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Search of human proteins with 42542392
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
(1054 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 2104 0.0
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 47 7e-05
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 47 1e-04
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 47 1e-04
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 45 4e-04
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 45 4e-04
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 45 4e-04
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 45 4e-04
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 45 5e-04
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 43 0.001
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 43 0.002
gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens] 43 0.002
gi|57634514 SPANX-N2 protein [Homo sapiens] 41 0.005
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 41 0.005
gi|55956788 nucleolin [Homo sapiens] 41 0.007
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 41 0.007
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 40 0.009
gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] 40 0.012
gi|33188449 serine/arginine-rich protein-specific kinase 2 isofo... 40 0.012
gi|33188447 serine/arginine-rich protein-specific kinase 2 isofo... 40 0.012
gi|115529449 upstream binding transcription factor, RNA polymera... 40 0.012
gi|115529451 upstream binding transcription factor, RNA polymera... 40 0.012
gi|7657671 upstream binding transcription factor, RNA polymerase... 40 0.012
gi|16445033 ACRC protein [Homo sapiens] 40 0.012
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 40 0.012
gi|24415404 MDN1, midasin homolog [Homo sapiens] 40 0.015
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 39 0.020
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 39 0.020
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 39 0.020
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 38 0.044
>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
Length = 1054
Score = 2104 bits (5452), Expect = 0.0
Identities = 1054/1054 (100%), Positives = 1054/1054 (100%)
Query: 1 MAAVKEPLEFHAKRPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLAT 60
MAAVKEPLEFHAKRPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLAT
Sbjct: 1 MAAVKEPLEFHAKRPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLAT 60
Query: 61 LDENEEVIDGGKKGAIDDLQQGELEAFIQNLNLAKYTKASLVEEDEPAEKENSSKKEVKI 120
LDENEEVIDGGKKGAIDDLQQGELEAFIQNLNLAKYTKASLVEEDEPAEKENSSKKEVKI
Sbjct: 61 LDENEEVIDGGKKGAIDDLQQGELEAFIQNLNLAKYTKASLVEEDEPAEKENSSKKEVKI 120
Query: 121 PKINNKNTAESQRTSVNKVKNKNRPEPHSDENGSTTPKVKKDKQNIFEFFERQTLLLRPG 180
PKINNKNTAESQRTSVNKVKNKNRPEPHSDENGSTTPKVKKDKQNIFEFFERQTLLLRPG
Sbjct: 121 PKINNKNTAESQRTSVNKVKNKNRPEPHSDENGSTTPKVKKDKQNIFEFFERQTLLLRPG 180
Query: 181 GKWYDLEYSNEYSLKPQPQDVVSKYKTLAQKLYQHEINLFKSKTNSQKGASSTWMKAIVS 240
GKWYDLEYSNEYSLKPQPQDVVSKYKTLAQKLYQHEINLFKSKTNSQKGASSTWMKAIVS
Sbjct: 181 GKWYDLEYSNEYSLKPQPQDVVSKYKTLAQKLYQHEINLFKSKTNSQKGASSTWMKAIVS 240
Query: 241 SGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSKQQCLMALDTFKELLITDLLPD 300
SGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSKQQCLMALDTFKELLITDLLPD
Sbjct: 241 SGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSKQQCLMALDTFKELLITDLLPD 300
Query: 301 NRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFEHQLKHLVAEFVQVLETLSHDTLVT 360
NRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFEHQLKHLVAEFVQVLETLSHDTLVT
Sbjct: 301 NRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFEHQLKHLVAEFVQVLETLSHDTLVT 360
Query: 361 TKTRALTVAHELLCNKPEEEKALLVQVVNKLGDPQNRIATKASHLLETLLCKHPNMKGVV 420
TKTRALTVAHELLCNKPEEEKALLVQVVNKLGDPQNRIATKASHLLETLLCKHPNMKGVV
Sbjct: 361 TKTRALTVAHELLCNKPEEEKALLVQVVNKLGDPQNRIATKASHLLETLLCKHPNMKGVV 420
Query: 421 SGEVERLLFRSNISSKAQYYAICFLNQMALSHEESELANKLITVYFCFFRTCVKKKDVES 480
SGEVERLLFRSNISSKAQYYAICFLNQMALSHEESELANKLITVYFCFFRTCVKKKDVES
Sbjct: 421 SGEVERLLFRSNISSKAQYYAICFLNQMALSHEESELANKLITVYFCFFRTCVKKKDVES 480
Query: 481 KMLSALLTGVNRAYPYSQTGDDKVREQIDTLFKVLHIVNFNTSVQALMLLFQVMNSQQTI 540
KMLSALLTGVNRAYPYSQTGDDKVREQIDTLFKVLHIVNFNTSVQALMLLFQVMNSQQTI
Sbjct: 481 KMLSALLTGVNRAYPYSQTGDDKVREQIDTLFKVLHIVNFNTSVQALMLLFQVMNSQQTI 540
Query: 541 SDRYYTALYRKMLDPGLMTCSKQAMFLNLVYKSLKADIVLRRVKAFVKRLLQVTCQQMPP 600
SDRYYTALYRKMLDPGLMTCSKQAMFLNLVYKSLKADIVLRRVKAFVKRLLQVTCQQMPP
Sbjct: 541 SDRYYTALYRKMLDPGLMTCSKQAMFLNLVYKSLKADIVLRRVKAFVKRLLQVTCQQMPP 600
Query: 601 FICGALYLVSEILKAKPGLRSQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVKKL 660
FICGALYLVSEILKAKPGLRSQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVKKL
Sbjct: 601 FICGALYLVSEILKAKPGLRSQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVKKL 660
Query: 661 ETEETVPETDVETKKPEVASWVHFDNLKGGKQLNKYDPFSRNPLFCGAENTSLWELKKLS 720
ETEETVPETDVETKKPEVASWVHFDNLKGGKQLNKYDPFSRNPLFCGAENTSLWELKKLS
Sbjct: 661 ETEETVPETDVETKKPEVASWVHFDNLKGGKQLNKYDPFSRNPLFCGAENTSLWELKKLS 720
Query: 721 VHFHPSVALFAKTILQGNYIQYSGDPLQDFTLMRFLDRFVYRNPKPHKGKENTDSVVMQP 780
VHFHPSVALFAKTILQGNYIQYSGDPLQDFTLMRFLDRFVYRNPKPHKGKENTDSVVMQP
Sbjct: 721 VHFHPSVALFAKTILQGNYIQYSGDPLQDFTLMRFLDRFVYRNPKPHKGKENTDSVVMQP 780
Query: 781 KRKHFIKDIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVD 840
KRKHFIKDIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVD
Sbjct: 781 KRKHFIKDIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVD 840
Query: 841 DEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDE 900
DEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDE
Sbjct: 841 DEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDE 900
Query: 901 VSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSF 960
VSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSF
Sbjct: 901 VSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSF 960
Query: 961 QGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGMNAMANKDNASLKQLRWEAERD 1020
QGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGMNAMANKDNASLKQLRWEAERD
Sbjct: 961 QGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGMNAMANKDNASLKQLRWEAERD 1020
Query: 1021 DWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK 1054
DWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK
Sbjct: 1021 DWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK 1054
>gi|195976782 Paf1/RNA polymerase II complex component [Homo sapiens]
Length = 710
Score = 47.4 bits (111), Expect = 7e-05
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 35/209 (16%)
Query: 870 VKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDE- 928
VKKR KG D + GSD+ NLD + +SL + E + D E
Sbjct: 42 VKKR-KGRVVIDSDTEDSGSDE---NLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSET 97
Query: 929 SESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLN--------DSSLFVSAE 980
S+S E S + KK K + + +G KK+ N DSS SA
Sbjct: 98 SDSDDEWTFGSNKNKKKGKARKIEK-------KGTMKKQANKTASSGSSDKDSSAESSAP 150
Query: 981 EFGHLLDENMGSK---------------FDNIGMNAMANKDNASLKQLRWEAERDDWLHN 1025
E G + D + S D G + M ++++ + + E ER+ L N
Sbjct: 151 EEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFN 210
Query: 1026 RDAKSIIKKKKHFKKKRIKTTQKTKKQRK 1054
R K + K++ KK++KT +K +K+ K
Sbjct: 211 RIEKREVLKRRFEIKKKLKTAKKKEKKEK 239
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 46.6 bits (109), Expect = 1e-04
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 766 PHKGKENTDSVVMQPKRKHFIKDIRH--LPVNSKEFLAKEESQIPVDEVFFHRYYKKVAV 823
P +G E DS + K+K D L S++ L KE + +
Sbjct: 490 PVRGSEE-DSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE------------EVGPT 536
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLD 883
KE ++ D+++ES ED +++ E+ + ++N D+D G+ K+ + D L+
Sbjct: 537 KESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEK---DLDEEGSEKELHENVLDKELE 593
Query: 884 E-DSEGS---DDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHS 939
E DSE S DD + D+E S D E+ E +E+ T+ V DDES+ + E
Sbjct: 594 ENDSENSEFEDDGSEKVLDEEGSEREFD-EDSDEKEEEEDTYEKVFDDESDEKEDEEYAD 652
Query: 940 KVSTKKSKRKGTD 952
+ + + +K +
Sbjct: 653 EKGLEAADKKAEE 665
Score = 43.5 bits (101), Expect = 0.001
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEE-FEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGA 877
+KV +E +R+ DE+S E ++E+ +E++ D D+ D+ KK +G
Sbjct: 608 EKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGD 667
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESV 932
D L E+S+ +DE + D EV DE+ E D+ D +D SE +
Sbjct: 668 ADEKLFEESDDKEDE--DADGKEVEDA---DEKLFEDDDSNEKLFDEEEDSSEKL 717
Score = 34.3 bits (77), Expect = 0.64
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 803 EESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKD 862
+ES DE + + A K+ ++ DADE+ E+ DD+E E+ + GK+
Sbjct: 640 DESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDED-----------ADGKE 688
Query: 863 DMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFM 922
D + K + L ++ E S ++L + D+ +LG E + G +F+
Sbjct: 689 VED--ADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPL-STGSSFI 745
Query: 923 DVLDDESESV 932
DD+ + +
Sbjct: 746 LSSDDDDDDI 755
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 46.6 bits (109), Expect = 1e-04
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 766 PHKGKENTDSVVMQPKRKHFIKDIRH--LPVNSKEFLAKEESQIPVDEVFFHRYYKKVAV 823
P +G E DS + K+K D L S++ L KE + +
Sbjct: 490 PVRGSEE-DSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE------------EVGPT 536
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLD 883
KE ++ D+++ES ED +++ E+ + ++N D+D G+ K+ + D L+
Sbjct: 537 KESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEK---DLDEEGSEKELHENVLDKELE 593
Query: 884 E-DSEGS---DDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHS 939
E DSE S DD + D+E S D E+ E +E+ T+ V DDES+ + E
Sbjct: 594 ENDSENSEFEDDGSEKVLDEEGSEREFD-EDSDEKEEEEDTYEKVFDDESDEKEDEEYAD 652
Query: 940 KVSTKKSKRKGTD 952
+ + + +K +
Sbjct: 653 EKGLEAADKKAEE 665
Score = 43.5 bits (101), Expect = 0.001
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEE-FEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGA 877
+KV +E +R+ DE+S E ++E+ +E++ D D+ D+ KK +G
Sbjct: 608 EKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGD 667
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESV 932
D L E+S+ +DE + D EV DE+ E D+ D +D SE +
Sbjct: 668 ADEKLFEESDDKEDE--DADGKEVEDA---DEKLFEDDDSNEKLFDEEEDSSEKL 717
Score = 34.3 bits (77), Expect = 0.64
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 803 EESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKD 862
+ES DE + + A K+ ++ DADE+ E+ DD+E E+ + GK+
Sbjct: 640 DESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDED-----------ADGKE 688
Query: 863 DMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFM 922
D + K + L ++ E S ++L + D+ +LG E + G +F+
Sbjct: 689 VED--ADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPL-STGSSFI 745
Query: 923 DVLDDESESV 932
DD+ + +
Sbjct: 746 LSSDDDDDDI 755
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 45.1 bits (105), Expect = 4e-04
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEEFEELI----DTFEDDNCFSSGKDDMDFAGNVKKRT 874
