BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|33946295 zinc finger protein 326 isoform 3 [Homo sapiens] (70 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|33946295 zinc finger protein 326 isoform 3 [Homo sapiens] 159 4e-40 gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens] 159 4e-40 gi|119395750 keratin 1 [Homo sapiens] 38 0.002 gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 36 0.006 gi|55956899 keratin 9 [Homo sapiens] 36 0.007 gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 35 0.010 gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 35 0.010 gi|4502847 cold inducible RNA binding protein [Homo sapiens] 34 0.022 gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 34 0.022 gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 34 0.022 gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 34 0.028 gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 34 0.028 gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 34 0.028 gi|239747524 PREDICTED: similar to serum response factor-related... 33 0.048 gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 33 0.048 gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 33 0.048 gi|4504733 insulin receptor substrate 4 [Homo sapiens] 33 0.063 gi|109452587 family with sequence similarity 98, member B isofor... 33 0.063 gi|195972866 keratin 10 [Homo sapiens] 32 0.082 gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 32 0.082 gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 32 0.11 gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 32 0.14 gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 31 0.18 gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 31 0.18 gi|167466169 growth arrest-specific 1 [Homo sapiens] 30 0.41 gi|57864582 hornerin [Homo sapiens] 30 0.53 gi|62122917 filaggrin family member 2 [Homo sapiens] 30 0.53 gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 30 0.53 gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 30 0.53 gi|153945796 keratin associated protein 6-3 [Homo sapiens] 30 0.53 >gi|33946295 zinc finger protein 326 isoform 3 [Homo sapiens] Length = 70 Score = 159 bits (402), Expect = 4e-40 Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD 60 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD Sbjct: 1 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD 60 Query: 61 NHSGGGGGSR 70 NHSGGGGGSR Sbjct: 61 NHSGGGGGSR 70 >gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens] Length = 582 Score = 159 bits (402), Expect = 4e-40 Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD 60 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD Sbjct: 1 MDFEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMD 60 Query: 61 NHSGGGGGSR 70 NHSGGGGGSR Sbjct: 61 NHSGGGGGSR 70 >gi|119395750 keratin 1 [Homo sapiens] Length = 644 Score = 37.7 bits (86), Expect = 0.002 Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 13 RNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 R +Y G G G GSYG GHGSYG S Y S G S GG GS Sbjct: 549 RGSY-GSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGS 604 Score = 30.8 bits (68), Expect = 0.24 Identities = 23/52 (44%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Query: 18 GFNGMDRDYGPGSYG-GMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G G G GSYG G G GSYG S SYG SGGGGG Sbjct: 526 GSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYG----SGGGGG 573 Score = 27.7 bits (60), Expect = 2.0 Identities = 16/38 (42%), Positives = 16/38 (42%) Query: 32 GGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 GG R G G YG S SYG GGG GS Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGS 551 >gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens] Length = 372 Score = 36.2 