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Search of human proteins with 38093643
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
(490 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 1014 0.0
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 231 1e-60
gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 206 4e-53
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 52 2e-06
gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sa... 46 9e-05
gi|154689858 SMYD family member 5 [Homo sapiens] 44 3e-04
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 42 0.002
gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] 40 0.004
gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens] 37 0.053
gi|38505161 tudor domain containing 1 [Homo sapiens] 36 0.070
gi|13489073 egl nine homolog 1 [Homo sapiens] 35 0.15
gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 34 0.26
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 32 1.0
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 32 1.0
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 32 1.0
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 32 1.0
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 32 1.3
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 32 1.3
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 32 1.7
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 32 1.7
gi|39812492 TH1-like protein [Homo sapiens] 32 1.7
gi|116089335 BR serine/threonine kinase 2 [Homo sapiens] 32 1.7
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 31 2.2
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 31 2.2
gi|148762978 similar to CG15216-PA [Homo sapiens] 31 2.9
gi|163659858 glutamate receptor, ionotrophic, AMPA 3 isoform 2 p... 30 3.8
gi|163659856 glutamate receptor, ionotrophic, AMPA 3 isoform 1 p... 30 3.8
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 30 3.8
gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens] 30 5.0
gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens] 30 5.0
>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
Length = 490
Score = 1014 bits (2623), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE 60
MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
Sbjct: 1 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE 60
Query: 61 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG 120
KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
Sbjct: 61 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG 120
Query: 121 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN 180
LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
Sbjct: 121 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN 180
Query: 181 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
Sbjct: 181 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
Query: 241 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE 300
KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
Sbjct: 241 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE 300
Query: 301 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV 360
VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
Sbjct: 301 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV 360
Query: 361 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY 420
LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
Sbjct: 361 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY 420
Query: 421 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE 480
AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
Sbjct: 421 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE 480
Query: 481 PSPALFHKKQ 490
PSPALFHKKQ
Sbjct: 481 PSPALFHKKQ 490
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 231 bits (589), Expect = 1e-60
Identities = 130/433 (30%), Positives = 227/433 (52%), Gaps = 17/433 (3%)
Query: 9 VEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQEKLHRCGQC 68
+E F + GKGRGL+A + F D++F+ AY+ V+ + C CF R+E L +CG+C
Sbjct: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRC 68
Query: 69 KFAHYCDRTCQKDAWLNHKNECSAIKRYGKV--PNENIRLAARIMWRVEREGTGLTEGCL 126
K A YC+ CQK+ W HK ECS + +G+ P+E +RL ARI+ + + L
Sbjct: 69 KQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKL 128
Query: 127 VSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSD 186
++V + ++H++ E++ ++ D+ ++ + +F +NCNGFT+ D
Sbjct: 129 LAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIED 188
