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Search of human proteins with 33620745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
(1555 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 3179 0.0
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 104 8e-22
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 104 8e-22
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 103 1e-21
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 102 3e-21
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 102 4e-21
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 101 5e-21
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 101 5e-21
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 101 6e-21
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 101 6e-21
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 101 6e-21
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 100 8e-21
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 100 8e-21
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 100 8e-21
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 100 1e-20
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 99 4e-20
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 99 4e-20
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 99 4e-20
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 99 4e-20
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 98 5e-20
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 97 9e-20
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 97 9e-20
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 97 1e-19
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 97 1e-19
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 97 2e-19
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 96 4e-19
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 95 5e-19
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 94 8e-19
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 94 1e-18
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 94 1e-18
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sapiens]
Length = 1555
Score = 3179 bits (8242), Expect = 0.0
Identities = 1555/1555 (100%), Positives = 1555/1555 (100%)
Query: 1 MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA 60
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
Sbjct: 1 MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA 60
Query: 61 QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS 120
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
Sbjct: 61 QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS 120
Query: 121 TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV 180
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
Sbjct: 121 TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV 180
Query: 181 SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV 240
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
Sbjct: 181 SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV 240
Query: 241 QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN 300
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
Sbjct: 241 QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN 300
Query: 301 RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQL 360
RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQL
Sbjct: 301 RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQL 360
Query: 361 DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK 420
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
Sbjct: 361 DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK 420
Query: 421 EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS 480
EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
Sbjct: 421 EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS 480
Query: 481 RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSRE 540
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSRE
Sbjct: 481 RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSRE 540
Query: 541 DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG 600
DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG
Sbjct: 541 DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG 600
Query: 601 WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS 660
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
Sbjct: 601 WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS 660
Query: 661 KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED 720
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
Sbjct: 661 KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED 720
Query: 721 SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRI 780
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRI
Sbjct: 721 SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRI 780
Query: 781 DGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
DGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
Sbjct: 781 DGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
Query: 841 AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG 900
AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG
Sbjct: 841 AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG 900
Query: 901 GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPH 960
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPH
Sbjct: 901 GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPH 960
Query: 961 GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI 1020
GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
Sbjct: 961 GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI 1020
Query: 1021 EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG 1080
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG
Sbjct: 1021 EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG 1080
Query: 1081 QQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPG 1140
QQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPG
Sbjct: 1081 QQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPG 1140
Query: 1141 NAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQF 1200
NAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQF
Sbjct: 1141 NAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQF 1200
Query: 1201 GNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYP 1260
GNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYP
Sbjct: 1201 GNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYP 1260
