Guide to the Human Genome
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Name: RNF25 Sequence: fasta or formatted (459aa) NCBI GI: 34878787
Description:

ring finger protein 25

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         32           3
 C cysteine            2.4         11           1
 D aspartate           3.1         14           1
 E glutamate          10.0         46           2
 F phenylalanine       1.1          5           1
 G glycine             7.4         34           2
 H histidine           3.1         14           1
 I isoleucine          3.9         18           2
 K lysine              4.8         22           1
 L leucine             8.1         37           1
 M methionine          1.3          6           1
 N asparagine          1.3          6           2
 P proline            11.1         51           3
 Q glutamine           8.7         40           2
 R arginine            6.8         31           2
 S serine              6.3         29           2
 T threonine           4.8         22           2
 V valine              4.6         21           1
 W tryptophan          1.1          5           1
 Y tyrosine            3.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 25 
EIF2AK4               0.038   eukaryotic translation initiation factor 2 alpha kin...
WDR33                 0.032   WD repeat domain 33 isoform 1 
EP300                 0.028   E1A binding protein p300 
PRB4                  0.026   proline-rich protein BstNI subfamily 4 precursor [Ho...
RWDD1                 0.026   RWD domain containing 1 isoform a 
PRB3                  0.026   proline-rich protein BstNI subfamily 3 precursor [H...
FMN2                  0.025   formin 2 
ATXN7L2               0.025   ataxin 7-like 2 
SFPQ                  0.024   splicing factor proline/glutamine rich (polypyrimidin...
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
MED15                 0.022   mediator complex subunit 15 isoform a 
PRRT2                 0.022   proline-rich transmembrane protein 2 
MLL2                  0.022   myeloid/lymphoid or mixed-lineage leukemia 2 
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 1 pre...
CPSF6                 0.020   cleavage and polyadenylation specific factor 6, 68 ...
AFF1                  0.020   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
COLEC12               0.020   collectin sub-family member 12 
COL4A4                0.020   alpha 4 type IV collagen precursor 
MED15                 0.020   mediator complex subunit 15 isoform b 
PCLO                  0.020   piccolo isoform 2 
PCLO                  0.020   piccolo isoform 1 
WASL                  0.019   Wiskott-Aldrich syndrome gene-like protein 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 7 
RBM33                 0.019   RNA binding motif protein 33 
SYN1                  0.019   synapsin I isoform Ia 
SYN1                  0.019   synapsin I isoform Ib 
FSCB                  0.019   fibrous sheath CABYR binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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