Query: 187 QRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGE 246
+ L +G IFP++ L+NH C PN V + E+RA+ +I GE
Sbjct: 189 EE-LSHLGSAIFPDVALMNHSCCPNVIVTYKG-------------TLAEVRAVQEIKPGE 234
Query: 247 ELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKD-NPKPSQEVVKEM 305
E+ SYID L +E+R +L+ Y+F C C+ C K KD + ++ + P E +++M
Sbjct: 235 EVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDM 294
Query: 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEVLSYLQ 365
++++++ +E+ +A+ E++++C EK VF D+N+YML M+ V Y+Q
Sbjct: 295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ 354
Query: 366 AFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAYAILLV 425
+E A Y ++++ Y K Y + + ++ G + G + KA AI+ V
Sbjct: 355 DWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEV 414
Query: 426 THGPSHPITKDLE 438
HG HP +++
Sbjct: 415 AHGKDHPYISEIK 427
>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
Length = 369
Score = 206 bits (524), Expect = 4e-53
Identities = 123/392 (31%), Positives = 205/392 (52%), Gaps = 32/392 (8%)
Query: 64 RCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYG-KVPNENIRLAARIMWRVEREGTGLT 122
RC QC+ A YC CQK AW +HK EC +K + P +++RL R+++++ +G
Sbjct: 2 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKL-MDGAPSE 60
Query: 123 EGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQY----ISHIFGVIN 178
L S DL++++ E++++ LR V TF + + Q S + F +
Sbjct: 61 SEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI 120
Query: 179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA 238
CN FT+ + +Q VGVG++P++ L+NH C PNC+++FN G H + LRA
Sbjct: 121 CNSFTICNAE-MQEVGVGLYPSISLLNHSCDPNCSIVFN-GPH------------LLLRA 166
Query: 239 LGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKD-DLFLGVKDNPKP 297
+ I GEELT+ Y+D L SEER++QL+ QY F+C C CQ + KD D+ G
Sbjct: 167 VRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG------- 219
Query: 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIV 357
++V KE+ +++L+KI++ ++ + +V+ +C+ + D NIY L++L
Sbjct: 220 DEQVWKEV----QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA 275
Query: 358 SEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMIC 417
+ L EEA FY R ++ Y + ++ G+ VM+ G H G +
Sbjct: 276 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 335
Query: 418 KAYAILLVTHGPSHPITKDLEAMRVQTEMELR 449
A+ I+ VTHG H + +DL + + + +R
Sbjct: 336 LAFDIMRVTHGREHSLIEDLILLLEECDANIR 367
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 181 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
G ++D R ++ + GIFP + L+NH C PN +V F +RA
Sbjct: 516 GSIVTDSRQVR-LATGIFPVISLLNHSCSPNTSVSF-------------ISTVATIRASQ 561
Query: 241 KISEGEELTVSYIDFLNVS--EERKRQLKKQYYFDCTCEHCQ 280
+I +G+E+ Y + ER+++L+ QY+FDC C CQ
Sbjct: 562 RIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQ 603
Score = 46.6 bits (109), Expect = 5e-05
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 17 KGRGLKATKEFWAADIIFAERAYSAVV---------------FDSLV---NFVCHTCFKR 58
KGR L ATK+ +++ E A+ +V+ +D+ V + CH C K
Sbjct: 243 KGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKH 302
Query: 59 QEKLHRCGQCKFAHYCDRTCQKDAW-LNHKNEC 90
C C +A YC + C + AW L H+ EC
Sbjct: 303 TLATVPCDGCSYAKYCSQECLQQAWELYHRTEC 335
>gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo
sapiens]
Length = 441
Score = 45.8 bits (107), Expect = 9e-05
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIK 94
C TC ++ RC CK YCD+TCQK W HK C +K
Sbjct: 320 CTTCGEKGAS-KRCSVCKMVIYCDQTCQKTHWFTHKKICKNLK 361
>gi|154689858 SMYD family member 5 [Homo sapiens]
Length = 418
Score = 43.9 bits (102), Expect = 3e-04
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 190 LQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELT 249
L G G+F NH C PN F N + + AL I GEE+
Sbjct: 300 LNCEGSGLFVLQSCCNHSCVPNAETSFPENN-----------FLLHVTALEDIKPGEEIC 348
Query: 250 VSYIDFLNVSEERKRQ---LKKQYYFDCTCEHC 279
+SY+D R + L++ Y F C+C C
Sbjct: 349 ISYLDCCQRERSRHSRHKILRENYLFVCSCPKC 381
Score = 29.6 bits (65), Expect = 6.5
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 8 NVEV-FTAEGKGRGLKATKEFWAADIIFAERAYSAVVF--DSLVNF-VCHTCFKRQEKLH 63
+VEV F + KG+GL AT+ + IF ER A F ++L + C C + EK
Sbjct: 22 SVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFLWNALYRYRACDHCLRALEKAE 81
Query: 64 RCGQ 67
Q
Sbjct: 82 ENAQ 85
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 41.6 bits (96), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 52 CHTCFKRQ----EKLHRCGQCKFAHYCDRTCQKDAWLNHKNEC 90
