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Search of human proteins with 124487405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 567 e-162
gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo ... 557 e-159
gi|52353320 FSHD region gene 2 [Homo sapiens] 557 e-159
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 539 e-154
gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens] 539 e-154
gi|185136049 FSHD region gene 2 family, member C [Homo sapiens] 533 e-152
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 273 2e-73
gi|239753769 PREDICTED: similar to FSHD region gene 2 family, me... 122 3e-28
gi|239748331 PREDICTED: similar to FSHD region gene 2 family, me... 122 3e-28
gi|239742234 PREDICTED: similar to FSHD region gene 2 family, me... 122 3e-28
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 42 8e-04
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 41 0.001
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 41 0.001
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 40 0.002
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 40 0.002
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 40 0.003
gi|151301228 formin binding protein 3 [Homo sapiens] 39 0.005
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 39 0.007
gi|221316599 chromogranin B precursor [Homo sapiens] 39 0.007
gi|117190342 PHD finger protein 2 [Homo sapiens] 38 0.011
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 38 0.011
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 37 0.015
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 37 0.019
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 37 0.019
gi|62244004 modulator of estrogen induced transcription isoform ... 37 0.019
gi|63176611 modulator of estrogen induced transcription isoform ... 37 0.019
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 36 0.042
gi|122937227 U2-associated SR140 protein [Homo sapiens] 36 0.042
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.055
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.055
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 567 bits (1462), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo
sapiens]
Length = 278
Score = 557 bits (1436), Expect = e-159
Identities = 274/278 (98%), Positives = 274/278 (98%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSST VHNSEIQETCDAHHRG SRACTG SKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|52353320 FSHD region gene 2 [Homo sapiens]
Length = 278
Score = 557 bits (1436), Expect = e-159
Identities = 274/278 (98%), Positives = 274/278 (98%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSST VHNSEIQETCDAHHRG SRACTG SKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 539 bits (1389), Expect = e-154
Identities = 266/279 (95%), Positives = 272/279 (97%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRK+SSKDSCQD AGNCPE+ECS
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 120 LSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSST VHNSEIQETCDAHHRGRSRACTG SK+HRS+ALGVQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPGESALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 539 bits (1389), Expect = e-154
Identities = 266/279 (95%), Positives = 272/279 (97%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRK+SSKDSCQD AGNCPE+ECS
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 120 LSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSST VHNSEIQETCDAHHRGRSRACTG SK+HRS+ALGVQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPGESALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|185136049 FSHD region gene 2 family, member C [Homo sapiens]
Length = 282
Score = 533 bits (1372), Expect = e-152
Identities = 262/279 (93%), Positives = 270/279 (96%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRK+SSKD CQD AGNCPE+EC+
Sbjct: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