KK + KQK D+ E++E ++ E+ ++ + D E++ SS K D NVK +
Sbjct: 184 KKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDET---NVKMES 240
Query: 875 KGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
+G D++ +E DD+ + DD++ L DDE+ AE ED
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLEL-IKDDEKEAEEGED 282
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 45.1 bits (105), Expect = 4e-04
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEEFEELI----DTFEDDNCFSSGKDDMDFAGNVKKRT 874
KK + KQK D+ E++E ++ E+ ++ + D E++ SS K D NVK +
Sbjct: 197 KKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDET---NVKMES 253
Query: 875 KGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
+G D++ +E DD+ + DD++ L DDE+ AE ED
Sbjct: 254 EGGADDSAEEGDLLDDDDNEDRGDDQLEL-IKDDEKEAEEGED 295
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 45.1 bits (105), Expect = 4e-04
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEEFEELI----DTFEDDNCFSSGKDDMDFAGNVKKRT 874
KK + KQK D+ E++E ++ E+ ++ + D E++ SS K D NVK +
Sbjct: 184 KKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDET---NVKMES 240
Query: 875 KGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
+G D++ +E DD+ + DD++ L DDE+ AE ED
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLEL-IKDDEKEAEEGED 282
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 45.1 bits (105), Expect = 4e-04
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEEFEELI----DTFEDDNCFSSGKDDMDFAGNVKKRT 874
KK + KQK D+ E++E ++ E+ ++ + D E++ SS K D NVK +
Sbjct: 197 KKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDET---NVKMES 253
Query: 875 KGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
+G D++ +E DD+ + DD++ L DDE+ AE ED
Sbjct: 254 EGGADDSAEEGDLLDDDDNEDRGDDQLEL-IKDDEKEAEEGED 295
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 44.7 bits (104), Expect = 5e-04
Identities = 25/97 (25%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTF--EDDNCFSSGKD-DMDFAGNVKKRTKGAKDN 880
+E++ D D++ +D+D+ + ++L++ EDDN ++G+D D DF+ + ++ N
Sbjct: 1409 QEEEDDDEDDDDTDDLDELDTDQLLEAELEEDDNNENAGEDGDNDFSPSDEELA-----N 1463
Query: 881 TLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
L+E +G D++ ++ E+ LG D + +++++D
Sbjct: 1464 LLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDD 1500
Score = 37.4 bits (85), Expect = 0.075
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 826 KQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDED 885
+Q+ DE+ ED ++EE EE D +DD+ DD+D D L+ +
Sbjct: 1391 RQRLAEDEDEEEDQEEEEQEEEDDDEDDDD-----TDDLDELDT---------DQLLEAE 1436
Query: 886 SEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEV 937
E DD N +D + S DEE A + E+G D D++S++ E+E+
Sbjct: 1437 LE-EDDNNENAGEDGDNDFSPSDEELANLLEEG---EDGEDEDSDADEEVEL 1484
Score = 31.2 bits (69), Expect = 5.4
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 19 EEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLATLDENEEVIDGGKKGAIDD 78
EE E+ ++E+ED+ + ++ L+E+ D L+ A L+E++ + G+ G D
Sbjct: 1401 EEDQEEEEQEEEDDDEDDDDTDDLDEL------DTDQLLEAELEEDDNNENAGEDGDNDF 1454
Query: 79 LQQGELEAFIQNLNLAKYTKASLVEEDEPAEKENSSKKE 117
E A+L+EE E E E+S E
Sbjct: 1455 SPSDE-------------ELANLLEEGEDGEDEDSDADE 1480
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 43.1 bits (100), Expect = 0.001
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 26/236 (11%)
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTL- 882
+E+ + + +EE E +EE EE E++ G+D + +G ++
Sbjct: 905 EEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEG 964
Query: 883 --DEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSK 940
+E+ EG +E ++E G ++EE E E+ G + + E E E EV +
Sbjct: 965 EGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGE 1024
Query: 941 VSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGMN 1000
V ++ + +G ++ G +G ++K + + EE E K+ G
Sbjct: 1025 VEGEEGEGEGEEE---EGEEEGEEREKEGEGEENRRNREEE------EEEEGKYQETGEE 1075
Query: 1001 AMANKDNASLKQLRWEAERDDWLHNRDAKSIIKKKKH--FKKKRIKTTQKTKKQRK 1054
+D K++ K +K KH ++KK + TQ K+++
Sbjct: 1076 ENERQDGEEYKKV------------SKIKGSVKYGKHKTYQKKSVTNTQGNGKEQR 1119
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 42.7 bits (99), Expect = 0.002
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 809 VDEVFF-----HRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCF------ 857
VD+ FF Y + + +E++K D DEE ED+D F E ID+ ED+
Sbjct: 200 VDDKFFKLSEMEAYLENIEKEEERKDDNDEEE-EDID---FFEDIDSDEDEGGLFGSKKL 255
Query: 858 SSGKDDM-----DFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFA 912
SGK DF V+ + + DS DDE+ + +E+S+ D+++
Sbjct: 256 KSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDEDDDL 315
Query: 913 EVDEDGGTFMDVLDDESESVP---ELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRN 969
+ +ED + L + ++P E E ++ KK+ + F+ R++K N
Sbjct: 316 QENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSFE-------KRQEKMN 368
Query: 970 LNDSSL 975
+SL
Sbjct: 369 EKIASL 374
Score = 38.5 bits (88), Expect = 0.034
Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 48/272 (17%)
Query: 825 EKQKRDADEESI-----EDVDDEEFEELIDTFEDD------------------NCFSSGK 861
E+Q+R+ D I ED++D E EE+ D DD FS
Sbjct: 111 EEQEREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDED 170
Query: 862 DDMDFAGNVKKRTKGAKDNTLDEDSEGS--DDELGNLDDDEVSLGSMDDEEFA-----EV 914
D+DF + ++ ++ + E S DD+ L + E L +++ EE E
Sbjct: 171 SDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEE 230
Query: 915 DEDGGTFMDVLDDESESVPELEVHSKVSTKKSKR--KGTDDFDFAGSFQGPRKKKRNLND 972
+ED F D+ DE E L K+ + KS R K D FD S + N++D
Sbjct: 231 EEDIDFFEDIDSDEDEG--GLFGSKKLKSGKSSRNLKYKDFFDPVES----DEDITNVHD 284
