BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|39930473 ligand dependent nuclear receptor corepressor [Homo sapiens] (433 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|39930473 ligand dependent nuclear receptor corepressor [Homo ... 858 0.0 gi|33667089 ligand dependent nuclear receptor corepressor-like [... 55 9e-08 gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 39 0.009 gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 39 0.009 gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 38 0.016 gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 38 0.016 gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 37 0.027 gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 37 0.027 gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 37 0.027 gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 37 0.027 gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 37 0.035 gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 37 0.035 gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 37 0.035 gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 37 0.035 gi|154816198 transcription elongation factor B polypeptide 3C-li... 36 0.078 gi|156938279 transcription elongation factor B polypeptide 3C [H... 36 0.078 gi|91982772 mucin 17 [Homo sapiens] 35 0.10 gi|161019170 mucin 5AC [Homo sapiens] 35 0.17 gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 35 0.17 gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 35 0.17 gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 35 0.17 gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 35 0.17 gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 35 0.17 gi|28559039 mediator complex subunit 1 [Homo sapiens] 35 0.17 gi|16507200 ubiquitin specific protease 28 [Homo sapiens] 35 0.17 gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 35 0.17 gi|7662184 zinc finger homeobox 1b [Homo sapiens] 34 0.30 gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.30 gi|19913398 smoothelin isoform a [Homo sapiens] 34 0.30 gi|169234723 lin-54 homolog isoform b [Homo sapiens] 33 0.39 >gi|39930473 ligand dependent nuclear receptor corepressor [Homo sapiens] Length = 433 Score = 858 bits (2216), Expect = 0.0 Identities = 433/433 (100%), Positives = 433/433 (100%) Query: 1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD Sbjct: 1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60 Query: 61 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR Sbjct: 61 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120 Query: 121 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL 180 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL Sbjct: 121 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL 180 Query: 181 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD 240 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD Sbjct: 181 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD 240 Query: 241 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS 300 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS Sbjct: 241 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS 300 Query: 301 RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV 360 RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV Sbjct: 301 RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV 360 Query: 361 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ 420 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ Sbjct: 361 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ 420 Query: 421 GEAAQSANESKNE 433 GEAAQSANESKNE Sbjct: 421 GEAAQSANESKNE 433 >gi|33667089 ligand dependent nuclear receptor corepressor-like [Homo sapiens] Length = 318 Score = 55.5 bits (132), Expect = 9e-08 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 13/108 (12%) Query: 1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60 M++MI+QFA EY SK+ TQ+ +N S + S + Q L + Sbjct: 161 MKKMIRQFAIEYISKSGKTQE------NRNGS------IGPSIVCKSIQMNQAENSLQEE 208 Query: 61 QDSPLDLTVRKSQSEPSEQ-DGVLDLSTKKSPCAGSTSLSHSPGCSST 107 Q+ PLDLTV + Q + ++Q DGVLDLSTKK+ S P ++ Sbjct: 209 QEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENS 256 >gi|239743293 PREDICTED: mucin 12 [Homo sapiens] Length = 5478 Score = 38.9 bits (89), Expect = 0.009 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 1076 QESTTFHSNPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 1134 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 1135 