LIN54 9300

Name: LIN54	Sequence: fasta or formatted (528aa)		NCBI GI: 169234723
Description: lin-54 homolog isoform b		Referenced in: Metallothioneins RB1 and Related Functions
Other entries for this name: alt prot [749aa] lin-54 homolog isoform a alt mRNA [528aa] lin-54 homolog isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 44 3 C cysteine 4.5 24 1 D aspartate 1.3 7 1 E glutamate 4.4 23 2 F phenylalanine 2.3 12 1 G glycine 5.5 29 3 H histidine 0.8 4 1 I isoleucine 5.9 31 2 K lysine 7.8 41 2 L leucine 6.1 32 2 M methionine 1.5 8 1 N asparagine 5.9 31 2 P proline 8.5 45 2 Q glutamine 6.6 35 3 R arginine 3.4 18 2 S serine 9.5 50 3 T threonine 9.3 49 2 V valine 7.0 37 3 W tryptophan 0.0 0 0 Y tyrosine 1.5 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lin-54 homolog isoform b LIN54 1.000 lin-54 homolog isoform b LIN54 0.988 lin-54 homolog isoform a MTL5 0.217 metallothionein-like 5, testis-specific isoform a [H... LOC100294420 0.033 PREDICTED: similar to mucin 2 MUC2 0.031 mucin 2 precursor COL27A1 0.026 collagen, type XXVII, alpha 1 MUC17 0.025 mucin 17 LOC100133761 0.024 PREDICTED: similar to Mucin-6, partial LOC100128719 0.022 PREDICTED: hypothetical protein, partial LOC100128719 0.022 PREDICTED: hypothetical protein, partial SRCAP 0.022 Snf2-related CBP activator protein GLTSCR1 0.021 glioma tumor suppressor candidate region gene 1 [Ho... MUC6 0.020 mucin 6, gastric LOC647546 0.019 PREDICTED: hypothetical protein MUC5AC 0.018 mucin 5AC LOC732156 0.017 PREDICTED: similar to Mucin-3A MUC3B 0.017 PREDICTED: mucin 3B, cell surface associated, parti... MUC5B 0.017 mucin 5, subtype B, tracheobronchial EP400 0.016 E1A binding protein p400 MUC16 0.016 mucin 16 MUC3A 0.016 PREDICTED: mucin 3A, intestinal C11orf30 0.016 EMSY protein FLJ22184 0.015 PREDICTED: hypothetical protein FLJ22184 ATF7IP 0.015 activating transcription factor 7 interacting protei... C11orf24 0.015 hypothetical protein LOC53838 LOC284297 0.015 hypothetical protein LOC284297 EP300 0.015 E1A binding protein p300 LOC100131514 0.015 PREDICTED: similar to hCG1747327, partial KIAA2026 0.015 hypothetical protein LOC158358 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.