Query: 973 SSLFVS------AEEFGHLLDENMGSKFDNIGMNAMANKDNASLKQLRW----EAERDDW 1022
L + AEE L + + D++ N + SLK++ + +AE +D
Sbjct: 285 DELDSNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDT 344
Query: 1023 LHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK 1054
K+ + K F+K++ K +K K
Sbjct: 345 GVLNVKKNSDEVKSSFEKRQEKMNEKIASLEK 376
Score = 32.0 bits (71), Expect = 3.2
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 8 LEFHAKRPWRPEEAVEDPDEEDED-------NTSEAENGFSLEEVLRLGGTKQDYLMLAT 60
+E + + + EE +D DEE+ED ++ E E G + L+ G + ++
Sbjct: 210 MEAYLENIEKEEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDF 269
Query: 61 LD--ENEEVIDGGKKGAIDDLQQGE--LEAFIQNLNLAKYTKASLVEEDEPAEKENSSKK 116
D E++E I +D ++ + E + L++++ + ++E+E ++ S K
Sbjct: 270 FDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLK 329
Query: 117 EVKIPKINNKNTAESQRTSVNKVKNKNRPEPHSDENGSTTPKVKKDKQNIFEFFERQTLL 176
V + AE++ T V VK +SDE S+ K ++ E++ L
Sbjct: 330 RVTFAL---PDDAETEDTGVLNVKK------NSDEVKSSFEKRQEKMNEKIASLEKELLE 380
Query: 177 LRP 179
+P
Sbjct: 381 KKP 383
>gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens]
Length = 800
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 703 PLFCGAENTSLWELKKLSVHFHPSVALFAKTILQGNYIQYSG 744
P +C A+NT+LWEL L H+HP V FA ++ G + SG
Sbjct: 680 PEYCNAQNTALWELHALRRHYHPIVQRFAAHLIAGAPSEGSG 721
Score = 34.3 bits (77), Expect = 0.64
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 35/212 (16%)
Query: 449 ALSHEESELANKLIT-----VYFCFFRTCVKKKDVESKMLSALLTGVNRAYPYSQTGDDK 503
A + E +E KL T V+ +FR + KK S +L A+L G+ +
Sbjct: 478 AEASESTEKKLKLHTETLNIVFVTYFR--ILKKAQRSPLLPAVLEGLAKFAHLINV---- 531
Query: 504 VREQIDTLFKVLHIV------NFNTSVQALMLLFQVMNSQQTISD----RYYTALYRKM- 552
E D L VLH + ++ S+ + F +++ Q + + ++YT LY+ +
Sbjct: 532 --EFFDDLLVVLHTLIESGDLSYQESLHCVQTAFHILSGQGDVLNIDPLKFYTHLYKTLF 589
Query: 553 -LDPGLMTCSKQAMF--LNLVYKSLKADIVLRRVKAFVKRLLQVTCQQMPPFICGALYLV 609
L G + + L+++ + + +R AF+KRL + +P G L
Sbjct: 590 KLHAGATNEGVEIVLQCLDVMLTKRRKQVSQQRALAFIKRLCTLALHVLPNSSIGILATT 649
Query: 610 SEILKAKPGLRSQLDDH--------PESDDEE 633
++ P LD PE D+ E
Sbjct: 650 RILMHTFPKTDLLLDSESQGSGVFLPELDEPE 681
>gi|57634514 SPANX-N2 protein [Homo sapiens]
Length = 180
Score = 41.2 bits (95), Expect = 0.005
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 812 VFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVK 871
V+++R + K+ + +K + E SI V +EE E L D+ S ++D D +
Sbjct: 54 VYYYRKHTKINSNQLEKDQSRENSINPVQEEEDEGL------DSAEGSSQEDEDLDSS-- 105
Query: 872 KRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESES 931
+D LD SEGS E +LD E S +D + +E +D + S+
Sbjct: 106 -EGSSQEDEDLDS-SEGSSQEDEDLDSSEGSSQEDEDLDSSEGSSQEDEDLDPPEGSSQE 163
Query: 932 VPELEVHSKVSTKKSKRKGTDD 953
+L+ S++ S ++G +D
Sbjct: 164 DEDLD-----SSEGSSQEGGED 180
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 41.2 bits (95), Expect = 0.005
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 35/131 (26%)
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLD 883
+E Q+ + ++ VD+EE +E G+D+ D +
Sbjct: 150 REDQEAPDSDAEVDGVDEEEEDE------------EGEDEED-----------------E 180
Query: 884 EDSEGSDDELGNLDDDEVSL-GSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVS 942
+D +G ++E DD++ + G DD+E +E +E+ G LD+E E E E +
Sbjct: 181 DDEDGEEEEFDEEDDEDEDVEGDEDDDEVSEEEEEFG-----LDEEDEDEDEDEEEEEGG 235
Query: 943 TKKSKRKGTDD 953
+ +++ TDD
Sbjct: 236 KGEKRKRETDD 246
Score = 34.7 bits (78), Expect = 0.49
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 825 EKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDE 884
++++ D + E ED DDE+ EE EDD +D D G+ ++
Sbjct: 166 DEEEEDEEGEDEEDEDDEDGEEEEFDEEDD-------EDEDVEGDEDDDEVSEEEEEFGL 218
Query: 885 DSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDG 918
D E D++ +D+E G ++ E D++G
Sbjct: 219 DEEDEDED----EDEEEEEGGKGEKRKRETDDEG 248
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 40.8 bits (94), Expect = 0.007
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 32/214 (14%)
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLD 883
K +K D+DEE ED D EE EE DD +D+++ A A ++ D
Sbjct: 138 KNAKKEDSDEE--EDDDSEEDEE------DDEDEDEDEDEIEPAAMKAAAAAPASEDEDD 189
Query: 884 EDSEGSDDELGNLDDDE-----------------------VSLGSMDDEEFAEVDEDGGT 920
ED E +D+ + +DD ++ +DEE + DED
Sbjct: 190 EDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDD 249
Query: 921 FMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAE 980
D DD+ E E E + K + G + A P KK+ + + +
Sbjct: 250 DEDDEDDDDEDDEEEEEEEEEEPVK-EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFN 308
Query: 981 EFGHLLDENMGSKFDNIGMNAMANKDNASLKQLR 1014
F L+ N + G++ + K++ ++ +R
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR 342
Score = 38.5 bits (88), Expect = 0.034
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFED--DNCFSSGKDDMDFAGNVKKRTKGA 877
K A D D+E ED +D++ +E D+ E+ + + GK K
Sbjct: 176 KAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAED 235
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDED 917
+D D++ E DD+ + DDD+ DDEE E +E+
Sbjct: 236 EDEEEDDEDEDDDDDEDDEDDDD-----EDDEEEEEEEEE 270
Score = 37.4 bits (85), Expect = 0.075
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 819 KKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKG-A 877
K A + + DE+ +D DD++ EE D E++ ++ A V + K A
Sbjct: 176 KAAAAAPASEDEDDEDDEDDEDDDDDEE--DDSEEEAMETTPAKGKKAAKVVPVKAKNVA 233
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEV 937
+D +ED E DD DDDE DDE+ + DED + ++E E P E
Sbjct: 234 EDEDEEEDDEDEDD-----DDDE------DDED--DDDEDD----EEEEEEEEEEPVKEA 276
Query: 938 HSKVSTKKSKRKGTDD 953