Query: 120 LSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSST VHNSEIQETCDAHHRG SRACTGRSKRHRSRAL VQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPG+SALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 273 bits (697), Expect = 2e-73
Identities = 143/203 (70%), Positives = 147/203 (72%), Gaps = 51/203 (25%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQ- 59
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
GNCPE+EC+L
Sbjct: 60 --------------------------------------------------GNCPEEECNL 69
Query: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
+LNKKSRSST VHNSEIQETCDAHHRG SRACTGRSKRHRSRAL VQTPS+RKSLVTSVR
Sbjct: 70 TLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSVR 129
Query: 181 AMSEAVYQDLAQVWAQQIHSPLT 203
AMSEAVYQDLAQVWAQQIHSPLT
Sbjct: 130 AMSEAVYQDLAQVWAQQIHSPLT 152
>gi|239753769 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 122 bits (306), Expect = 3e-28
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|239748331 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 122 bits (306), Expect = 3e-28
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|239742234 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 122 bits (306), Expect = 3e-28
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 41.6 bits (96), Expect = 8e-04
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 7/165 (4%)
Query: 5 NEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKG-KTAFSHSSEKHIQRQGSEP 63
+ED DL + D+ + S+E+ K+K + + S S H +
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 64 NPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLN 123
+P+ S +S++ S SSS RE R R S+ S + G+ ++ S S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRGSSSPRKRSYS-- 275
Query: 124 KKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQT 168
S SS+P N + + + R + T RS+ S+ +G T
Sbjct: 276 --SSSSSPERNRKRSRSRSSSSGDRKKRRT-RSRSPESQVIGENT 317
Score = 31.2 bits (69), Expect = 1.0
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 37 KKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCR 96
+K K +GK S K ++ + SE E+ + +K K + + S Y +
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 97 KRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRS 156
+ + S+K K+ + KSRSS H R SR+ + S
Sbjct: 189 EEEDSNK------------KKSNRRSRSKSRSS--------------HSRSSSRSSSPSS 222
Query: 157 KRHRSRALGVQTPSIRKSLVTSVRAMSEA 185
R RSR+ + S + +S R S +
Sbjct: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 9/161 (5%)
Query: 5 NEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKG-KTAFSHSSEKHIQRQGSEP 63
+ED DL + D+ + S+E+ K+K + + S S H +
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 64 NPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLN 123
+P+ S +S++ S SSS RE R R S+ S + G+ ++ S S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRGSSSPRKRSYS-- 275
Query: 124 KKSRSSTPVHN---SEIQETCDAHHRGRSRACTGRSKRHRS 161
S SS+P N S + + + R +RHRS
Sbjct: 276 --SSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRS 314
Score = 35.4 bits (80), Expect = 0.055
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 37 KKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCR 96
+K K +GK S K ++ + SE E+ + +K K + + S Y +
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 97 KRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRS 156
+ + S+K K+ + KSRSS +S + R RSR+ + S
Sbjct: 189 EEEDSNK------------KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
Query: 157 KRHRSRA 163
+ RSR+
Sbjct: 237 SQSRSRS 243
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 34 SDEKKPFKEKGKTAFSHSSEKHIQRQ-----------GSEPNPNKENSEETKLKAGNSTA 82
S E + + K K++ H SE+H ++ SE ++ +E K G S +
Sbjct: 67 SKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHS 126
Query: 83 GSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEI--QET 140
S +R R+RK S S + +E KKSRS + I +
Sbjct: 127 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRE-----RKKSRSRSRERKRRIRSRSR 181