bits (82), Expect = 0.006 Identities = 28/65 (43%), Positives = 28/65 (43%), Gaps = 15/65 (23%) Query: 16 YQGFNGMDRDYGPGS--YGGMDRDYGHG---------SYGGQRSMDSYLNQSYGMDNHSG 64 Y GF G D YG G Y G R YG G YGG S DSY N G G Sbjct: 244 YNGF-GNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN---GGGGGFG 299 Query: 65 GGGGS 69 GG GS Sbjct: 300 GGSGS 304 >gi|55956899 keratin 9 [Homo sapiens] Length = 623 Score = 35.8 bits (81), Expect = 0.007 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 4 EDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYG----HGSYGGQRSMDSYLNQSYGM 59 ED + A + G G YG GS GG YG G YGG SYG Sbjct: 463 EDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGG 522 Query: 60 DNHSGGGGG 68 + SGGG G Sbjct: 523 GSGSGGGSG 531 Score = 32.3 bits (72), Expect = 0.082 Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 27 GPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G GS GG YG GS G S Y S G HSGG GG Sbjct: 509 GSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGG--GHSGGSGG 548 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYG---------HGSYGGQRSMDSYLNQSYGMDNHSGGG 66 + G +G + G GS GG YG GS+GG SYG + G Sbjct: 550 HSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGS 609 Query: 67 GG 68 GG Sbjct: 610 GG 611 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/43 (39%), Positives = 19/43 (44%) Query: 27 GPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 G GS GG +G GS G S SY + G GGGS Sbjct: 575 GSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGS 617 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 17 QGFNGMDRDYGPGSYGGMDRDYGHGSYGGQ-------RSMDSYLNQSYGMDNHSGGGGG 68 +G +G G GS GG YG GS GG S S N G + G GGG Sbjct: 513 RGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGG 571 Score = 26.2 bits (56), Expect = 5.9 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 29 GSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G +GG R +G S GG S + G SGGG G Sbjct: 88 GGFGGGSRGFGGASGGGYSSSGGF---GGGFGGGSGGGFG 124 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGH-GSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 GF G R +G S GG G G +GG G G GGG+ Sbjct: 89 GFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGA 141 Score = 25.8 bits (55), Expect = 7.7 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 27 GPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGG--GGGS 69 G G GG +YG GS G S Y S G SGG GGGS Sbjct: 547 GGGHSGGSGGNYGGGSGSGGGSGGGYGGGS-GSRGGSGGSHGGGS 590 >gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens] Length = 305 Score = 35.4 bits (80), Expect = 0.010 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G+N G SYGG D G G +G S SYG GGGGG Sbjct: 230 GYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQS----SYGPMKSGGGGGG 276 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 27 GPGSYGGMDRD-YGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G G GG D++ G GG S Y G N GGGGG Sbjct: 197 GRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGG 239 >gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens] Length = 378 Score = 35.4 bits (80), Expect = 0.010 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Query: 16 YQGFNGMDRDYG-------PGSYGGMDRDYGH--GSYGGQRSMDSY-LNQSYGMDNHSGG 65 Y GF G +YG G YGG YG+ G YGG D Y ++G N+ GG Sbjct: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGG 326 Query: 66 G 66 G Sbjct: 327 G 327 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 16/70 (22%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQ---------------RSMDSYLNQSYGMD 60 Y G+N ++G G+YGG G+Y GQ RS S YG Sbjct: 309 YDGYNE-GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 367 Query: 61 NHSGGGGGSR 70 SGG G R Sbjct: 368 GGSGGYGSRR 377 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Query: 21 GMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G R G GS M R G GG G + GGGGGSR Sbjct: 211 GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFG---GRGGYGGGGGGSR 257 >gi|4502847 cold inducible RNA binding protein [Homo sapiens] Length = 172 Score = 34.3 bits (77), Expect = 0.022 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Query: 13 RNTYQGFNGMDRDYGPGSYGGMDRDYG-------HGSYGGQRSMDSYLNQSYGMDNHSGG 65 R ++G G R + S GG DR YG G YGG R S +QS G + S G Sbjct: 101 RGFFRGGRGRGRGF---SRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSG 157 Query: 66 G 66 G Sbjct: 158 G 158 >gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo sapiens] Length = 898 Score = 34.3 bits (77), Expect = 0.022 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 21 GMDRDYGPGSYGG-MDRDYGHGSYG-GQRSMDSYLNQSYGMDNHS----GGGGG 68 G R +G ++GG M+ G+GSYG G S + +Q Y HS GGGGG Sbjct: 656 GRGRGFGGANHGGYMNAGAGYGSYGYGGNSATAGYSQFYSNGGHSGNASGGGGG 709 Score = 30.8 bits (68), Expect = 0.24 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 6 DYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQ--SYGMDNHS 63 +Y+ S R+ + Y PGS+GG YG GS GG SY + Y N++ Sbjct: 812 NYSGSGGRSGGNSYGSGGASYNPGSHGG----YGGGSGGG----SSYQGKQGGYSQSNYN 863 Query: 64 GGGGG 68 G G Sbjct: 864 SPGSG 868 Score = 30.0 bits (66), Expect = 0.41 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 14 NTYQGFNGMDRDYG-PGSYGGMDRDY----GHGSYGGQRSMDSYLN--QSYGMDNHSGGG 66 N QG Y PG GG D +Y + GG+ +SY + SY +H G G Sbjct: 782 NHGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYG 841 Query: 67 GGS 69 GGS Sbjct: 842 GGS 844 >gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo sapiens] Length = 894 Score = 34.3 bits (77), Expect = 0.022 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 21 GMDRDYGPGSYGG-MDRDYGHGSYG-GQRSMDSYLNQSYGMDNHS----GGGGG 68 G R +G ++GG M+ G+GSYG G S + +Q Y HS GGGGG Sbjct: 652 GRGRGFGGANHGGYMNAGAGYGSYGYGGNSATAGYSQFYSNGGHSGNASGGGGG 705 Score = 30.8 bits (68), Expect = 0.24 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 6 DYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQ--SYGMDNHS 63 +Y+ S R+ + Y PGS+GG YG GS GG SY + Y N++ Sbjct: 808 NYSGSGGRSGGNSYGSGGASYNPGSHGG----YGGGSGGG----SSYQGKQGGYSQSNYN 859 Query: 64 GGGGG 68 G G Sbjct: 860 SPGSG 864 Score = 30.0 bits (66), Expect = 0.41 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 14 NTYQGFNGMDRDYG-PGSYGGMDRDY----GHGSYGGQRSMDSYLN--QSYGMDNHSGGG 66 N QG Y PG GG D +Y + GG+ +SY + SY +H G G Sbjct: 778 NHGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYG 837 Query: 67 GGS 69 GGS Sbjct: 838 GGS 840 >gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] Length = 589 Score = 33.9 bits (76), Expect = 0.028 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 18 GFNGMDRDYGP---GSYGGMDRDYG--HGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G+ G YG G YGG YG G YGG R YG D GG GG R Sbjct: 475 GYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDR 532 Score = 33.5 bits (75), Expect = 0.037 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYL----NQSYGMDNHSGGGGGSR 70 G+ G YG G GG D G YGG R S + YG D GG GG R Sbjct: 504 GYGGDRGGYG-GDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 559 Score = 31.2 bits (69), Expect = 0.18 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 Y+G G D G YGG D G YGG RS Y D GG GG R Sbjct: 402 YRGRGGRGGDRG--GYGG---DRSGGGYGGDRSSGG----GYSGDRSGGGYGGDR 447 Score = 29.3 bits (64), Expect = 0.70 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSY---LNQSYGMDNHSGGGGGSR 70 G G DR G GG D G YGG RS Y YG D GG GG R Sbjct: 422 GGYGGDRSSG----GGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGD-RGGGYGGDR 472 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 7 YTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGG 66 Y R