K + +K+K +
Sbjct: 277 PGKRKKEMAKQKAAPE 292
Score = 35.0 bits (79), Expect = 0.37
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 31/226 (13%)
Query: 11 HAKRPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLATLDENEEVIDG 70
+AK+ EE +D +E++ED+ E E+ E+ + K A+ DE++E +
Sbjct: 139 NAKKEDSDEEEDDDSEEDEEDDEDEDED----EDEIEPAAMKAAAAAPASEDEDDEDDED 194
Query: 71 GKKGAIDDLQQGELEAFIQNLNLAKYTKASLVEEDEPAEKENSSKKEVKIPKINNKNTAE 130
+ D+ E EA E PA+ KK K+ + KN AE
Sbjct: 195 DEDDDDDEEDDSEEEAM----------------ETTPAK----GKKAAKVVPVKAKNVAE 234
Query: 131 SQRTSVNKVKNKNRPEPHSDENGSTTPKVKKDKQNIFEFFERQTLLLRPGGKWYDLEYSN 190
+ + ++ + D++ +D + E E + + PG + ++
Sbjct: 235 DED------EEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMA-KQ 287
Query: 191 EYSLKPQPQDVVSKYKTLAQKLYQHEINLFKSKTNSQKGASSTWMK 236
+ + + + Q V T A L+ +N KS + G S + K
Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAK 333
Score = 33.1 bits (74), Expect = 1.4
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 628 ESDDEENFIDANDDEDMEKFTDADKETEIVKKLETEETVPETDVETKK 675
+ D+EE+ D +DD+D + D D++ E ++ E EE V E + KK
Sbjct: 235 DEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKK 282
Score = 30.4 bits (67), Expect = 9.2
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 867 AGNVKKRTKGAKDNTLDEDSEGS--DDELGNLDDDEVSLGSM-----------DDEEFAE 913
A N K K D D+DSE DDE + D+DE+ +M +D+E E
Sbjct: 134 AKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDE 193
Query: 914 VDEDGGTFMDVLDDESESVPELEVHSKVSTKKSK 947
DED DD+ E E E K K
Sbjct: 194 DDEDD-------DDDEEDDSEEEAMETTPAKGKK 220
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 40.8 bits (94), Expect = 0.007
Identities = 65/315 (20%), Positives = 119/315 (37%), Gaps = 37/315 (11%)
Query: 762 RNPKPHKGKENTDSVVMQPKRKHFIKDIRHLPVNSKEFLAKEESQIPV-----DEVFFHR 816
+ P+ KGK+ + +K++ L + ++ A E+ +E F +
Sbjct: 35 QEPQKSKGKKKKEKKKQDFDEDDILKELEELSLEAQGIKADRETVAVKPTENNEEEFTSK 94
Query: 817 YYKKVAVKEKQKR--DADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRT 874
KK K K++ D D E +ED D + + E SG DD D + K+
Sbjct: 95 DKKKKGQKGKKQSFDDNDSEELEDKDSKSKKTAKPKVE----MYSGSDDDDDFNKLPKKA 150
Query: 875 KGA--KDNTLDEDSEGSDDELGNL-------------DDDEVSLGSMDDEEFAEVDEDGG 919
KG K N + SE +D + D+ + L S ++ + ++ G
Sbjct: 151 KGKAQKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNKPGP 210
Query: 920 TFMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSA 979
+D+ S V K + KK + + D + A K R L + +
Sbjct: 211 NIESGNEDDDASFKIKTVAQKKAEKKERERKKRDEEKA--------KLRKLKEKEELETG 262
Query: 980 EEFGHLLDENMGSKFDNIGMNAMANKDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFK 1039
++ E+ KF+ + + D + +AE + + KKKK K
Sbjct: 263 KKDQSKQKESQ-RKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGD--KKKKDKK 319
Query: 1040 KKRIKTTQKTKKQRK 1054
KK+ + +K K+++K
Sbjct: 320 KKKGEKEEKEKEKKK 334
Score = 32.3 bits (72), Expect = 2.4
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 833 EESIEDVDDEEFEELIDTFEDD-NCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDD 891
EE+ V+ EE E+ D DD +S ++ GN K K+N +E+ E ++
Sbjct: 484 EETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGN--KVHIEVKENPEEEEEEEEEE 541
Query: 892 ELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKSKRKGT 951
E D+E E +E+G + D+E E V + + K KK ++ +
Sbjct: 542 E-------------EDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSKEMS 588
Query: 952 DDFDF 956
D ++
Sbjct: 589 SDSEY 593
Score = 31.6 bits (70), Expect = 4.1
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 787 KDIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEE 846
+D ++ E +A +E V+ H K+ +E+++ + +EE E ++EE E
Sbjct: 496 EDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEEEEEG 555
Query: 847 LIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDD 891
+ E D D+ D + K K +K+ + D + + DD
Sbjct: 556 ESEGSEGDEEDEKVSDEKDSGKTLDK--KPSKEMSSDSEYDSDDD 598
Score = 30.4 bits (67), Expect = 9.2
Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 823 VKEKQKRDADEESIED----VDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAK 878
V+ +++ D ++ ++D DEE E++ K ++ N ++ + +
Sbjct: 490 VEPEEEEDTEDAGLDDWEAMASDEETEKV----------EGNKVHIEVKENPEEEEEEEE 539
Query: 879 DNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMD-----------VLDD 927
+ DE+SE ++E G + E S G +DE+ ++ ++D G +D D
Sbjct: 540 EEEEDEESEEEEEEEG---ESEGSEGDEEDEKVSD-EKDSGKTLDKKPSKEMSSDSEYDS 595
Query: 928 ESESVPELEVHSKVSTKKSKRK 949
+ + E + K + KR+
Sbjct: 596 DDDRTKEERAYDKAKRRIEKRR 617
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 40.4 bits (93), Expect = 0.009
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 824 KEKQKRDADEESIEDVDDEEFE-ELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAK--DN 880
K+K+K+ +D+E+ ED DD +FE + +D D + SS +++ + ++ +G K D
Sbjct: 246 KKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGS--SSSQEEPESKAKAPQQEEGPKGVDE 303
Query: 881 TLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSK 940
D E +++ D +E ++E+ A ++ D +ES+S E ++ S+
Sbjct: 304 QSDSSEESEEEKPPEEDKEE------EEEKKAPTPQEKKRRKD-SSEESDSSEESDIDSE 356
Query: 941 VST 943
S+
Sbjct: 357 ASS 359
Score = 35.0 bits (79), Expect = 0.37
Identities = 47/178 (26%), Positives = 67/178 (37%), Gaps = 35/178 (19%)
Query: 827 QKRDADEESIEDVDDEEFEEL-IDTFEDDNCFSSGKDDMD----------------FAGN 869
Q +D DEE E + EL I EDD SS D G
Sbjct: 185 QDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGG 244
Query: 870 VKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAE------VDEDGGTFMD 923
KK+ K D+ EDS+ D E + D +S GS +E E E+G +D
Sbjct: 245 RKKKKKKGSDDEAFEDSDDGDFE--GQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGVD 302