Query: 141 CDAHHRGRSRACTGRSKRHRSRALGVQTP 169
+ HR R+R+ + R R R ++ P
Sbjct: 182 SRSRHRHRTRSRSRTRSRSRDRKKRIEKP 210
Score = 31.6 bits (70), Expect = 0.80
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 19/152 (12%)
Query: 31 EKGSDEKKPFKEKGKTAFS-HSSEKHIQRQGSEPNPNKENSE------------------ 71
EK S ++ KE+ + + S +S+ H R S K S+
Sbjct: 14 EKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRH 73
Query: 72 ETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTP 131
E+K K+ E + + + +++S ++ +D K + +SRS
Sbjct: 74 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 133
Query: 132 VHNSEIQETCDAHHRGRSRACTGRSKRHRSRA 163
H S +E + R R R + R R ++
Sbjct: 134 RHRSRSRERKKSRSRSRERKKSRSRSRERKKS 165
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHS-SEKHIQRQGSEPNPNKENSEETKLKAGNSTAG 83
++++ +E G D K + K SHS S +R S K++ ++ + + +
Sbjct: 100 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 159
Query: 84 SEPESSSYRENCRKRKMSSK 103
E + S R RKR++ S+
Sbjct: 160 RERKKSRSRSRERKRRIRSR 179
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 20 DQPPFQQISFTE---KGSDEKKPFKEKGKTAFSHSSEKHIQRQGS-EPNPNKENSEETKL 75
+Q PF+ + ++ K ++ KK EKG T S+K + GS NP + E K
Sbjct: 96 EQTPFRHLYTSKTHLKKAEYKKSKDEKGGTPLKKDSKK---KGGSYATNPESKQIVEEKT 152
Query: 76 KAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNS 135
K N + +SS E +K K SS+ + + K CS K S++S N+
Sbjct: 153 KRQNEADKTPLKSSHENEQSKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKNSKKT-NT 211
Query: 136 EIQET 140
E T
Sbjct: 212 EFLHT 216
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 31 EKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPN-PNKENSEETKLKAGNSTAGSEPESS 89
E K K + HSS+K +R S N ++ +E K G S + S
Sbjct: 15 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 74
Query: 90 SYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEI--QETCDAHHRG 147
+R R+RK S S + +E KKSRS + I + + HR
Sbjct: 75 RHRSRSRERKKSRSRSRERKKSRSRSRE-----RKKSRSRSRERKRRIRSRSRSRSRHRH 129
Query: 148 RSRACTGRSKRHRSRALGVQTP 169
R+R+ + R R R ++ P
Sbjct: 130 RTRSRSRTRSRSRDRKKRIEKP 151
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHS-SEKHIQRQGSEPNPNKENSEETKLKAGNSTAG 83
++++ +E G D K + K SHS S +R S K++ ++ + + +
Sbjct: 41 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 100
Query: 84 SEPESSSYRENCRKRKMSSK 103
E + S R RKR++ S+
Sbjct: 101 RERKKSRSRSRERKRRIRSR 120
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 39.7 bits (91), Expect = 0.003
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 3 KGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPF----------KEKGKTAFSHSS 52
K + PD + ++ S +P + + TE S+ KP +++ K+A S S+
Sbjct: 73 KRSASPDYNRTNSPSSAKKP--KALQHTESPSETNKPHSKSKKRHLDQEQQLKSAQSPST 130
Query: 53 EK-HIQRQGSEPNPNKENSEET-----KLKAGNSTAGSEPESSSYRENCRKRKMSSKDSC 106
K H ++ G+ + + T K +G+ + G+E S+ + K S+K C
Sbjct: 131 SKAHTRKSGATGGSRSQKRKRTESSCVKSGSGSESTGAEERSAKPTKLASKSATSAKAGC 190
Query: 107 QD-TAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSR 162
T + S S S SST + +++ D + RSR+ + S R SR
Sbjct: 191 STITDSSSAASTSSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSR 247
Score = 28.1 bits (61), Expect = 8.8
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 58 RQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQ-DTAGNCPE- 115
R S P+P + + E+ + K G S+ S + + K K+S S + +T+ P
Sbjct: 235 RSASSPSPRRSSREKEQSKTGGSSKFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSG 294
Query: 116 ---KECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIR 172
K SL + K RS +P +E+ + + + +C S+R + R
Sbjct: 295 LQAKLASLRKSTKKRSESP--PAELPSLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARR 352
Query: 173 KSLVTSVRAMSEAVYQDLAQ 192
+ + + EAV A+
Sbjct: 353 QEKMADPESNQEAVNSSAAR 372
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 38.9 bits (89), Expect = 0.005
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 21 QPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNS 80
