Guide to the Human Genome
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Name: FLJ32682 Sequence: fasta or formatted (696aa) NCBI GI: 210147567
Description:

hypothetical protein LOC220081

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         28           2
 C cysteine            0.4          3           1
 D aspartate           4.2         29           1
 E glutamate          17.0        118           4
 F phenylalanine       2.9         20           1
 G glycine             3.7         26           1
 H histidine           1.7         12           2
 I isoleucine          4.9         34           2
 K lysine             10.1         70           3
 L leucine            11.5         80           3
 M methionine          1.7         12           1
 N asparagine          4.6         32           2
 P proline             4.5         31           2
 Q glutamine           3.9         27           2
 R arginine            2.9         20           3
 S serine              6.3         44           2
 T threonine           5.6         39           3
 V valine              3.4         24           2
 W tryptophan          1.3          9           2
 Y tyrosine            5.5         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC220081 
C3orf44               0.050   hypothetical protein LOC131831 
TCHH                  0.036   trichohyalin 
WDR87                 0.031   NYD-SP11 protein 
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 2 ...
LOC727832             0.031   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RPGR                  0.029   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC100133220          0.029   PREDICTED: hypothetical protein 
LOC283767             0.028   golgi autoantigen, golgin subfamily a-like 
PELP1                 0.028   proline, glutamic acid and leucine rich protein 1 [...
LOC728636             0.027   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC283685             0.027   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.027   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC440295             0.027   hypothetical protein LOC440295 
LOC100133758          0.026   PREDICTED: hypothetical protein, partial 
LOC647042             0.026   PREDICTED: hypothetical protein isoform 2 
CENPB                 0.025   centromere protein B 
CCNB3                 0.025   cyclin B3 isoform 3 
MYH9                  0.024   myosin, heavy polypeptide 9, non-muscle 
LOC651807             0.024   PREDICTED: hypothetical protein 
LOC647042             0.024   PREDICTED: hypothetical protein isoform 1 
TTN                   0.023   titin isoform N2-A 
LOC645202             0.023   PREDICTED: hypothetical protein LOC645202 
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
C12orf12              0.023   hypothetical protein LOC196477 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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