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 1192 Query: 118 QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151 PD G P S T G G ST+ ++ Sbjct: 1193 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 1221 Score = 38.9 bits (89), Expect = 0.009 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 2159 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 2217 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 2218 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 2275 Query: 118 QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151 PD G P S T G G ST+ ++ Sbjct: 2276 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 2304 Score = 38.9 bits (89), Expect = 0.009 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 3716 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 3774 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 3775 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 3832 Query: 118 QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151 PD G P S T G G ST+ ++ Sbjct: 3833 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 3861 Score = 37.7 bits (86), Expect = 0.020 Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 11/151 (7%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAA--TTQNPVLSKLLMADQDSP 64 Q + + S ST P+ST + + +AS S T + TT +P S +S Sbjct: 2633 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGEST 2692 Query: 65 LDLT----VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120 T + S PS ++ ST GST +H P S+T G+ Sbjct: 2693 TFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSS 2752 Query: 121 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151 PD G P S T G G ST+ ++ Sbjct: 2753 PD----ASGTTPSSAH-STTSGRGESTTSRI 2778 Score = 31.6 bits (70), Expect = 1.5 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 7/143 (4%) Query: 12 YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68 ++S ++ PS ST + + +++ +SP + T + P S ++S T Sbjct: 4721 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 4780 Query: 69 VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGD 128 S PS +++ T GS + +H P S+T G S PD + Sbjct: 4781 THTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPD----TN 4836 Query: 129 GVPPRSLQDGTREGFGHSTSLKV 151 G+ P T ST+ + Sbjct: 4837 GITPLPAHFTTSGRIAESTTFYI 4859 Score = 31.2 bits (69), Expect = 1.9 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 11/110 (10%) Query: 16 NSSTQDPSQPN--------STKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67 NS P+ P ST + P ++P T ++TT S+ SP+ Sbjct: 4477 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGR--SEESTTVHSSPVAT 4534 Query: 68 TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 S + S G+++ ST GST H P ++T G G S Sbjct: 4535 ATTPSPAR-STTSGLVEESTTYHSSPGSTQTMHFPESNTTSGRGEESTTS 4583 Score = 31.2 bits (69), Expect = 1.9 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 15/105 (14%) Query: 18 STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77 ST S P ST+ P+++ + +TT + T S PS Sbjct: 4552 STTYHSSPGSTQTMHFPESNTTSGRGEESTTSH---------------SSTTHTISSAPS 4596 Query: 78 EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122 +++ T GST+ +H P S+T G S D Sbjct: 4597 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 4641 Score = 30.8 bits (68), Expect = 2.5 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%) Query: 18 STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77 ST S P ST+ P++ + +TT + T S PS Sbjct: 829 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 873 Query: 78 EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122 +++ T GST+ +H P S+T G S D Sbjct: 874 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 918 Score = 30.8 bits (68), Expect = 2.5 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%) Query: 12 YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68 ++S ++ PS ST + + +++ +SP + T + P S ++S T Sbjct: 1888 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 1947 Query: 69 VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122 S PS +++ T GST+ +H P S+T G S D Sbjct: 1948 THTISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 2001 Score = 30.8 bits (68), Expect = 2.5 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71 S+ S+T S P ST+ P+++ + TT P + + +DS + Sbjct: 2854 SEESTTVYSSSPGSTETTVFPRSTTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEE 2913 Query: 72 SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118 S + P S Q G+ DL ST +GST + SP S+T G PS+ Sbjct: 2914 