C C ++Q EKL RC +C YC++ CQK W +HK C
Sbjct: 791 CAACQRKQQSEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLC 833
>gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]
Length = 227
Score = 40.4 bits (93), Expect = 0.004
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKR 95
C K+ + + CG+C+ A YC CQ+ W HK C KR
Sbjct: 174 CTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKR 217
>gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens]
Length = 462
Score = 36.6 bits (83), Expect = 0.053
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYID-FLNVSEER 262
+NHDC PNC + +GN VK L I G+E+T Y + F E
Sbjct: 181 INHDCKPNCKFVPADGNAACVK------------VLRDIEPGDEVTCFYGEGFFGEKNEH 228
Query: 263 KRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEK-IDKARS 321
C C C++K + ++ P + + K ++ +K L++ +D
Sbjct: 229 -----------CECHTCERKGEGAFRTRPREPALPPRPLDKYQLRETKRRLQQGLDSGSR 277
Query: 322 EGL 324
+GL
Sbjct: 278 QGL 280
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 36.2 bits (82), Expect = 0.070
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 64 RCGQCKFAHYCDRTCQKDAWLNHKNECSAIK-RYGKVPNEN 103
RC QCK +YC CQ+ W H C ++ + K+ N++
Sbjct: 180 RCSQCKQTYYCSTACQRRDWSAHSIVCRPVQPNFHKLENKS 220
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 35.0 bits (79), Expect = 0.15
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNEC 90
C C K E L RC +C+ + YC + Q+ W HK C
Sbjct: 21 CELCGK-MENLLRCSRCRSSFYCCKEHQRQDWKKHKLVC 58
>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
Length = 460
Score = 34.3 bits (77), Expect = 0.26
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 62 LHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIK 94
L C +C+ +YC CQK W H+ C ++
Sbjct: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY-IDFLNVSEER 262
+NH C PNC E +K + R+ L A+ I G ELT +Y +D L +
Sbjct: 1140 MNHSCQPNC---------ETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV 1190
Query: 263 KRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSE 322
R C +C FLG D PK S + E + K T +K + R++
Sbjct: 1191 CR---------CGASNCSG------FLG--DRPKTSTTLSSE--EKGKKTKKKTRRRRAK 1231
Query: 323 G 323
G
Sbjct: 1232 G 1232
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY-IDFLNVSEER 262
+NH C PNC E +K + R+ L A+ I G ELT +Y +D L +
Sbjct: 1140 MNHSCQPNC---------ETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV 1190
Query: 263 KRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSE 322
R C +C FLG D PK S + E + K T +K + R++
Sbjct: 1191 CR---------CGASNCSG------FLG--DRPKTSTTLSSE--EKGKKTKKKTRRRRAK 1231
Query: 323 G 323
G
Sbjct: 1232 G 1232
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY-IDFLNVSEER 262
+NH C PNC E +K + R+ L A+ I G ELT +Y +D L +
Sbjct: 1140 MNHSCQPNC---------ETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV 1190
Query: 263 KRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSE 322
R C +C FLG D PK S + E + K T +K + R++
Sbjct: 1191 CR---------CGASNCSG------FLG--DRPKTSTTLSSE--EKGKKTKKKTRRRRAK 1231
Query: 323 G 323
G
Sbjct: 1232 G 1232
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY-IDFLNVSEER 262
+NH C PNC E +K + R+ L A+ I G ELT +Y +D L +
Sbjct: 1140 MNHSCQPNC---------ETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV 1190
Query: 263 KRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSE 322
R C +C FLG D PK S + E + K T +K + R++
Sbjct: 1191 CR---------CGASNCSG------FLG--DRPKTSTTLSSE--EKGKKTKKKTRRRRAK 1231
Query: 323 G 323
G
Sbjct: 1232 G 1232
>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
sapiens]
Length = 742
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 44 FDSLVNFVCHTCFKR--QEKLHRCGQCKFAHYCDRTCQKDAW 83
F SL CH C + + KL C QC YC C + W
Sbjct: 305 FASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADW 346
>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
sapiens]
Length = 703
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 44 FDSLVNFVCHTCFKR--QEKLHRCGQCKFAHYCDRTCQKDAW 83
F SL CH C + + KL C QC YC C + W
Sbjct: 305 FASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADW 346
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 59 QEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRV 114
+E + C C +YC CQ+ W +H++ C V + + +A +M +V
Sbjct: 509 REAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAV-TVQADEVHVAESVMEKV 563
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 59 QEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRV 114