Y G G YG GG D G YGG R YG D GG Sbjct: 519 YGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR------GGGYGGDR--GGY 570 Query: 67 GG 68 GG Sbjct: 571 GG 572 Score = 28.5 bits (62), Expect = 1.2 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 10/50 (20%) Query: 17 QGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGG 66 +G+ G G G GG DR G YGG RS YG D SGGG Sbjct: 394 RGYGGERGYRGRGGRGG-DR----GGYGGDRS-----GGGYGGDRSSGGG 433 Score = 28.1 bits (61), Expect = 1.6 Identities = 25/54 (46%), Positives = 26/54 (48%), Gaps = 11/54 (20%) Query: 17 QGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 +G G DR G G YGG DR G YGG RS YG D GG GG R Sbjct: 525 RGGYGGDRGGGSG-YGG-DRS---GGYGGDRS-----GGGYGGD-RGGGYGGDR 567 Score = 27.3 bits (59), Expect = 2.7 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 3 FEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNH 62 +E+ S + Y GS GG Y YG Q DSY QS G D H Sbjct: 67 YENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQ---DSYDQQS-GYDQH 122 Query: 63 SG 64 G Sbjct: 123 QG 124 >gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] Length = 592 Score = 33.9 bits (76), Expect = 0.028 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 18 GFNGMDRDYGP---GSYGGMDRDYG--HGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G+ G YG G YGG YG G YGG R YG D GG GG R Sbjct: 478 GYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDR 535 Score = 33.5 bits (75), Expect = 0.037 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYL----NQSYGMDNHSGGGGGSR 70 G+ G YG G GG D G YGG R S + YG D GG GG R Sbjct: 507 GYGGDRGGYG-GDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 562 Score = 31.2 bits (69), Expect = 0.18 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 Y+G G D G YGG D G YGG RS Y D GG GG R Sbjct: 405 YRGRGGRGGDRG--GYGG---DRSGGGYGGDRSSGG----GYSGDRSGGGYGGDR 450 Score = 29.3 bits (64), Expect = 0.70 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSY---LNQSYGMDNHSGGGGGSR 70 G G DR G GG D G YGG RS Y YG D GG GG R Sbjct: 425 GGYGGDRSSG----GGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGD-RGGGYGGDR 475 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 7 YTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGG 66 Y R Y G G YG GG D G YGG R YG D GG Sbjct: 522 YGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR------GGGYGGDR--GGY 573 Query: 67 GG 68 GG Sbjct: 574 GG 575 Score = 28.5 bits (62), Expect = 1.2 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 10/50 (20%) Query: 17 QGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGG 66 +G+ G G G GG DR G YGG RS YG D SGGG Sbjct: 397 RGYGGERGYRGRGGRGG-DR----GGYGGDRS-----GGGYGGDRSSGGG 436 Score = 28.1 bits (61), Expect = 1.6 Identities = 25/54 (46%), Positives = 26/54 (48%), Gaps = 11/54 (20%) Query: 17 QGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 +G G DR G G YGG DR G YGG RS YG D GG GG R Sbjct: 528 RGGYGGDRGGGSG-YGG-DRS---GGYGGDRS-----GGGYGGD-RGGGYGGDR 570 Score = 27.3 bits (59), Expect = 2.7 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 3 FEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNH 62 +E+ S + Y GS GG Y YG Q DSY QS G D H Sbjct: 70 YENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQ---DSYDQQS-GYDQH 125 Query: 63 SG 64 G Sbjct: 126 QG 127 >gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] Length = 391 Score = 33.9 bits (76), Expect = 0.028 Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 17/81 (20%) Query: 6 DYTHSACRNTY--QGFN-----GMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLN--QS 56 DY HS+ R+ Y +G++ G DRDY GG RD + SYG RS S Sbjct: 245 DYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD-SYESYGNSRSAPPTRGPPPS 303 Query: 57 YG----MDNHSG---GGGGSR 70 YG D++S G GGSR Sbjct: 304 YGGSSRYDDYSSSRDGYGGSR 