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSR 2973 Query: 119 YRP 121 P Sbjct: 2974 LSP 2976 Score = 30.8 bits (68), Expect = 2.5 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%) Query: 16 NSSTQDPSQPN--------STKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67 NS P+ P ST + P ++P T ++TT S+ SP+ Sbjct: 3394 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGR--SEESTTVHSSPVAT 3451 Query: 68 TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 S + S G+++ ST GST H P +T G G S Sbjct: 3452 ATTPSPAR-STTSGLVEESTTYHSSPGSTQTMHFPESDTTSGRGEESTTS 3500 Score = 30.8 bits (68), Expect = 2.5 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%) Query: 18 STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77 ST S P ST+ P++ + +TT + T S PS Sbjct: 3469 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 3513 Query: 78 EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122 +++ T GST+ +H P S+T G S D Sbjct: 3514 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 3558 Score = 30.4 bits (67), Expect = 3.3 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 15/123 (12%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71 S+ S+T S P ST+ P+++ + TT P + + +DS + Sbjct: 3937 SEESTTVYSSSPGSTETTVFPRSTTTSVRREEPTTFHSRPASTHTTLFTEDSTTSGLTEE 3996 Query: 72 SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118 S + P S Q G+ DL ST +GST SP S+T G PS+ Sbjct: 3997 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGESTPSR 4056 Query: 119 YRP 121 P Sbjct: 4057 LSP 4059 Score = 29.6 bits (65), Expect = 5.6 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71 S+ S+T S P ST+ P+ + TT P + + +DS + Sbjct: 2380 SEESTTVYSSSPGSTETTVFPRTPTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEE 2439 Query: 72 SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118 S + P S Q G+ DL ST +GST + SP S+T G PS+ Sbjct: 2440 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSR 2499 Query: 119 YRP 121 P Sbjct: 2500 LSP 2502 >gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo sapiens] Length = 2036 Score = 38.9 bits (89), Expect = 0.009 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 563 QESTTFHSNPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 621 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 622 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 679 Query: 118 QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151 PD G P S T G G ST+ ++ Sbjct: 680 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 708 Score = 31.6 bits (70), Expect = 1.5 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 7/143 (4%) Query: 12 YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68 ++S ++ PS ST + + +++ +SP + T + P S ++S T Sbjct: 1375 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 1434 Query: 69 VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGD 128 S PS +++ T GS + +H P S+T G S PD + Sbjct: 1435 THTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPD----TN 1490 Query: 129 GVPPRSLQDGTREGFGHSTSLKV 151 G+ P T ST+ + Sbjct: 1491 GITPLPAHFTTSGRIAESTTFYI 1513 Score = 30.8 bits (68), Expect = 2.5 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%) Query: 18 STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77 ST S P ST+ P++ + +TT + T S PS Sbjct: 316 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 360 Query: 78 EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122 +++ T GST+ +H P S+T G S D Sbjct: 361 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 405 >gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] Length = 587 Score = 38.1 bits (87), Expect = 0.016 Identities = 64/269 (23%), Positives = 95/269 (35%), Gaps = 30/269 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 235 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 293 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 294 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 351 Query: 118 QYRPDGL--------RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSR-NQ 168 PD + GV S ++ G H+T+ S E S +Q Sbjct: 352 HSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQ 411 Query: 169 LSTAASL-------GPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDL 221 ST A+L G + SR +S H F+ S + + + Sbjct: 412 GSTEATLDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTH--FSASSTTLGRSEESTTVHSS 469 Query: 222 PFLAENSAFPKMALQAKQDGKKDVSHSSP 250 P E +A P A K +SSP Sbjct: 470 PGSTETTALPGSTTTAGLSEKSTTFYSSP 498 >gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] Length = 456 Score = 38.1 bits (87), Expect = 0.016 Identities = 64/269 (23%), Positives = 95/269 (35%), Gaps = 30/269 (11%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57 Q + + S ST P+ST + + +AS P TT A++T +P L Sbjct: 129 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 187 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117 A Q P + + S PS ++ ST GST +H P S+T G+ Sbjct: 188 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 245 Query: 118 QYRPDGL--------RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSR-NQ 168 PD + GV S ++ G H+T+ S E S +Q Sbjct: 246 HSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQ 305 Query: 169 LSTAASL-------GPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDL 221 ST A+L G + SR +S H F+ S + + + Sbjct: 306 GSTEATLDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTH--FSASSTTLGRSEESTTVHSS 363 Query: 222 PFLAENSAFPKMALQAKQDGKKDVSHSSP 250 P E +A P A K +SSP Sbjct: 364 PGSTETTALPGSTTTAGLSEKSTTFYSSP 392 >gi|169166609 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 6 [Homo sapiens] Length = 305 Score = 37.4 bits (85), Expect = 0.027 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK + Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|113415994 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 2 [Homo sapiens] Length = 305 Score = 37.4 bits (85), Expect = 0.027 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK + Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapiens] Length = 305 Score = 37.4 bits (85), Expect = 0.027 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK + Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sapiens] Length = 305 Score = 37.4 bits (85), Expect = 0.027 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK + Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|113415504 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 37.0 bits (84), Expect = 0.035 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|169166499 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 37.0 bits (84), Expect = 0.035 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|113415498 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 37.0 bits (84), Expect = 0.035 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|88973230 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 3 [Homo sapiens] Length = 305 Score = 37.0 bits (84), Expect = 0.035 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 +K SST+ PS P K++S K+ + AT ++ +++D D T RK Sbjct: 18 NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133 S S S+ S STS S G SS+ + R G S R S G P Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 134 S 134 S Sbjct: 127 S 127 >gi|154816198 transcription elongation factor B polypeptide 3C-like [Homo sapiens] Length = 546 Score = 35.8 bits (81), Expect = 0.078 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 9/180 (5%) Query: 84 DLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDG---LRSGDGVPPRSLQDGTR 140 D + P + L G +PGR + G L G P+ G+ Sbjct: 164 DSGPHRDPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSH 223 Query: 141 EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHY 200 GH +S +S + E R Q + A S GP + +H + +W + +Y Sbjct: 224 SK-GHKSSRGASAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANY 282 Query: 201 EFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPV-DLKIPQVR 259 + LS + + A P L E +AFP + AK S S P L++P +R Sbjct: 283 DL-LSAFEAMTSQANPEALSAPTLQEEAAFPGRRVNAKM---PVYSGSRPACQLQVPTLR 338 >gi|156938279 transcription elongation factor B polypeptide 3C [Homo sapiens] Length = 546 Score = 35.8 bits (81), Expect = 0.078 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 9/180 (5%) Query: 84 DLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDG---LRSGDGVPPRSLQDGTR 140 D + P + L G +PGR + G L G P+ G+ Sbjct: 164 DSGPHRDPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSH 223 Query: 141 EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHY 200 GH +S +S + E R Q + A S GP + +H + +W + +Y Sbjct: 224 SK-GHKSSRGASAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANY 282 Query: 201 EFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPV-DLKIPQVR 259 + LS + + A P L E +AFP + AK S S P L++P +R Sbjct: 283 DL-LSAFEAMTSQANPEALSAPALQEEAAFPGRRVNAKM---PVYSGSRPACQLQVPTLR 338 >gi|91982772 mucin 17 [Homo sapiens] Length = 4493 Score = 35.4 bits (80), Expect = 0.10 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73 + +++ + S P ST ++ + + V S T + + D ++PL + S Sbjct: 