+P F+ I+ S+ K+ FK+ F H E Q S+ + + S++ K S
Sbjct: 750 EPAFEDITLE---SERKRIFKD-----FMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRS 801
Query: 81 TAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQET 140
+GS+ + ++++ S+ + + ++ E+ S K +S H S+ E+
Sbjct: 802 RSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPES 861
Query: 141 CDAHHRGRSRACTGRSKRHRSR 162
DA + S++ R+R
Sbjct: 862 -DAEREKDKKEKDRESEKDRTR 882
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 38.5 bits (88), Expect = 0.007
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 37 KKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKL--KAGNSTAGSEPESSSYREN 94
+K G + SHS + R GS + +++ K S + S+ +S S +
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHS 261
Query: 95 CRKRKMSSKDSCQ------DTAGNCPEKECSLSLNK-KSRSSTPVHNSEIQETCDAHHRG 147
K + SKD + D G + S +K KSRS + E +E + RG
Sbjct: 262 AGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVE-EEKRGSVSRG 320
Query: 148 RSRACTGRSKRHRSRALG 165
RS+ + R R RSR+ G
Sbjct: 321 RSQEKSLRQSRSRSRSKG 338
Score = 31.6 bits (70), Expect = 0.80
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 2/132 (1%)
Query: 32 KGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSY 91
K + P KEK ++ SHS+ K + + +N++ S + + +S S
Sbjct: 243 KKEKSRSPSKEKSRSR-SHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS- 300
Query: 92 RENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRA 151
R ++R++ + + G EK S ++ S + +GR R+
Sbjct: 301 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS 360
Query: 152 CTGRSKRHRSRA 163
R RSR+
Sbjct: 361 REESRSRSRSRS 372
>gi|221316599 chromogranin B precursor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 31 EKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNP-NKENSEETKLKAGNSTAGSEPESS 89
E +E+ +KG+ S EKH++ G N E + + +K A SE ++
Sbjct: 163 EDEEEEEGENYQKGERGEDSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAA 222
Query: 90 SY-RENCRKRKMSSKDSCQDTAG--NCP-EKECSLSLNKKSRSSTPVHNSEI--QETCDA 143
+ +E R+ SS++S ++T N P E + ++S SE+ + T
Sbjct: 223 GHSQEKTHSREKSSQESGEETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPR 282
Query: 144 HHRGRSR 150
HH GRSR
Sbjct: 283 HHHGRSR 289
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 37.7 bits (86), Expect = 0.011
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 6 EDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNP 65
+D D S++ D P F+ S KGSD+ P+ + S + R+G+
Sbjct: 871 KDSDYVYPSLESDEDNPIFKSRSKKRKGSDD-APYSPTARVGPSVPRQDRPVREGT---- 925
Query: 66 NKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKK 125
+ S ET L A + + E S ++ KRK++ + P S+S
Sbjct: 926 -RVASIETGLAAAAAKLSQQEEQKSKKKKSAKRKLTPNTT-------SPSTSTSISAGTT 977
Query: 126 SRSSTPVHNSEIQET 140
S S+TP + T
Sbjct: 978 STSTTPASTTPASTT 992
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 37.7 bits (86), Expect = 0.011
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 30 TEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKA----GNSTAGSE 85
TE EKK EK + + + +G + N++++ ++ K ++AG +
Sbjct: 734 TEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRASESKKPKTEDKNSAGHK 793
Query: 86 PESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHH 145
P SS RE+ ++ KD AG P K+ + R+ + + + +
Sbjct: 794 P--SSNRESSKQSAAKEKDLLPSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKET 851
Query: 146 RGRSRACTGRSKRHRS 161
G S+ + SK+ ++
Sbjct: 852 SGSSKNSSSTSKQKKT 867
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 50 HSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDT 109
H S K Q S + +++ET + NS++ S+ + + + + +++ K+ +
Sbjct: 828 HGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEV--KEKAPSS 885
Query: 110 AGNCPEKECSLSLNKKSRS 128
+ NCP +L +K R+
Sbjct: 886 SSNCPPSAPTLDSSKPRRT 904
Score = 29.3 bits (64), Expect = 4.0
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 28 SFTEKGSDEKKPFKEKGKTAFSHSSE------KHIQRQ--GSEPNPNKENSEETKLKAGN 79
S T G K K+ K + S S+ K + R GS P+ NSE +