Query: 924 VLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEE 981
D SE E + + ++ ++K P++KKR + S S+EE
Sbjct: 303 EQSDSSEESEEEKPPEEDKEEEEEKKAPT----------PQEKKRRKDSSEESDSSEE 350
Score = 32.0 bits (71), Expect = 3.2
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEV 937
KD DED E ++ G E+ + ++D+ E+ D D +E VP+ +
Sbjct: 183 KDQDQDEDEE-EKEKRGRRKASELRIHDLEDD--LEMSSDAS---DASGEEGGRVPKAKK 236
Query: 938 HS---KVSTKKSKRKGTDDFDFAGSFQG 962
+ K KK K+KG+DD F S G
Sbjct: 237 KAPLAKGGRKKKKKKGSDDEAFEDSDDG 264
>gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens]
Length = 516
Score = 40.0 bits (92), Expect = 0.012
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 696 YDPFSRNPLFCGAENTSLWELKKLSVHFHPSVALFAKTILQG-NYIQYSGDPLQDFTLMR 754
YDP +P A +SLWEL+ L H+HP V+ A I Q + + S PL + T
Sbjct: 418 YDPGEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPEVSIAPLLELTAYE 477
Query: 755 FLDR-FVYRNPKP 766
+R + P+P
Sbjct: 478 IFERDLKKKGPEP 490
>gi|33188449 serine/arginine-rich protein-specific kinase 2 isoform
a [Homo sapiens]
Length = 699
Score = 40.0 bits (92), Expect = 0.012
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 39/198 (19%)
Query: 793 PVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFE 852
P S ++ Q P+ ++ ++ KK+ K+K++ + E+ ++++++ E E E
Sbjct: 256 PPPSGSAVSTAPQQKPIGKISKNKK-KKLKKKQKRQAELLEKRLQEIEELEREAERKIIE 314
Query: 853 DDNCFSSGKDDMD--FAGNVKKRTKG---------AKDNTLDEDSEGSDD-ELGNLDDDE 900
++ ++ +D D + VK +T G AKDN ED E +D E N++ DE
Sbjct: 315 ENITSAAPSNDQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKENIEKDE 374
Query: 901 VSLGSMDDEEFAEVDE------------DGGTF-----MDVLDDESESVPELEVHSKVST 943
+ D+E A +D + G F +D DD+ E P E ++
Sbjct: 375 DDV----DQELANIDPTWIESPKTNGHIENGPFSLEQQLDDEDDDEEDCPNPEEYN---- 426
Query: 944 KKSKRKGTDDFDFAGSFQ 961
+ D+ ++ S++
Sbjct: 427 -LDEPNAESDYTYSSSYE 443
>gi|33188447 serine/arginine-rich protein-specific kinase 2 isoform
b [Homo sapiens]
Length = 688
Score = 40.0 bits (92), Expect = 0.012
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 39/198 (19%)
Query: 793 PVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELIDTFE 852
P S ++ Q P+ ++ ++ KK+ K+K++ + E+ ++++++ E E E
Sbjct: 245 PPPSGSAVSTAPQQKPIGKISKNKK-KKLKKKQKRQAELLEKRLQEIEELEREAERKIIE 303
Query: 853 DDNCFSSGKDDMD--FAGNVKKRTKG---------AKDNTLDEDSEGSDD-ELGNLDDDE 900
++ ++ +D D + VK +T G AKDN ED E +D E N++ DE
Sbjct: 304 ENITSAAPSNDQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKENIEKDE 363
Query: 901 VSLGSMDDEEFAEVDE------------DGGTF-----MDVLDDESESVPELEVHSKVST 943
+ D+E A +D + G F +D DD+ E P E ++
Sbjct: 364 DDV----DQELANIDPTWIESPKTNGHIENGPFSLEQQLDDEDDDEEDCPNPEEYN---- 415
Query: 944 KKSKRKGTDDFDFAGSFQ 961
+ D+ ++ S++
Sbjct: 416 -LDEPNAESDYTYSSSYE 432
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 40.0 bits (92), Expect = 0.012
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKD 879
+ ++ K + + D+E ED +DE+ EE EDD S +D D + + + D
Sbjct: 631 RTTLQSKSESEEDDEEDEDDEDEDEEE-----EDDENGDSSEDGGDSSESSSEDESEDGD 685
Query: 880 NTLDEDSEGSDDELGNLDDDEVSLGS 905
++D + DDE + D+D S GS
Sbjct: 686 ENEEDDEDEDDDEDDDEDEDNESEGS 711
Score = 36.2 bits (82), Expect = 0.17
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 788 DIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKR-----DADEESIEDVDDE 842
++ HLP+ KE + + S+ +YKK+A +E+QK+ D +S+ D
Sbjct: 550 ELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLA-EEQQKQYKVHLDLWVKSLSPQDRA 606
Query: 843 EFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVS 902
++E I G + ++ +++ +D+ DED E D+E + ++ + S
Sbjct: 607 AYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSS 666
Query: 903 LGSMDDEEFAEVDEDGGTFMDVLDDESESVPE 934
D E + DE + DDE E E
Sbjct: 667 EDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 40.0 bits (92), Expect = 0.012
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKD 879
+ ++ K + + D+E ED +DE+ EE EDD S +D D + + + D
Sbjct: 631 RTTLQSKSESEEDDEEDEDDEDEDEEE-----EDDENGDSSEDGGDSSESSSEDESEDGD 685
Query: 880 NTLDEDSEGSDDELGNLDDDEVSLGS 905
++D + DDE + D+D S GS
Sbjct: 686 ENEEDDEDEDDDEDDDEDEDNESEGS 711
Score = 36.2 bits (82), Expect = 0.17
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 788 DIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKR-----DADEESIEDVDDE 842
++ HLP+ KE + + S+ +YKK+A +E+QK+ D +S+ D
Sbjct: 550 ELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLA-EEQQKQYKVHLDLWVKSLSPQDRA 606
Query: 843 EFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVS 902
++E I G + ++ +++ +D+ DED E D+E + ++ + S
Sbjct: 607 AYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSS 666
Query: 903 LGSMDDEEFAEVDEDGGTFMDVLDDESESVPE 934
D E + DE + DDE E E
Sbjct: 667 EDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 40.0 bits (92), Expect = 0.012
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKD 879
+ ++ K + + D+E ED +DE+ EE EDD S +D D + + + D
Sbjct: 668 RTTLQSKSESEEDDEEDEDDEDEDEEE-----EDDENGDSSEDGGDSSESSSEDESEDGD 722
Query: 880 NTLDEDSEGSDDELGNLDDDEVSLGS 905
++D + DDE + D+D S GS
Sbjct: 723 ENEEDDEDEDDDEDDDEDEDNESEGS 748
Score = 36.2 bits (82), Expect = 0.17
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 788 DIRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKR-----DADEESIEDVDDE 842
++ HLP+ KE + + S+ +YKK+A +E+QK+ D +S+ D
Sbjct: 587 ELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLA-EEQQKQYKVHLDLWVKSLSPQDRA 643
Query: 843 EFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVS 902
++E I G + ++ +++ +D+ DED E D+E + ++ + S
Sbjct: 644 AYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSS 703
Query: 903 LGSMDDEEFAEVDEDGGTFMDVLDDESESVPE 934
