Guide to the Human Genome
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Name: MYO1B Sequence: fasta or formatted (1078aa) NCBI GI: 44889481
Description:

myosin IB isoform 2

Referenced in:

Myosin

Other entries for this name:
alt prot [1136aa] myosin IB isoform 1
alt prot [1136aa] myosin IB isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         68           2
 C cysteine            1.7         18           1
 D aspartate           4.4         47           2
 E glutamate           7.8         84           2
 F phenylalanine       5.0         54           2
 G glycine             4.3         46           2
 H histidine           1.9         20           1
 I isoleucine          6.1         66           3
 K lysine              9.4        101           2
 L leucine             9.8        106           3
 M methionine          1.8         19           1
 N asparagine          6.0         65           3
 P proline             3.0         32           2
 Q glutamine           4.8         52           2
 R arginine            6.1         66           2
 S serine              6.5         70           2
 T threonine           3.9         42           2
 V valine              6.1         66           2
 W tryptophan          1.0         11           1
 Y tyrosine            4.2         45           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IB isoform 2 
MYO1B                 0.964   myosin IB isoform 1 
MYO1B                 0.964   myosin IB isoform 1 
MYO1A                 0.575   myosin IA 
MYO1C                 0.365   myosin IC isoform b 
MYO1C                 0.365   myosin IC isoform a 
MYO1C                 0.365   myosin IC isoform c 
MYO1H                 0.344   myosin 1H 
MYO1D                 0.325   myosin ID 
MYO1G                 0.292   myosin IG 
MYO1E                 0.281   myosin IE 
MYO1F                 0.275   myosin IF 
MYO7A                 0.230   myosin VIIA isoform 2 
MYO7A                 0.230   myosin VIIA isoform 3 
MYO7A                 0.230   myosin VIIA isoform 1 
MYO5A                 0.228   myosin VA isoform 2 
MYO5A                 0.228   myosin VA isoform 1 
MYO15A                0.224   myosin XV 
MYO7B                 0.223   myosin VIIB 
MYO5B                 0.221   myosin VB 
MYO5C                 0.220   myosin VC 
MYO10                 0.215   myosin X 
MYH10                 0.215   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.211   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.211   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH11                 0.210   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.210   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH9                  0.207   myosin, heavy polypeptide 9, non-muscle 
MYH7                  0.202   myosin, heavy chain 7, cardiac muscle, beta 
MYH14                 0.200   myosin, heavy chain 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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