Sbjct: 368 SKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSRDD 427
Query: 80 STAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKE 117
S++ S ESSS ++ + S ++ + + PE E
Sbjct: 428 SSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPE 465
Score = 29.3 bits (64), Expect = 4.0
Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 37/180 (20%)
Query: 5 NEDPDLHCSS-IQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEP 63
N +P H S S D S + GSD + + S SE + Q + P
Sbjct: 410 NSEPSHHNSEGADNSRDDSSSHSGSESSSGSDSESE-------SSSSDSEANEPSQSASP 462
Query: 64 NP--------------NKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDT 109
P NK N K+ +S + P S Y++ R++ + +S DT
Sbjct: 463 EPEPPPTNKWQLDNWLNKVNPH--KVSPASSVDSNIPSSQGYKKEGREQ--GTGNSYTDT 518
Query: 110 AGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTP 169
+G K++ S+TP +S+ + RGR ++ + R +G + P
Sbjct: 519 SGP-----------KETSSATPGRDSKTIQKGSESGRGRQKSPAQSDSTTQRRTVGKKQP 567
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 37.4 bits (85), Expect = 0.015
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 39/198 (19%)
Query: 3 KGNEDPDLH-CSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGS 61
+G EDP++ S+ Q +++ EK KK K++ K F S KH + + S
Sbjct: 203 EGEEDPEVEFLKSLTTKQKQKLLRKLDRLEK----KKKKKDRKKKKFQKSRSKHKKHKSS 258
Query: 62 EPNP---------------------NKENSEETKLKAGNSTAGSEPESSSYRENCRKRK- 99
+ NKE + K + N +G S ++ +KRK
Sbjct: 259 SSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKL 318
Query: 100 ---MSSKDSCQDTAGNCP---EKECSLSLNKKS------RSSTPVHNSEIQETCDAHHRG 147
+SS ++ A P + E S +K S +S T H+ E + +
Sbjct: 319 HEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSRTHKHSPEKRGSERKEGSS 378
Query: 148 RSRACTGRSKRHRSRALG 165
RS RS+R RSR+ G
Sbjct: 379 RSHGREERSRRSRSRSPG 396
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 37.0 bits (84), Expect = 0.019
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 35 DEKKPFKEKGKTAFSHSSE-KHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRE 93
D+K+ K++ K + S S E KH R S N K + +K K S + +E
Sbjct: 414 DDKRDSKKEKKHSRSRSRERKHRSRSRSR-NAGKRSRSRSKEK-------SSKHKNESKE 465
Query: 94 NCRKRKMSSKDSCQDTAGNCPEKECSLS---LNKKSRSSTPVH---NSEIQETCDAHHRG 147
KR S D+ ++E S S K+SRS H +S+ ++ D H R
Sbjct: 466 KSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRR 525
Query: 148 RSRACTGRS--KRHRSR 162
RS++ S K+H+++
Sbjct: 526 RSQSIEQESQEKQHKNK 542
Score = 28.1 bits (61), Expect = 8.8
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 41 KEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKM 100
+EK + S++ R E +KE+ ++ + + + E + S R RK +
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRS 437
Query: 101 SSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHR 160
S+ + N ++ S S K S+ H +E +E + R S+ T ++ +
Sbjct: 438 RSR------SRNAGKRSRSRSKEKSSK-----HKNESKEKSNKRSRSGSQGRTDSVEKSK 486
Query: 161 SRALGVQTPSIRKS 174
R +PS KS
Sbjct: 487 KRE---HSPSKEKS 497
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 37.0 bits (84), Expect = 0.019
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 53 EKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGN 112
E+++ R+ + +K N E +K + G +T G RE R R+ SS++ +
Sbjct: 564 EQNVSRKDTRSEQDKCNREPSKGR-GRAT-GDGLADRHKRERSRARRASSREDGRPRKER 621
Query: 113 CPEKECSLSLNK-KSRSSTPVHN-SEIQETCDAHHRGRSRACTGRSKRHRSR 162
P K+ + + + RS++P H S + D H R RSR G + R SR
Sbjct: 622 RPHKKHAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRERRGSASRKHSR 673
Score = 28.9 bits (63), Expect = 5.2
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 52 SEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAG 111
S H + G+ + N +EE K S+ PE S + C +S
Sbjct: 499 SPAHPEADGAPKSVNGSVAEEAPCKEVQSSCRVVPEDGSPEKRCPGGVLSCIPDNNQQPK 558
Query: 112 NCPEKECSLSLNKKSRSSTPVHNSEIQETCDAH-HRGRSRA----CTGRSKRHRSRA 163
P E ++S K +RS Q+ C+ +GR RA R KR RSRA
Sbjct: 559 GIPACEQNVS-RKDTRSE--------QDKCNREPSKGRGRATGDGLADRHKRERSRA 606
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 37.0 bits (84), Expect = 0.019