D E + DE + DDE E E
Sbjct: 704 EDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 40.0 bits (92), Expect = 0.012
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 14/160 (8%)
Query: 830 DADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLD------ 883
++D+ S ++ DD + + D +D + DD D + ++ D++ D
Sbjct: 200 NSDDSSDDNSDDSDVPD--DKSDDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDD 257
Query: 884 --EDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKV 941
+DSE DD + DD E S DD E ++ D D D+SE+ + S V
Sbjct: 258 SSDDSEAPDD---SSDDSEAPDDSSDDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDV 314
Query: 942 STKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEE 981
KS D D + + P + N+ + EE
Sbjct: 315 PEDKSDDSDVPD-DNSDDLEVPVPAEDLCNEGQIASDEEE 353
Score = 37.7 bits (86), Expect = 0.057
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Query: 830 DADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGS 889
D +++ +D D+ ++ D DD+ K D + D++ D DSE
Sbjct: 187 DVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSD-DSEAP 245
Query: 890 DDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKS 946
DD + DD E S DD E + D D D+SE+ + S+ S S
Sbjct: 246 DD---SSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEASDDSSDDSEASDDSS 299
Score = 37.0 bits (84), Expect = 0.098
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 821 VAVKEKQKRDADEESIEDVDD--EEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAK 878
+ + + D + +E DD ++ E D +D DD + + ++
Sbjct: 121 IVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPD 180
Query: 879 DNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESE 930
DN+ +DS+ DD + DD S D+ + ++V +D DV DD S+
Sbjct: 181 DNS--DDSDVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSD 230
Score = 33.1 bits (74), Expect = 1.4
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 830 DADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTL-DEDSEG 888
++D+ D + ++ E D +D + DD + + D+ + D+ S+
Sbjct: 162 NSDDSEAPDDNSDDSEAPDDNSDDSDVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDD 221
Query: 889 SDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESES 931
SD + DD +V S DD E + D D D+SE+
Sbjct: 222 SDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEA 264
Score = 32.7 bits (73), Expect = 1.8
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 832 DEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGSDD 891
D DV D+ ++ D DD+ DD D + K + D + SDD
Sbjct: 181 DNSDDSDVPDDNSDDSSDDNSDDSS-DDNSDDSDVPDD--------KSDDSDVPDDSSDD 231
Query: 892 E---LGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKKSKR 948
+ DD E S DD E + D D D+SE+ + S+ S S
Sbjct: 232 SDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEASDDSSDD 291
Query: 949 KGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLLDEN 989
D D + + P K +DS + + + D+N
Sbjct: 292 SEASD-DSSDDSEAPDDKS---DDSDVPEDKSDDSDVPDDN 328
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 40.0 bits (92), Expect = 0.012
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 789 IRHLPVNSKEFLAKEESQIPVDEVFFHRYYKKVAVKEKQKRDADEESIEDVDDEEFEELI 848
++H +N KE A+E + ++ + +EE E+++ EE E
Sbjct: 351 VKHRDMNEKELEAQEARKAQLEN-----------------HEPEEEEEEEMETEEKEAGG 393
Query: 849 DTFEDDNCFSSGKD--DMDFAGNVKKRTKGAKDNTLDE----DSEGSDDELGNLDDDEVS 902
E + SS K+ + + +G+ +R +G +D D+ + E S+DE D E
Sbjct: 394 SDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEI 453
Query: 903 LGS-MDDEEFAEV-DEDGGTFMDVLDDESES 931
GS D E+ A+ DED G D++S+S
Sbjct: 454 FGSDADSEDDADSDDEDRGQAQGGSDNDSDS 484
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 39.7 bits (91), Expect = 0.015
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 23/227 (10%)
Query: 830 DADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKDNTLDEDSEGS 889
D DEE E+ +D + EE ++++ KDD +GN K K +D +++ +
Sbjct: 4781 DDDEEEDEEEEDNKTEETGPGMDEEDSELVAKDDNLDSGNSNK-DKSQQDKKEEKEEAEA 4839
Query: 890 DDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPE---LEVHSKVSTKKS 946
DD G +D+++ +D+ ++ E + +D E VPE L++ ++
Sbjct: 4840 DD--GGQGEDKIN-EQIDERDYDENE------VDPYHGNQEKVPEPEALDLPDDLNLDSE 4890
Query: 947 KRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFD-NIGMNAMANK 1005
+ G +D D ++ N + EE GH +E ++ D N + +
Sbjct: 4891 DKNGGEDTD--------NEEGEEENPLEIKEKPEEAGHEAEERGETETDQNESQSPQEPE 4942
Query: 1006 DNASL-KQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQKTKK 1051
+ S + E E D ++D + ++H ++++ +K K+
Sbjct: 4943 EGPSEDDKAEGEEEMDTGADDQDGDAAQHPEEHSEEQQQSVEEKDKE 4989
Score = 33.5 bits (75), Expect = 1.1
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)
Query: 824 KEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTK---GAKDN 880
+++++ D E DEE EL+ +DDN SG + D + KK K A D
Sbjct: 4786 EDEEEEDNKTEETGPGMDEEDSELV--AKDDN-LDSGNSNKDKSQQDKKEEKEEAEADDG 4842
Query: 881 TLDEDSEGSDDELGNLDDDEV--------------SLGSMDDEEFAEVDEDGGTFMDVLD 926
ED + + D++EV +L DD D++GG D +
Sbjct: 4843 GQGEDKINEQIDERDYDENEVDPYHGNQEKVPEPEALDLPDDLNLDSEDKNGGEDTDNEE 4902
Query: 927 DESESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLL 986
E E+ E++ + + +++ +G + D Q P++ + ++ EE
Sbjct: 4903 GEEENPLEIKEKPEEAGHEAEERGETETD-QNESQSPQEPEEGPSEDDKAEGEEEMDTGA 4961
Query: 987 DENMG 991
D+ G
Sbjct: 4962 DDQDG 4966
Score = 32.0 bits (71), Expect = 3.2
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 834 ESIEDVDDE--EFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAK----------DNT 881
E ++DV D+ E++ DTF+ K+D D ++K + D
Sbjct: 4684 EGMKDVSDQIGNEEQVEDTFQKGQ--EKDKEDPDSKSDIKGEDNAIEMSEDFDGKMHDGE 4741
Query: 882 LDE---DSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESE 930
