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 130 LEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
+E A GR G G+ G GR G P L G++G GR+G G G
Sbjct: 1466 MEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRG 1512
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G G G+ G P +G GL+G GF G+ G
Sbjct: 1210 GPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTG 1249
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 32.0 bits (71), Expect = 0.56
Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 31/88 (35%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIF 196
G GF+G G G F G + G GL G RG G G
Sbjct: 890 GDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDG-------------------- 929
Query: 197 RKTYIGWKTWIFSGRCGLTGRPGFGGRR 224
F G GL GRPGF G +
Sbjct: 930 -----------FQGMPGLKGRPGFPGSK 946
Score = 30.0 bits (66), Expect = 2.1
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIFRKT 199
G G+ G G + ++G P L G GL GR+G G G T K + +
Sbjct: 58 GGRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGP--------KGDVGARG 109
Query: 200 YIGWKTWIFSGRCGLTGRPGFGGRR 224
G F G G+ G PG GG R
Sbjct: 110 VSG-----FPGADGIPGHPGQGGPR 129
Score = 29.6 bits (65), Expect = 2.8
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 31/88 (35%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIF 196
G G G G G F G P L GR G G +G +G G
Sbjct: 914 GTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFG-------------------- 953
Query: 197 RKTYIGWKTWIFSGRCGLTGRPGFGGRR 224
G GL G PGF G R
Sbjct: 954 -----------IPGLKGLAGEPGFKGSR 970
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G GR GF G + +G + G GL G GF G G
Sbjct: 932 GMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G +G GF G R G P GR GL G G +G G
Sbjct: 1055 GPPGITGFPGFIGSRGDKGAP---GRAGLYGEIGATGDFG 1091
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 32.0 bits (71), Expect = 0.56
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 55 VDLLEDTDFLEDLDFSE---AMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDF 111
VD +D+D ED+D E + ED D D D ++ E+ + +E+ D +D D
Sbjct: 87 VDECDDSDGTEDMDEKEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDEDDDEDG 146
Query: 112 LEAIDLREDKDFLEDMDSLEDLE 134
+ D E+++ E+ + E+ E
Sbjct: 147 EDVEDEEEEEEEEEEEEEEEENE 169
Score = 28.9 bits (63), Expect = 4.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 70 SEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDS 129
S ++D +D D EDMD E+ E + ED D D D + RE+++ +E+ D
Sbjct: 84 SSSVDECDDSDGTEDMDEKEED---EGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDE 140
Query: 130 LED 132
+D
Sbjct: 141 DDD 143
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 32.0 bits (71), Expect = 0.56
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 10 LEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDL 67
+ + L+ ++PL + + ++PL +TS + D+ L + + + + L +T F+ L
Sbjct: 689 ISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETTFVSSL 746
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 4 LEDVDFLEDVPL------LEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDL 57
+ + + ++PL + ++PL + + D+PL +TS + + L + + + L
Sbjct: 689 ISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETTFVSSLPL 748
Query: 58 LEDTDFLEDLDFSEAMDLREDK 79
+T + + +E M ++ K
Sbjct: 749 PSETSPISNSSINERMAHQQRK 770
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 31.6 bits (70), Expect = 0.73
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 104 DFLEDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGR---PKLS 160
DF + D A + ED + + +L+ + G GF GR G GR F GR
Sbjct: 616 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGG--GRGGFGGRGGGRGGR 673
Query: 161 GRLGLLGRRGFSGRLGGY 178
G G GR GF GR GG+
Sbjct: 674 GGFGGRGRGGFGGR-GGF 690
Score = 28.5 bits (62), Expect = 6.2
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 59 EDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMAL--LEDVDLLEDTDFLEDPDFLEAID 116
ED+D ED D E D +D+D ED D +E A+ ED D +D D + D
Sbjct: 143 EDSDEEEDDDSEE--DEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDD 200
Query: 117 LREDKDFLEDMDS 129
ED E M++
Sbjct: 201 DEEDDSEEEAMET 213
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 31.2 bits (69), Expect = 0.96
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GR G G GF G + G+ +SG +GL G GF G G
Sbjct: 1097 GRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAG 1136
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGY 178
A GR G G G G + F+G LSG L G RGF G LG Y
Sbjct: 48 ARGRPGPIGIQGPTGPQGFTGSTGLSG---LKGERGFPGLLGPY 88
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G +G GF G G + G+ GLLG +G G G
Sbjct: 765 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPG 804
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 31.2 bits (69), Expect = 0.96
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GR GF GR G G G P GR G +G +GF G +G
Sbjct: 964 GRKGFPGRPGLDG---VKGEPGDPGRPGPVGEQGFMGFIG 1000
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G +G G G F G L G+LG G+RG GR G
Sbjct: 1475 GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTG 1514