3202 TSSTTAEGTSIPTSTPSEGMTPLTSVPVSNTPVASSEASILSTTPVDSNTPLTTSTEASS 3261 Query: 74 SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107 S P+ + + ST P GST L+ P ++T Sbjct: 3262 SPPTAEGTSMPTST---PSEGSTPLTSMPVSTTT 3292 Score = 33.5 bits (75), Expect = 0.39 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 14/173 (8%) Query: 9 AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAAT-TQNPVLSKL--LMADQDSPL 65 + E TS ++ + S P ST ++ +P+T++P + T N S L D ++PL Sbjct: 958 STEATSSPTTAEGTSIPTSTPSEG---TTPLTSTPVSHTLVANSEASTLSTTPVDSNTPL 1014 Query: 66 DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLR 125 + S P+ + + ST P GST L+ P ++ + S D Sbjct: 1015 TTSTEASSPPPTAEGTSMPTST---PSEGSTPLTRMPVSTTMVASSETSTLSTTPADTST 1071 Query: 126 SGDGVPPRSLQDGTREGFGHSTSL----KVPLARSLQISEELLSRNQLSTAAS 174 S T +G TS PL S+ +S L+ ++ ST ++ Sbjct: 1072 PVTTYSQASSSSTTADGTSMPTSTYSEGSTPLT-SVPVSTRLVVSSEASTLST 1123 Score = 33.1 bits (74), Expect = 0.50 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 21/177 (11%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPK------ASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66 T +ST+ S P +++ S+P ++P+T+ P + T PV+S +P+D Sbjct: 894 TPVTNSTEARSSPTTSEGTSMPTSTPGEGSTPLTSMPDSTT---PVVSSEARTLSATPVD 950 Query: 67 -----LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRP 121 T ++ S P+ +G + T +P G+T L+ +P + N S Sbjct: 951 TSTPVTTSTEATSSPTTAEGT-SIPT-STPSEGTTPLTSTPVSHTLVANSEASTLSTTPV 1008 Query: 122 DG----LRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAAS 174 D S + P +GT + PL R + +S +++ ++ ST ++ Sbjct: 1009 DSNTPLTTSTEASSPPPTAEGTSMPTSTPSEGSTPLTR-MPVSTTMVASSETSTLST 1064 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 9 AAEYTSKNSSTQDPSQPNSTKNQSLP--KASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66 +AE TS ++ + S P ST ++ K+ PV+ +P A + + + D +SP+ Sbjct: 1430 SAEATSSPTTAEGISIPTSTPSEGKTPLKSIPVSNTPVANSEASTL--STTPVDSNSPVV 1487 Query: 67 LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107 + S S + + +ST P GST+L+ P ++T Sbjct: 1488 TSTAVSSSPTPAEGTSIAIST---PSEGSTALTSIPVSTTT 1525 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPKASPVT-TSPTAA--TTQNPVLSK------LLMADQDS 63 T +ST+ S P + + S+P + P T+P A+ + PV+S D + Sbjct: 2426 TPVTTSTEASSSPTTAEGTSIPTSPPSEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTST 2485 Query: 64 PLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102 P+ + S S + +D V+ +ST GST L+ P Sbjct: 2486 PMTTSTEASSSPTTAEDIVVPISTASE---GSTLLTSIP 2521 Score = 31.2 bits (69), Expect = 1.9 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 9/102 (8%) Query: 9 AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAAT-TQNPVLSKL--LMADQDSPL 65 + E TS ++ + S P ST ++ + +P+T++P + T N S L D +SP+ Sbjct: 1783 STEATSSPTTAEGTSIPTSTLSEGM---TPLTSTPVSHTLVANSEASTLSTTPVDSNSPV 1839 Query: 66 DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107 +T S P+ +G ++T +P GST+L+ P ++T Sbjct: 1840 -VTSTAVSSSPTPAEGT-SIAT-STPSEGSTALTSIPVSTTT 1878 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 10 AEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTV 69 A+ +S ++ S P ST + P + + S T + +AD +P+ T Sbjct: 1902 AQVSSSPTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPV-TTY 1960 Query: 70 RKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102 ++ S P+ DG + S GST L+ P Sbjct: 1961 SQASSSPTTADGTSMPTPAYS--EGSTPLTSMP 1991 Score = 30.4 bits (67), Expect = 3.3 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 17/171 (9%) Query: 17 SSTQDPSQPNSTKNQSLPKASPVTTS---PTAATTQNPVLSKLLMADQDSPLD-----LT 68 +ST+ S P + + S+P ++P TS + PV S +P+D T Sbjct: 2784 TSTEASSSPTTAEVTSMPTSTPSETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTT 2843 Query: 69 VRKSQSEPSEQDG-VLDLSTKKSPCAGSTSLSHSP----GCSSTQGNGRPGRPSQYRPDG 123 K+ S P+ +G V+ +ST GST L+ P +S++ + P Sbjct: 2844 STKASSSPTTAEGIVVPISTASE---GSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPV 2900 Query: 124 LRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAAS 174 S +G + +GT + + PL S+ +S ++ ++ ST ++ Sbjct: 2901 TTSTEGSSSPTTAEGTSMPISTPSEVSTPLT-SILVSTVPVAGSEASTLST 2950 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLT 68 T +ST+ S P +++ S+P ++P + + T PV + L+++ +DS L T Sbjct: 3134 TPVTTSTEAHSSPTTSEGTSMPTSTP--SEGSTPLTYMPVSTMLVVSSEDSTLSAT 3187 Score = 29.6 bits (65), Expect = 5.6 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 16/109 (14%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPKA------SPVTTSPTAATTQNPVLSKLLMADQDSPLD 66 T +ST+ S P +++ S+P + +P+T+ P + T PV+S +P+D Sbjct: 