Guide to the Human Genome
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Name: MYO1F Sequence: fasta or formatted (1098aa) NCBI GI: 27544941
Description:

myosin IF

Referenced in:

Myosin
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         61           2
 C cysteine            1.2         13           1
 D aspartate           5.1         56           2
 E glutamate           7.0         77           2
 F phenylalanine       4.8         53           2
 G glycine             8.4         92           4
 H histidine           1.7         19           2
 I isoleucine          4.9         54           2
 K lysine              6.2         68           3
 L leucine             8.4         92           2
 M methionine          2.4         26           1
 N asparagine          4.4         48           3
 P proline             5.2         57           2
 Q glutamine           5.5         60           2
 R arginine            8.1         89           3
 S serine              5.9         65           2
 T threonine           4.1         45           1
 V valine              6.6         73           2
 W tryptophan          1.0         11           2
 Y tyrosine            3.6         39           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IF 
MYO1E                 0.719   myosin IE 
MYO1C                 0.267   myosin IC isoform b 
MYO1C                 0.267   myosin IC isoform a 
MYO1C                 0.267   myosin IC isoform c 
MYO1B                 0.267   myosin IB isoform 1 
MYO1B                 0.267   myosin IB isoform 2 
MYO1B                 0.267   myosin IB isoform 1 
MYO1H                 0.260   myosin 1H 
MYO1A                 0.248   myosin IA 
MYO1D                 0.234   myosin ID 
MYO1G                 0.219   myosin IG 
MYO7A                 0.207   myosin VIIA isoform 2 
MYO7A                 0.207   myosin VIIA isoform 3 
MYO7A                 0.207   myosin VIIA isoform 1 
MYO5C                 0.204   myosin VC 
MYO7B                 0.204   myosin VIIB 
MYO15A                0.199   myosin XV 
MYO10                 0.197   myosin X 
MYO5B                 0.197   myosin VB 
MYO5A                 0.196   myosin VA isoform 2 
MYO5A                 0.196   myosin VA isoform 1 
MYH9                  0.186   myosin, heavy polypeptide 9, non-muscle 
MYH7                  0.185   myosin, heavy chain 7, cardiac muscle, beta 
MYH10                 0.183   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.180   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.180   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH6                  0.179   myosin heavy chain 6 
MYH14                 0.179   myosin, heavy chain 14 isoform 2 
MYO6                  0.179   myosin VI 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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