+E + C C +YC CQ+ W +H++ C V + + +A +M +V
Sbjct: 370 REAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAV-TVQADEVHVAESVMEKV 424
>gi|39812492 TH1-like protein [Homo sapiens]
Length = 590
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIV 357
SQ V E ++ K L+++ S G VV R+CLEK DT+I ++R V
Sbjct: 482 SQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEK-----LDTDISLIRY--FV 534
Query: 358 SEVLSYL 364
+EVL +
Sbjct: 535 TEVLDVI 541
>gi|116089335 BR serine/threonine kinase 2 [Homo sapiens]
Length = 668
Score = 31.6 bits (70), Expect = 1.7
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 275 TCEHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKI-----DKARSEGLYHEVV 329
T EH QK + ++G K+ P+P Q + +++ S +LE I D S G + +
Sbjct: 260 TLEHIQKHI---WYIGGKNEPEPEQPIPRKVQIRSLPSLEDIDPDVLDSMHSLGCFRDRN 316
Query: 330 KLCRECLEKQE 340
KL ++ L ++E
Sbjct: 317 KLLQDLLSEEE 327
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 31.2 bits (69), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 177 INCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNC--TVIFNNGNHEAVKSMFHTQMRI 234
I C F + D + A G +NH C PNC VI +G Q I
Sbjct: 3880 IGCYMFRIDDSEVVDATMHGNAARF--INHSCEPNCYSRVINIDG-----------QKHI 3926
Query: 235 ELRALGKISEGEELTVSY 252
+ A+ KI GEELT Y
Sbjct: 3927 VIFAMRKIYRGEELTYDY 3944
>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
Length = 440
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNEC 90
C C K RC +C+ YC R CQ W H C
Sbjct: 394 CAYCSAEASK--RCSRCQNEWYCCRECQVKHWEKHGKTC 430
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 30.8 bits (68), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 65 CGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKV 99
C C + +YC R C+++ W HK C YG+V
Sbjct: 686 CHSC-YTYYCSRLCRREDWDAHKARCV----YGRV 715
>gi|163659858 glutamate receptor, ionotrophic, AMPA 3 isoform 2
precursor [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 201 LGLVNHDCWPNCTVIFNNGNHEAV-----KSMFHTQMRIELRALGKISEGEELTVSYIDF 255
L L+ H W +++ ++ ++ ++ R++G I + +E F
Sbjct: 150 LSLLGHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQE-------F 202
Query: 256 LNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLG 290
+ EE R+ +K+Y DC E L+ + LG
Sbjct: 203 RRIIEEMDRRQEKRYLIDCEVERINTILEQVVILG 237
>gi|163659856 glutamate receptor, ionotrophic, AMPA 3 isoform 1
precursor [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 201 LGLVNHDCWPNCTVIFNNGNHEAV-----KSMFHTQMRIELRALGKISEGEELTVSYIDF 255
L L+ H W +++ ++ ++ ++ R++G I + +E F
Sbjct: 150 LSLLGHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQE-------F 202
Query: 256 LNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLG 290
+ EE R+ +K+Y DC E L+ + LG
Sbjct: 203 RRIIEEMDRRQEKRYLIDCEVERINTILEQVVILG 237
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 30.4 bits (67), Expect = 3.8
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 113 RVEREGTGL-TEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYIS 171
+ ER G GL T+ + + + +V +EE+ LR+ +
Sbjct: 1151 KTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKR-------------------A 1191
Query: 172 HIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQ 231
H V N T++ R + A G + +NH C PNC E K +
Sbjct: 1192 HENSVTNFYMLTVTKDRIIDAGPKGNYSRF--MNHSCNPNC---------ETQKWTVNGD 1240
Query: 232 MRIELRALGKISEGEELTVSY 252
+R+ L AL I G ELT +Y
Sbjct: 1241 VRVGLFALCDIPAGMELTFNY 1261
>gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens]
Length = 618
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 323 GLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEVLSYLQAFEEASFYARRMVDGYM 382
G Y E LC+ LE +E V + + + L+ ++ + +EE +Y +R ++ Y
Sbjct: 311 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 370
Query: 383 KLYHPNN 389
P++
Sbjct: 371 TKLGPDD 377
>gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]
Length = 573
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 323 GLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEVLSYLQAFEEASFYARRMVDGYM 382
G Y E LC+ LE +E V + + + L+ ++ + +EE +Y +R ++ Y
Sbjct: 311 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 370
Query: 383 KLYHPNN 389
P++
Sbjct: 371 TKLGPDD 377
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,158,477
Number of Sequences: 37866
Number of extensions: 793541
Number of successful extensions: 2429
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2379
Number of HSP's gapped (non-prelim): 70
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.