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 41 KEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEP---ESSSYRENCRK 97
K KG + +++ ++ S + +K+N+ + K S E E S +E+
Sbjct: 441 KVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSSKTQASVKKEEKRSSEKSEKKESKDT 500
Query: 98 RKMSSKDSCQDTAGNCPEKECSLSLNKKSR--SSTPVHNSEIQET----CDAHHRGRSRA 151
+K+ KD D + E +K R S +P H + +T C RGR
Sbjct: 501 KKIEGKDEKNDNGASGQTSESIKKSEEKKRISSKSPGHMVILDQTKGDHCRPSRRGRYEK 560
Query: 152 CTGRSKRHRSRAL 164
GRSK +L
Sbjct: 561 IHGRSKEKERASL 573
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 37.0 bits (84), Expect = 0.019
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 41 KEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEP---ESSSYRENCRK 97
K KG + +++ ++ S + +K+N+ + K S E E S +E+
Sbjct: 459 KVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSSKTQASVKKEEKRSSEKSEKKESKDT 518
Query: 98 RKMSSKDSCQDTAGNCPEKECSLSLNKKSR--SSTPVHNSEIQET----CDAHHRGRSRA 151
+K+ KD D + E +K R S +P H + +T C RGR
Sbjct: 519 KKIEGKDEKNDNGASGQTSESIKKSEEKKRISSKSPGHMVILDQTKGDHCRPSRRGRYEK 578
Query: 152 CTGRSKRHRSRAL 164
GRSK +L
Sbjct: 579 IHGRSKEKERASL 591
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 35.8 bits (81), Expect = 0.042
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 30 TEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSE--ETKLKAGNSTAGSEPE 87
+ KG+ E + KG+ A + S P P K + + ++ KA +S+ GS
Sbjct: 1028 SSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRH 1087
Query: 88 SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRG 147
SS + +K SS S + P+K+ S S + SST + T G
Sbjct: 1088 SSP--APAQPKKESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPG 1145
Query: 148 RSRACTGRSKRHRSR 162
+SR R SR
Sbjct: 1146 KSRTSDHSLSREGSR 1160
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 35.8 bits (81), Expect = 0.042
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 31 EKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSS 90
EK K KEK + + K +R + P+P++ +S + SE S
Sbjct: 903 EKLESRSKDKKEKDECTPTRKERK--RRHSTSPSPSRSSSGRRVKSPSPKSERSERSERS 960
Query: 91 YRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSR 150
++E+ R R S KDS +D + K+SR S R RS
Sbjct: 961 HKESSRSRS-SHKDSPRDVSKKAKRSPSGSRTPKRSRRS----------------RSRSP 1003
Query: 151 ACTGRSKRHRSRA 163
+G+ R +SR+
Sbjct: 1004 KKSGKKSRSQSRS 1016
Score = 29.3 bits (64), Expect = 4.0
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 28 SFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPE 87
S + G K P + ++ S S K R S +K++ + KA S +GS
Sbjct: 936 SRSSSGRRVKSPSPKSERSERSERSHKESSRSRSS---HKDSPRDVSKKAKRSPSGSRTP 992
Query: 88 SSSYRENCRKRKMSSKDS 105
S R R K S K S
Sbjct: 993 KRSRRSRSRSPKKSGKKS 1010
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.4 bits (80), Expect = 0.055
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 32 KGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPE---- 87
+GS+E P KE K + E++ + SE + NKE+ EE + SE E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDED 551
Query: 88 -SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQE 139
S E+ +R+ +D EKE ++ K NSE ++
Sbjct: 552 CSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.4 bits (80), Expect = 0.055
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 32 KGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPE---- 87
+GS+E P KE K + E++ + SE + NKE+ EE + SE E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDED 551
Query: 88 -SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQE 139
S E+ +R+ +D EKE ++ K NSE ++
Sbjct: 552 CSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.123 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,193,782
Number of Sequences: 37866
Number of extensions: 578168
Number of successful extensions: 2445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 2113
Number of HSP's gapped (non-prelim): 476
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.