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
A G G G+ G GRR G L G G++GR+G G G
Sbjct: 1401 AEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAG 1442
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 31.2 bits (69), Expect = 0.96
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
GR G G GF G + G+ +SG +GL G GF G G
Sbjct: 1096 GRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAG 1135
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGY 178
A GR G G G G + F+G LSG L G RGF G LG Y
Sbjct: 47 ARGRPGPIGIQGPTGPQGFTGSTGLSG---LKGERGFPGLLGPY 87
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G +G GF G G + G+ GLLG +G G G
Sbjct: 764 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPG 803
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 31.2 bits (69), Expect = 0.96
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G+ G G R F G+P L G G G RG G G
Sbjct: 954 GPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPG 993
Score = 30.0 bits (66), Expect = 2.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
IG+ G G GF G+ G P +G GL G G G G
Sbjct: 959 IGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQG 999
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
A G G G G G G P + G+ G GR+GF G G
Sbjct: 616 AQGFIGSPGEAGQLGPEGERGIPGIRGKKGFKGRQGFPGDFG 657
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
IG G+ GR G G G P G G +G G +G+LG
Sbjct: 593 IGSPGYPGRQGLAGPE---GNPGPKGAQGFIGSPGEAGQLG 630
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G G G SG+P + G GLLG +G G G
Sbjct: 1258 GERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHG 1297
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G G G + G P L G G G GF+G +G
Sbjct: 555 GLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNIG 594
Score = 28.1 bits (61), Expect = 8.1
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 137 GRCGFSGRHGF---FGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ GF GR GF FG R +G G +G G GF G G
Sbjct: 642 GKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPPGFPGLRG 684
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
+G G +GR G G++ G P L G LG +G+ G GR G
Sbjct: 1614 MGAKGSTGRPGLLGKK---GEPGLPGDLGPVGQTGQRGRQG 1651
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G GR G G R SG P G G LG G G G
Sbjct: 1552 GSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQG 1588
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRL------GLLGRRGFSGRLG 176
G+ G SGR G G R G P + G G+ G RGF GR G
Sbjct: 228 GKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273
Score = 28.1 bits (61), Expect = 8.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 140 GFSGRHGFFGR---RRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G GF GR + +G P L G GL G G G +G
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG 300
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ G SG+ G G G P L G+ GL+G G G +G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030
Score = 28.5 bits (62), Expect = 6.2
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G GF G G G R F G P GR GL G G G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ G SG+ G G G P L G+ GL+G G G +G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030
Score = 28.5 bits (62), Expect = 6.2
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G GF G G G R F G P GR GL G G G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G+ G SG+ G G G P L G+ GL+G G G +G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030
Score = 28.5 bits (62), Expect = 6.2
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G GF G G G R F G P GR GL G G G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802
>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
Length = 762
Score = 30.4 bits (67), Expect = 1.6
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 41 EDINLMEDMALLEDVDLLEDT-DFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDL 99
+D +L+ + LL D LLED D LED +F L+E +D ++ S L D D
Sbjct: 3 DDGSLLPEDELLADALLLEDERDELEDPEFDIKCLLQEAEDDVDPGHSSSVKELDTDADK 62
Query: 100 LEDTDFLEDPDFLEAIDLREDKDFLEDMDSLEDL 133
L+ D +A LR++ L+ M ++L
Sbjct: 63 LKKK---TAEDRTQAFHLRQNLSALDKMHEEQEL 93
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.0 bits (66), Expect = 2.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
+G G G G G R F G+ L+G G G RG SG G
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 540
Score = 28.1 bits (61), Expect = 8.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G G G + +G P G GL G RG +GR G
Sbjct: 528 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPG 567
Score = 28.1 bits (61), Expect = 8.1
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
G G G G G R F+G L G G G +G SG G
Sbjct: 1119 GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAG 1158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.146 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,394,576
Number of Sequences: 37866
Number of extensions: 566490
Number of successful extensions: 3172
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 1197
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.