RTF1 11286

Name: RTF1	Sequence: fasta or formatted (710aa)		NCBI GI: 195976782
Description: Paf1/RNA polymerase II complex component		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 51 7 C cysteine 0.6 4 1 D aspartate 7.0 50 2 E glutamate 12.1 86 5 F phenylalanine 2.4 17 2 G glycine 5.1 36 3 H histidine 1.1 8 1 I isoleucine 3.2 23 1 K lysine 12.5 89 4 L leucine 6.6 47 2 M methionine 2.1 15 1 N asparagine 4.1 29 1 P proline 3.5 25 2 Q glutamine 4.8 34 2 R arginine 7.0 50 2 S serine 10.6 75 6 T threonine 3.8 27 2 V valine 4.4 31 2 W tryptophan 0.6 4 1 Y tyrosine 1.3 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Paf1/RNA polymerase II complex component HDGF2 0.044 hepatoma-derived growth factor-related protein 2 iso... HDGF2 0.044 hepatoma-derived growth factor-related protein 2 iso... CYLC1 0.041 cylicin, basic protein of sperm head cytoskeleton 1... IWS1 0.040 IWS1 homolog EIF5B 0.040 eukaryotic translation initiation factor 5B CALD1 0.039 caldesmon 1 isoform 1 ATRX 0.038 transcriptional regulator ATRX isoform 2 ATRX 0.038 transcriptional regulator ATRX isoform 1 LOC100286959 0.036 PREDICTED: hypothetical protein XP_002343921 PPIG 0.035 peptidylprolyl isomerase G TCHH 0.035 trichohyalin WDR87 0.035 NYD-SP11 protein CYLC2 0.035 cylicin 2 NEFH 0.033 neurofilament, heavy polypeptide 200kDa LOC100133599 0.033 PREDICTED: hypothetical protein CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... SFRS12 0.033 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.033 splicing factor, arginine/serine-rich 12 isoform b [... LOC727832 0.033 golgi autoantigen, golgin subfamily a-like CDC2L2 0.032 cell division cycle 2-like 2 isoform 1 CDC2L2 0.032 cell division cycle 2-like 2 isoform 4 LOC283685 0.032 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100133599 0.032 PREDICTED: hypothetical protein CDC2L1 0.032 cell division cycle 2-like 1 (PITSLRE proteins) isof... THOC2 0.031 THO complex 2 RBM25 0.031 RNA binding motif protein 25 RPGR 0.031 retinitis pigmentosa GTPase regulator isoform C [Hom... DDX46 0.031 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 LOC100294088 0.031 PREDICTED: hypothetical protein, partial Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.