L+E D E SD E G+LD +G ++ EE ++DE D +DE E
Sbjct: 4742 LEEQEEDDEKSDSEGGDLDK---HMGDLNGEEADKLDERLWGDDDEEEDEEE 4790
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 39.3 bits (90), Expect = 0.020
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 20 EAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLATLDENEEVIDGGKKGAIDDL 79
E+ E+ D D + SE+E+G E G +E + D + + +
Sbjct: 678 ESEEEEDSSDSSSDSESESGSESGEQGESG------------EEGDSNEDSSEDSSSEQD 725
Query: 80 QQGELEAFIQNLNLAKY-TKASLVEEDEPAEKENSSKKEVKIPKINNKNTAESQRTSVNK 138
+ E+ ++N AK +KA + E EKEN K ++ + + S S +
Sbjct: 726 SESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSD----SSNDESSSIEDSSSD 781
Query: 139 VKNKNRPEPHSDENGSTTPKVKKDKQN 165
++++ PE S+ T K KK KQ+
Sbjct: 782 SESESEPESESESRRVTKEKEKKTKQD 808
Score = 38.1 bits (87), Expect = 0.044
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 830 DADEES-IEDVDDEEFEELIDTFEDDNCFSSGKDDMDF---AGNVKKRTKGAKDNTLDED 885
D++ ES E + E E D+ ED + SS + D + +G KRT AK N+ +
Sbjct: 691 DSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRT--AKRNSKAKG 748
Query: 886 SEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHSKVSTKK 945
S+D G ++++ ++E + +++ D ESES PE E S+ TK+
Sbjct: 749 KSDSED--GEKENEKSKTSDSSNDESSSIEDSSS------DSESESEPESESESRRVTKE 800
Query: 946 SKRKGTDD 953
++K D
Sbjct: 801 KEKKTKQD 808
Score = 32.3 bits (72), Expect = 2.4
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 867 AGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLD 926
AG K+ K + E+ E S D + D E GS E+ E E+G + D +
Sbjct: 663 AGKAKQENSAKKFYSESEEEEDSSD---SSSDSESESGSESGEQ-GESGEEGDSNEDSSE 718
Query: 927 D-----ESESVPELEVHSKVSTKK-SKRKGTDDFDFAGSFQGPRKKKRNLNDSS 974
D +SES E + +K + K+ SK KG D + K + ND S
Sbjct: 719 DSSSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDES 772
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 39.3 bits (90), Expect = 0.020
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 19/229 (8%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKD 879
K ++ K+KR ES D E E+ I + + A KKR KD
Sbjct: 761 KSSIISKKKRQTQSESSNY--DSELEKEIKSMSK----------IGAARTTKKRIPNTKD 808
Query: 880 NTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHS 939
ED + S + N + + AE ++ TF + +E+
Sbjct: 809 FDSSEDEKHSKKGMDNQGHKNLKTSQEGSSDDAERKQERETFSSAEGTVDKDTTIMELRD 868
Query: 940 KVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGM 999
++ K+ TD D G + +L + + E+ HL + D G+
Sbjct: 869 RLPKKQQASASTDGVD---KLSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQD--GL 923
Query: 1000 NAMANKDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQK 1048
+ +A K K E DD ++ KK FKKK IK Q+
Sbjct: 924 SDIAEK--FLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKKKVIKMEQQ 970
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 39.3 bits (90), Expect = 0.020
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 19/229 (8%)
Query: 820 KVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGAKD 879
K ++ K+KR ES D E E+ I + + A KKR KD
Sbjct: 799 KSSIISKKKRQTQSESSNY--DSELEKEIKSMSK----------IGAARTTKKRIPNTKD 846
Query: 880 NTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGTFMDVLDDESESVPELEVHS 939
ED + S + N + + AE ++ TF + +E+
Sbjct: 847 FDSSEDEKHSKKGMDNQGHKNLKTSQEGSSDDAERKQERETFSSAEGTVDKDTTIMELRD 906
Query: 940 KVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEEFGHLLDENMGSKFDNIGM 999
++ K+ TD D G + +L + + E+ HL + D G+
Sbjct: 907 RLPKKQQASASTDGVD---KLSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQD--GL 961
Query: 1000 NAMANKDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQK 1048
+ +A K K E DD ++ KK FKKK IK Q+
Sbjct: 962 SDIAEK--FLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKKKVIKMEQQ 1008
>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
Length = 1621
Score = 38.1 bits (87), Expect = 0.044
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 820 KVAVKEKQKRD--ADEESIEDVDDEEFEELIDTFEDDNCFSSGKDDMDFAGNVKKRTKGA 877
K + K+ +KR+ +D+ES + D EE E ++ D +R K
Sbjct: 1318 KPSAKKVKKRNPWSDDESKSESDLEETEPVVIP-----------RDSLLRRAAAERPKYT 1366
Query: 878 KDNTLDEDSEGSDDELGNLDDDEVSLGSM-----DDEEFAE---VDEDGGTFMDVLDDES 929
D + +ED + DD+ N D +E+ + + ++EF +D+D TF +S
Sbjct: 1367 FDFSEEEDDDADDDDDDNNDLEELKVKASPITNDGEDEFVPSDGLDKDEYTFS---PGKS 1423
Query: 930 ESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLNDSSLFVSAEE 981
++ PE +H K S DF F P +++ +DS+ F S EE
Sbjct: 1424 KATPEKSLHDKKSQ-----------DFGNLFSFPSYSQKSEDDSAKFDSNEE 1464
Score = 32.0 bits (71), Expect = 3.2
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 19 EEAVEDPDEEDEDNTSEAENGFSLEEVLRLGGTKQDYLMLATLDENEEVIDGGKKGAIDD 78
EE +D D++D+DN E + G + +++ LD++E GK A +
Sbjct: 1371 EEEDDDADDDDDDNNDLEELKVKASPITNDG--EDEFVPSDGLDKDEYTFSPGKSKATPE 1428
Query: 79 LQQGELEAFIQNL-NLAKYTKASLVEEDEPAEKENSSKKEVKI--PKINNKNTAESQRTS 135
+ ++ Q+ NL + S ED+ A+ +++ + + P K T + +
Sbjct: 1429 KSLHDKKS--QDFGNLFSFPSYSQKSEDDSAKFDSNEEDSASVFSPSFGLKQTDKVPSKT 1486
Query: 136 VNKVKNKNRPEPHSDENGSTTPKVKK 161
V K K P SD T PK K+
Sbjct: 1487 VAAKKGK----PSSD----TVPKPKR 1504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,302,757
Number of Sequences: 37866
Number of extensions: 1837936
Number of successful extensions: 9549
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 7736
Number of HSP's gapped (non-prelim): 1669
length of query: 1054
length of database: 18,247,518
effective HSP length: 113
effective length of query: 941
effective length of database: 13,968,660
effective search space: 13144509060
effective search space used: 13144509060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.