1366 TPVTTSTEACSSPTTSEGTSMPNSNPSEGTTPLTSIPVSTT---PVVSSEASTLSATPVD 1422 Query: 67 -----LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGN 110 T ++ S P+ +G+ + T +P G T L P ++ N Sbjct: 1423 TSTPGTTSAEATSSPTTAEGI-SIPT-STPSEGKTPLKSIPVSNTPVAN 1469 Score = 29.6 bits (65), Expect = 5.6 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 16/102 (15%) Query: 9 AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD-- 66 + E S ++++ S PNST ++ +P+T+ P + T PVLS +P+D Sbjct: 1724 STEARSSPTTSEGTSMPNSTPSEG---TTPLTSIPVSTT---PVLSSEASTLSATPIDTS 1777 Query: 67 ---LTVRKSQSEPSEQDG----VLDLSTKKSPCAGSTSLSHS 101 T ++ S P+ +G LS +P ST +SH+ Sbjct: 1778 TPVTTSTEATSSPTTAEGTSIPTSTLSEGMTPLT-STPVSHT 1818 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 9 AAEYTSKNSSTQDPSQPNSTKNQ-SLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67 +AE +S ++ + S P ST + P S ++ A+++ LS+ AD +P+ Sbjct: 2962 SAEASSSPTTAEGTSMPISTPGERRTPLTSMSVSTMPVASSEASTLSR-TPADTSTPVTT 3020 Query: 68 TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102 + S S + + + +ST P GST L+ P Sbjct: 3021 STEASSSPTTAEGTGIPIST---PSEGSTPLTSIP 3052 Score = 29.3 bits (64), Expect = 7.3 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 12/95 (12%) Query: 17 SSTQDPSQPNSTKNQSLPKASPV--TTSPTAATTQNPVL-------SKLLMADQDSPLDL 67 SST+D S P + + +P ++P + S T A L S D +PL Sbjct: 131 SSTEDTSSPTTPEGTDVPMSTPSEESISSTMAFVSTAPLPSFEAYTSLTYKVDMSTPLTT 190 Query: 68 TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102 + + S S + + + ST GST L+ P Sbjct: 191 STQASSSPTTPESTTIPKSTNSE---GSTPLTSMP 222 Score = 29.3 bits (64), Expect = 7.3 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPK------ASPVTTSPTAATTQNPVLSKLLM-----ADQ 61 T +STQ S P + ++ ++PK ++P+T+ P A+T S+ + + Sbjct: 186 TPLTTSTQASSSPTTPESTTIPKSTNSEGSTPLTSMP--ASTMKVASSEAITLLTTPVEI 243 Query: 62 DSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102 +P+ ++ + S S + + L + +P GST L+ P Sbjct: 244 STPVTISAQASSSPTTAEGPSL---SNSAPSGGSTPLTRMP 281 Score = 29.3 bits (64), Expect = 7.3 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR-- 70 T ST S P ST ++P+AS ++T+P + +PV++ ++ +P + T Sbjct: 3040 TPSEGSTPLTSIPVSTTPVAIPEASTLSTTP--VDSNSPVVTSTEVSSSPTPAEGTSMPI 3097 Query: 71 KSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107 + SE S + +ST + ++LS +P +ST Sbjct: 3098 STYSEGSTPLTGVPVSTTPVTSSAISTLSTTPVDTST 3134 >gi|161019170 mucin 5AC [Homo sapiens] Length = 6207 Score = 34.7 bits (78), Expect = 0.17 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 34 PKASP-VTTSPTAATTQNPVLSKLLMADQ-DSPLDLTVRKSQSEP--SEQDGVLDLSTKK 89 P +SP +T +P A+TT P LS+ L + + S L + P S + V ++T Sbjct: 2326 PTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAGSTEPTVPGVATST 2385 Query: 90 SPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSL 149 P + S PG + + G RP +P P + + P + ++E +TSL Sbjct: 2386 LP-----TRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPL--TTSL 2438 Query: 150 KVPLARSLQISEELLSRNQLSTAAS 174 L L S+ S + T S Sbjct: 2439 APTLTSELSTSQAETSTPRTETTMS 2463 >gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] Length = 429 Score = 34.7 bits (78), Expect = 0.17 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%) Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297 +SP L + QV +W+ Q + SSLV G Q T +S K I P Sbjct: 276 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 331 Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345 + R + P + +Q QP P + P QPR++ GR Sbjct: 332 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 374 >gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] Length = 437 Score = 34.7 bits (78), Expect = 0.17 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%) Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297 +SP L + QV +W+ Q + SSLV G Q T +S K I P Sbjct: 284 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 339 Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345 + R + P + +Q QP P + P QPR++ GR Sbjct: 340 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 382 >gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] Length = 497 Score = 34.7 bits (78), Expect = 0.17 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%) Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297 +SP L + QV +W+ Q + SSLV G Q T +S K I P Sbjct: 344 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 399 Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345 + R + P + +Q QP P + P QPR++ GR Sbjct: 400 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 442 >gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] Length = 499 Score = 34.7 bits (78), Expect = 0.17 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%) Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297 +SP L + QV +W+ Q + SSLV G Q T +S K I P Sbjct: 346 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 401 Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345 + R + P + +Q QP P + P QPR++ GR Sbjct: 402 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 444 >gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] Length = 5765 Score = 34.7 bits (78), Expect = 0.17 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 34 PKASP-VTTSPTAATTQNPVLSKLLMADQ-DSPLDLTVRKSQSEP--SEQDGVLDLSTKK 89 P +SP +T +P A+TT P LS+ L + + S L + P S + V ++T Sbjct: 1636 PTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAGSTEPTVPGVATST 1695 Query: 90 SPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSL 149 P + S PG + + G RP +P P + + P + ++E +TSL Sbjct: 1696 LP-----TRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPL--TTSL 1748 Query: 150 KVPLARSLQISEELLSRNQLSTAAS 174 L L S+ S + T S Sbjct: 1749 APTLTSELSTSQAETSTPRTETTMS 1773 >gi|28559039 mediator complex subunit 1 [Homo sapiens] Length = 1581 Score = 34.7 bits (78), Expect = 0.17 Identities = 88/393 (22%), Positives = 144/393 (36%), Gaps = 62/393 (15%) Query: 12 YTSKNSSTQDPSQPNSTKNQSLPKASPVT-------TSPTAATTQ-------NPVLSKLL 57 Y+S+ SS S+ NS+++ P +SP+T +S T Q NP LSK Sbjct: 1132 YSSQGSSGSSQSK-NSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPN 1190 Query: 58 MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGN------G 111 ++ S K S G S KSP + + SH G SS+ G G Sbjct: 1191 ISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLG 1250 Query: 112 RPGRPSQYRPDGLR-----------SGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQIS 160 G SQ P SG + Q G+ +G S + K L + Sbjct: 1251 SSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVI--- 1307 Query: 161 EELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISD 220 + L +++ GP G + +S +S + N+S +F+G S+ Sbjct: 1308 -DKLKHGVVTS----GPGGEDPLDGQMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDK 1362 Query: 221 LPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVM 280 S+ K K+V + + I + G S +++ Q S Sbjct: 1363 SKVSTSGSSVDS---SKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGE 1419 Query: 281 GSQTESALSKKLRAIL-----PKQSRKS------------MLDAGPDSWGSDAEQSTPGQ 323 G + + A SK + L PK R S LD+ +S S AE+S Q Sbjct: 1420 GLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSY--Q 1477 Query: 324 PYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEE 356 P+SD P + +K ++++ ++ ++ Sbjct: 1478 NSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDK 1510 >gi|16507200 ubiquitin specific protease 28 [Homo sapiens] Length = 1077 Score = 34.7 bits (78), Expect = 0.17 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 7 QFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66 Q + E TS SS+QD S+ SLPK+ P+T+S ++ + + + ++ + + Sbjct: 483 QTSKESTSTESSSQDVESTFSSPEDSLPKSKPLTSSRSSMEMPSQPAPRTVTDEEINFVK 542 Query: 67 LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTS 97 +++ +SE EQD + DL T C ST+ Sbjct: 543 TCLQRWRSE-IEQD-IQDLKT----CIASTT 567 >gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] Length = 1073 Score = 34.7 bits (78), Expect = 0.17 Identities = 82/344 (23%), Positives = 129/344 (37%), Gaps = 55/344 (15%) Query: 17 SSTQDPSQ--PNSTKNQSLPKASPVTTSPTAAT--------TQNPVL-SKLLMADQDSPL 65 ++ Q PS P S Q P +S V P A T T P L +L++A Q S L Sbjct: 740 TAVQQPSTQVPPSVIQQGAPPSSQVV--PPAQTGIIHQGVQTSAPSLPQQLVIASQSSLL 797 Query: 66 DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ-YRPDGL 124 + + EP Q V S ++S+S + SST +G P P+ P + Sbjct: 798 TVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTGPSGMPSAPTNLVPPQNI 857 Query: 125 RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHG 184 +L + +T+ +PLA+ + +S S L+ A G Sbjct: 858 AQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQSLAQAI----------G 907 Query: 185 QHLILSREASWAKPHYEFNLSRMKFRGNGALSNISD---LPFLAENSAFPKMALQAKQ-- 239 + +R A A+P L + +G +S +SD A S FP L Sbjct: 908 SQIEDARRA--AEPSL-VGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPLTTPL 964 Query: 240 -DGKKDVSHSSPV---DLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTE-SALSKKLRA 294 DG+ + S + V D KI Q MDL S L+ + E L ++++ Sbjct: 965 VDGEDESSSGASVVAIDNKIEQ--AMDL----------VKSHLMYAVREEVEVLKEQIKE 1012 Query: 295 ILPKQSRKSMLD------AGPDSWGSDAEQSTPGQPYPTSDQEG 332 ++ K S+ + A P+ Q G P T+ +G Sbjct: 1013 LIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQG 1056 >gi|7662184 zinc finger homeobox 1b [Homo sapiens] Length = 1214 Score = 33.9 bits (76), Expect = 0.30 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%) Query: 21 DPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQD 80 D S+ N+ +L S S +++ T N S+ L A+ PLDL++ K EP Sbjct: 776 DHSRSNTPSPLNLSSTSS-KNSHSSSYTPNSFSSEELQAE---PLDLSLPKQMKEPKSI- 830 Query: 81 GVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRP 113 ++TK A S SL H+ SS++ + P Sbjct: 831 ----IATKNKTKASSISLDHNSVSSSSENSDEP 859 >gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapiens] Length = 673 Score = 33.9 bits (76), Expect = 0.30 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 14 SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN--PVLSKLLMADQDSPLDLTVRK 71 S S T+ PS+P++ P + ++ +P+ A+ P S M + S + Sbjct: 270 STASITRTPSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTA 329 Query: 72 SQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVP 131 S S + + ++ SP ++ S + S G P S S G P Sbjct: 330 SISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTP 389 Query: 132 PRSLQDGT 139 PR+ GT Sbjct: 390 PRASPTGT 397 Score = 31.2 bits (69), Expect = 1.9 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 17 SSTQDPSQPNSTKNQSLPKASPVTTSPTAA-TTQNPVLSKLLMADQDSPLDLTVRKSQSE 75 + T + P T++ + P SP T SPT + +T +P S + +P ++ K +S Sbjct: 449 TGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMEST 508 Query: 76 PSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRS 134 S + ++ SP ++ S + S+ G P R + R S P R+ Sbjct: 509 AS----ITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRA 563 Score = 30.4 bits (67), Expect = 3.3 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 28/139 (20%) Query: 14 SKNSSTQDPSQPNSTKNQSL-------PKASPVTTSPTAATTQNP-------VLSKLLMA 59 S+ S T PS + T S P+ASP T TA+ T+ P +LS+ + Sbjct: 363 SRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSIT 422 Query: 60 DQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRP-GRPSQ 118 DS T ++ P T P A T + TQ P G PS Sbjct: 423 KMDSTASPTRTPPRASP----------TGTPPRASPTGTPSRASPTGTQSTASPTGSPST 472 Query: 119 YRPDG---LRSGDGVPPRS 134 P G S G P R+ Sbjct: 473 ASPTGSPSTASPTGSPSRA 491 Score = 29.3 bits (64), Expect = 7.3 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 14/112 (12%) Query: 14 SKNSSTQDPSQPNSTKNQS-------LPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66 S+ S T PS + TK S L +ASP T P A+ T +P + L M + L Sbjct: 189 SRTSPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLI 248 Query: 67 LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQG-NGRPGRPS 117 T + + G+L T + + S++ +P ST G P R S Sbjct: 249 RTPPR-----ASPTGMLS-RTSLTKMDSTASITRTPSRPSTASPTGTPSRAS 294 >gi|19913398 smoothelin isoform a [Homo sapiens] Length = 940 Score = 33.9 bits (76), Expect = 0.30 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 27/152 (17%) Query: 34 PKASPVTTSP------TAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLST 87 P + P TTSP T +T+ V++KLL +++P + + S+ T Sbjct: 237 PPSPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPHRGPSD-----------T 285 Query: 88 KKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD-GLRSGDGVPPRSLQDGTREGFGHS 146 K++ AG S S P +P+Q R L SG P + G+ H Sbjct: 286 KRADVAGPRPCQRSLSVLS------PRQPAQNRESTPLASG---PSSFQRAGSVRDRVHK 336 Query: 147 TSLKVPLARSLQISEELLSRNQLSTAASLGPS 178 + P+A LQ + + L+ A LGPS Sbjct: 337 FTSDSPMAARLQDGTPQAALSPLTPARLLGPS 368 >gi|169234723 lin-54 homolog isoform b [Homo sapiens] Length = 528 Score = 33.5 bits (75), Expect = 0.39 Identities = 18/42 (42%), Positives = 23/42 (54%) Query: 13 TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLS 54 TS +SSTQ SQ ST Q L +A PV + T P++S Sbjct: 146 TSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVS 187 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.306 0.124 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,712,996 Number of Sequences: 37866 Number of extensions: 868923 Number of successful extensions: 4332 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 137 Number of HSP's that attempted gapping in prelim test: 4070 Number of HSP's gapped (non-prelim): 388 length of query: 433 length of database: 18,247,518 effective HSP length: 105 effective length of query: 328 effective length of database: 14,271,588 effective search space: 4681080864 effective search space used: 4681080864 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.