324 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 24 RDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQ-SYGMD----NHSGGG 66 RDY P RDYGH S Y ++ YG D +H GG Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGG 279 >gi|239747524 PREDICTED: similar to serum response factor-related protein C4 [Homo sapiens] Length = 434 Score = 33.1 bits (74), Expect = 0.048 Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 15/65 (23%) Query: 16 YQGFNGMDRDYGPGS--YGGMDRDYG-----HGS----YGGQRSMDSYLNQSYGMDNHSG 64 Y GF G D YG G Y G R YG +GS YGG S +SY N G G Sbjct: 51 YNGF-GNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNN---GGGGSFG 106 Query: 65 GGGGS 69 GG GS Sbjct: 107 GGSGS 111 >gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens] Length = 346 Score = 33.1 bits (74), Expect = 0.048 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 29 GSYGGMDRDYGHGSYG-GQRSMDSYLNQSYGMDNHSGGGGG 68 G YGG D G+ +YG G D + GM H GG G Sbjct: 145 GGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAG 185 >gi|56699482 hypothetical protein LOC25940 [Homo sapiens] Length = 518 Score = 33.1 bits (74), Expect = 0.048 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%) Query: 7 YTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGG 66 Y HS+ Y G G ++ G G GG Y HG GG R +Q D SGGG Sbjct: 343 YEHSS----YGGRGGHEQGGGRGGRGG----YDHGGRGGGRGNK---HQGGWTDGGSGGG 391 Query: 67 GG 68 GG Sbjct: 392 GG 393 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 13/68 (19%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYGH--GSYGGQRSMDSYLNQ-----SYGMDN------H 62 YQ D + PG Y G G+ G YGG ++ SY Y DN H Sbjct: 394 YQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGH 453 Query: 63 SGGGGGSR 70 G GG R Sbjct: 454 HGDRGGGR 461 >gi|4504733 insulin receptor substrate 4 [Homo sapiens] Length = 1257 Score = 32.7 bits (73), Expect = 0.063 Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 12 CRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 C QG G G GS GG GHGS GGQ D + G +SGGG GS Sbjct: 545 CSRDGQGTAG-----GHGSGGGQRPGGGHGSGGGQGPGDGH---GSGGGKNSGGGKGS 594 Score = 28.9 bits (63), Expect = 0.91 Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 12 CRNTYQGFNGMDRDYGPGSYG------GMDRDYGHGSYGGQR---SMDSYLNQSYGMDNH 62 C QG G G GS G G GHGS GGQR S Q G D H Sbjct: 522 CSGEGQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPG-DGH 580 Query: 63 SGGGG 67 GGG Sbjct: 581 GSGGG 585 >gi|109452587 family with sequence similarity 98, member B isoform 1 [Homo sapiens] Length = 433 Score = 32.7 bits (73), Expect = 0.063 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G G G G YGG G G YGG+ D Y G GGGGG R Sbjct: 380 GGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPY-GGGGGGGGGGGGGGGYR 431 Score = 31.6 bits (70), Expect = 0.14 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGHGSYGGQ---RSMDSYLNQSYGMDNHSGGGGG 68 G G +G G GG G G YGG+ Y + YG D + GGGGG Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYG-DPYGGGGGG 420 >gi|195972866 keratin 10 [Homo sapiens] Length = 584 Score = 32.3 bits (72), Expect = 0.082 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 26 YGPGSYGGMDRDYGH---------GSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 YG GS GG GH G YGG S YG + SGG GGS Sbjct: 473 YGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGS 525 Score = 30.0 bits (66), Expect = 0.41 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 27 GPGSYGGMDRDYGH-GSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 G G +GG YG G +GG SY + S+G GGGS Sbjct: 63 GGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGS 106 Score = 29.6 bits (65), Expect = 0.53 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 16 YQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 Y G G GSYG +G GSYGG S+ S+G + GGG G Sbjct: 74 YGGLGGFGGGSFRGSYGSSS--FG-GSYGGSFGGGSFGGGSFGGGSFGGGGFG 123 Score = 29.3 bits (64), Expect = 0.70 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Query: 26 YGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGG 65 YG GS GG YG GS GG S YG + SGG Sbjct: 530 YGGGSSGGGGGGYGGGSSGGGSSSGG----GYGGGSSSGG 565 Score = 28.9 bits (63), Expect = 0.91 Identities = 15/43 (34%), Positives = 18/43 (41%) Query: 26 YGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 YG GS GG G+G + YG + GGGGG Sbjct: 499 YGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGG 541 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 27 GPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 G GS+GG YG GS GG S + +G + G GGGS Sbjct: 465 GGGSFGG---GYGGGSSGGGSSGGGH-GGGHGGSSGGGYGGGS 503 Score = 26.2 bits (56), Expect = 5.9 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 18 GFNGMDRDYGPGSYGGMDRDYGH---GSYGGQRSMDSYLNQSYGMDNHSGGGG 67 G+ G G G YGG G G YGG S + + S G S G Sbjct: 529 GYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKG 581 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 7/41 (17%) Query: 29 GSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGS 69 G YGG G G YGG S G + G GGGS Sbjct: 528 GGYGGGSSGGGGGGYGGGSS-------GGGSSSGGGYGGGS 561 >gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo sapiens] Length = 392 Score = 32.3 bits (72), Expect = 0.082 Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 6 DYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYG-HGSYGGQRS-MDSY---LNQSYGMD 60 DY HS+ R+ DRD YGG DRDYG H S G R +SY + G Sbjct: 242 DYGHSSVRDDCPLRGYSDRD----GYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRG 297 Query: 61 NHSGGGGGSR 70 GGG R Sbjct: 298 TPPSYGGGGR 307 >gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sapiens] Length = 1067 Score = 32.0 bits (71), Expect = 0.11 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 5 DDYT--HSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNH 62 D YT +S R+++ G YG G + +YGG R ++S N S+G + Sbjct: 884 DHYTEAYSRGRDSFSNSYGRSDHYGRGGCYEEYQGRSPNAYGGGRGLNS-SNNSHGRSHR 942 Query: 63 SGGGG 67 GGGG Sbjct: 943 YGGGG 947 Score = 28.1 bits (61), Expect = 1.6 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 24/87 (27%) Query: 5 DDYTHSACRNTYQGFNGMDRDY---GPGSYGG----MDRDYGHGS---YGGQRSMDSYLN 54 D +++S R+ + G G +Y P +YGG + HG YGG + Y Sbjct: 895 DSFSNSYGRSDHYGRGGCYEEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRG 954 Query: 55 --------------QSYGMDNHSGGGG 67 +SYG+ + GGGG Sbjct: 955 PSPDAHSGGRDSSIKSYGLSDRYGGGG 981 >gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens] Length = 589 Score = 31.6 bits (70), Expect = 0.14 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 29 GSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGG 68 G GG R YG GS GG+ L D H GGGGG Sbjct: 39 GGGGGGGRYYGGGSEGGR--APKRLKTDNAGDQHGGGGGG 76 >gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 31.2 bits (69), Expect = 0.18 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 6 DYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYG 58 DY HS+ R+ Y R YG G DRDY GG DSY +SYG Sbjct: 245 DYGHSSSRDDYPS-----RGYGDRDGYGRDRDYSDHPSGGS-YRDSY--ESYG 289 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Query: 24 RDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYG 58 RDY P RDYGH S S D Y ++ YG Sbjct: 232 RDYAPPPRDYTYRDYGHSS-----SRDDYPSRGYG 261 >gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 31.2 bits (69), Expect = 0.18 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 6 DYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYG 58 DY HS+ R+ Y R YG G DRDY GG DSY +SYG Sbjct: 245 DYGHSSSRDDYPS-----RGYGDRDGYGRDRDYSDHPSGGS-YRDSY--ESYG 289 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Query: 24 RDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYG 58 RDY P RDYGH S S D Y ++ YG Sbjct: 232 RDYAPPPRDYTYRDYGHSS-----SRDDYPSRGYG 261 >gi|167466169 growth arrest-specific 1 [Homo sapiens] Length = 345 Score = 30.0 bits (66), Expect = 0.41 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 33 GMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G + G GS G +D Y ++ Y + +GG GG + Sbjct: 245 GAELGNGPGSSGSDGGLDDYYDEDYDDEQRTGGAGGEQ 282 >gi|57864582 hornerin [Homo sapiens] Length = 2850 Score = 29.6 bits (65), Expect = 0.53 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 6 DYTHSACRNTYQGFNGMDRDYGP-GSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSG 64 D+ HS+ + +G GP GS G +GH S GQ S Y G + SG Sbjct: 668 DFGHSSSYGQHGSGSGWSSSNGPHGSVSGQSSGFGHKSGSGQSS--GYSQHGSGSSHSSG 725 Score = 28.5 bits (62), Expect = 1.2 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 16 YQGFNGMDRDYGP-GSYGGMDRDYG-HGSYGGQRSMDSYLNQSYGMDNHSG-GGGGSR 70 ++ +G Y GS G YG HGS GQ S S G +H G G GSR Sbjct: 1170 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSR 1227 Score = 28.5 bits (62), Expect = 1.2 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 16 YQGFNGMDRDYGP-GSYGGMDRDYG-HGSYGGQRSMDSYLNQSYGMDNHSG-GGGGSR 70 ++ +G Y GS G YG HGS GQ S S G +H G G GSR Sbjct: 2580 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSR 2637 Score = 28.5 bits (62), Expect = 1.2 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 10/51 (19%) Query: 29 GSYGGMDRDYG-HGSYGGQRSMDSYLNQSYGMD---------NHSGGGGGS 69 GS G YG HGS GQ S S G D NH GG GS Sbjct: 2776 GSGSGQSSSYGQHGSGSGQSSGYSQHGSGSGQDGYSYCKGGSNHDGGSSGS 2826 >gi|62122917 filaggrin family member 2 [Homo sapiens] Length = 2391 Score = 29.6 bits (65), Expect = 0.53 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 8 THSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSY---GGQRSMDSYLNQSYGMDN 61 +H ++ + +G + + GSYG + DYGH Y GG R S + S+ D+ Sbjct: 2326 SHFQSHSSERQRHGSSQVWKHGSYGPAEYDYGHTGYGPSGGSRKSISNSHLSWSTDS 2382 >gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform B1 [Homo sapiens] Length = 353 Score = 29.6 bits (65), Expect = 0.53 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 27 GPGSYGGMDRDYGH--GSYGGQRSMDSYLNQSYGMDNHSGGG 66 G G YGG YG+ G YGG D+Y +YG N++ G Sbjct: 265 GRGGYGGGGPGYGNQGGGYGG--GYDNYGGGNYGSGNYNDFG 304 >gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2 [Homo sapiens] Length = 341 Score = 29.6 bits (65), Expect = 0.53 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 27 GPGSYGGMDRDYGH--GSYGGQRSMDSYLNQSYGMDNHSGGG 66 G G YGG YG+ G YGG D+Y +YG N++ G Sbjct: 253 GRGGYGGGGPGYGNQGGGYGG--GYDNYGGGNYGSGNYNDFG 292 >gi|153945796 keratin associated protein 6-3 [Homo sapiens] Length = 110 Score = 29.6 bits (65), Expect = 0.53 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 8 THSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYG 44 T++ C + Y+ +NG YG YGG+ YG YG Sbjct: 5 TNTMCGSYYRNYNG-GHGYGCCGYGGLGCGYGGCGYG 40 Score = 29.3 bits (64), Expect = 0.70 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 18 GFNGMDRDYG--PGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR 70 G+ G+ YG YGG+ YG G R +D YG +HS G G R Sbjct: 43 GYGGLGFGYGGLDCGYGGLGCGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYR 97 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,564,126 Number of Sequences: 37866 Number of extensions: 159818 Number of successful extensions: 585 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 328 Number of HSP's gapped (non-prelim): 249 length of query: 70 length of database: 18,247,518 effective HSP length: 43 effective length of query: 27 effective length of database: 16,619,280 effective search space: 448720560 effective search space used: 448720560 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.