Query: 1261 DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN 1320
DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN
Sbjct: 1261 DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN 1320
Query: 1321 FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT 1380
FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
Sbjct: 1321 FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT 1380
Query: 1381 HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV 1440
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
Sbjct: 1381 HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV 1440
Query: 1441 ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE 1500
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
Sbjct: 1441 ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE 1500
Query: 1501 NPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTVESV 1555
NPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTVESV
Sbjct: 1501 NPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTVESV 1555
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 104 bits (259), Expect = 8e-22
Identities = 146/474 (30%), Positives = 176/474 (37%), Gaps = 90/474 (18%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLR---- 833
P + GPP P G PGQ G GP +G G +G P EGPPGP G P +
Sbjct: 999 PGLPGPPGPKGN--PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSP 1056
Query: 834 -FEGPIGQAGGGGFRFEGSPGL-------RFEGSPGGLRFEGPGGQP-VGGL-RFEGHRG 883
G G G G G PGL G PG +G G P + GL G +G
Sbjct: 1057 GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Query: 884 QPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGI 941
QP G F G G P G P G P GL E G G GP G+ G G
Sbjct: 1117 QP-GLPGFPGTPGPP-GPKGISGPPGNP--GLPGEPGPVGGGGHPGQPGPPGEKGKPGQD 1172
Query: 942 RFEGPLLQQG----VGMRFEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGV----G 992
GP Q+G G GP G ++G + +G + GN GP G+PG G
Sbjct: 1173 GIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPG 1232
Query: 993 IR-------FEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFD-GQPG 1044
++ GP ++ G GP P G + GP +G P G ++ + G PG
Sbjct: 1233 VQGPPGPPGSPGPALE--GPKGNPGPQGPPGRPGLPGP--EGPPGLPGNGGIKGEKGNPG 1288
Query: 1045 QPSLLPRFDGLHGQPG-PRFERTPGQPGPQRFDGPPGQQVQPRFDGV------------- 1090
QP LP GL G G P + PG+PG G PG P F G+
Sbjct: 1289 QPG-LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
Query: 1091 ----------PQRFDGPQHQ------QASRFDIP--LGLQGTRFDNHPSQRLESVSFNQT 1132
P GP Q A IP GL+G P Q L T
Sbjct: 1348 GEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP-QGLP----GPT 1402
Query: 1133 GPYNDPPGNAF--------NAPSQGLQFQRHEQIFDSPQGPN-FNGPHGPGNQS 1177
GP DP N GL Q + D P GP+ GP GP S
Sbjct: 1403 GPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTS 1456
Score = 98.6 bits (244), Expect = 4e-20
Identities = 132/383 (34%), Positives = 156/383 (40%), Gaps = 73/383 (19%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRIDGPP----TPASLRFDGSPGQMGGGGPLRFEGPQ 810
P P + GP GP K P I GPP TP + +G PG G F GP+
Sbjct: 701 PGIPGIGLPGPP-----GP-KGFPGIPGPPGAPGTPGRIGLEGPPGPPG------FPGPK 748
Query: 811 GQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG----LRFEGSPGGLRFE 866
G+ G P GPPGP G P F+G +G G GF G PG +G PG
Sbjct: 749 GEPGFALP----GPPGPPGLP-GFKGALGPKGDRGF--PGPPGPPGRTGLDGLPGPKGDV 801
Query: 867 GPGGQP----VGGLRFEGHRGQPVGGLRFEGPHGQP----VGGLRFD-NPRGQPVGGLRF 917
GP GQP GL G +G P G GP GQP + G + D P G V G
Sbjct: 802 GPNGQPGPMGPPGLPGIGVQGPP-GPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPG 860
Query: 918 EGGHGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHG-------QSVA 965
E G A GP G PG G F G + G+ M GP G V
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM-MGPPGPPGPLGIPGRSGVP 919
Query: 966 GLR----FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG-PSVPGGGL 1018
GL+ +GQ G G +G G PG + L+ G G P +PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPG--- 976
Query: 1019 RIEGPLG-QGGPRFEGCHALRFDGQPGQPSLL-PRFD-GLHGQPG----PRFERTPGQ-- 1069
+ GP G QG P G L GQPG P P+ + GL GQPG P + T G
Sbjct: 977 -VSGPKGYQGLPGDPGQPGL--SGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMG 1033
Query: 1070 -PGPQRFDGPPGQQVQPRFDGVP 1091
PGPQ +GPPG P G P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSP 1056
Score = 97.4 bits (241), Expect = 9e-20
Identities = 150/489 (30%), Positives = 180/489 (36%), Gaps = 103/489 (21%)
Query: 711 FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIF 770
FP +R + D P + P GLD P GP P+ P+ I
Sbjct: 401 FPGERGQKGDEGPPGISIPGP--PGLDGQP-------GAPGLPGPPGPAGPHIPPSDEIC 451
Query: 771 EGPNKLSPRIDGPP-TPASLRFDGSPGQMGGGGPLRFE-------GPQGQLG-GGCPLRF 821
E P GPP +P G G G G F GP GQ G G P
Sbjct: 452 E------PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLP--- 502
Query: 822 EGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGH 881
GPPG +G P + +G GQAG G + G PG+ G+PG F G G+P L F G
Sbjct: 503 -GPPGSLGFPGQ-KGEKGQAGATGPK--GLPGI--PGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 882 RGQPVGGLRFEGPHGQPV--------GGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
+G G L G G P G P+G+P GG+ F+G GP G G
Sbjct: 557 KGDK-GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEP-GGITFKGERGPPGNP----GL 610
Query: 934 HGQPGGGIRFEGPLLQQGVGMRFEGPHGQS-VAGLRFEGQHNQLGGNLRFEGPHGQPGVG 992
G PG GP+ G G GP G+ + G+ G Q G GP G PG
Sbjct: 611 PGLPGN----IGPMGPPGFGP--PGPVGEKGIQGVA--GNPGQPG----IPGPKGDPGQT 658
Query: 993 IRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRF 1052
I G P +PG R +G +G G G PGQP L P
Sbjct: 659 ITQPGK------------PGLPGNPGR-DGDVGLPGD----------PGLPGQPGL-PGI 694
Query: 1053 DGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQR--FDGPQHQQASRFDIPLG 1110
G G+PG PG PGP+ F G PG P G P R +GP F P G
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPG---PPGAPGTPGRIGLEGPPGPPG--FPGPKG 749
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYND-----PPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
G P GP D PPG GL + + GP
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGD------VGP 803
Query: 1166 NFN-GPHGP 1173
N GP GP
Sbjct: 804 NGQPGPMGP 812
Score = 94.0 bits (232), Expect = 1e-18
Identities = 123/379 (32%), Positives = 151/379 (39%), Gaps = 77/379 (20%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
I GPP L G PG +GGGG GP G+ G +G PGP G +G G
Sbjct: 1135 ISGPPGNPGL--PGEPGPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQ----KGEPG 1185
Query: 840 QAGGGGFRFEGSPGLRFE-------GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFE 892
Q G G G PGL + G PG GP G+P G F G +G P
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP-GFHGFPGVQGPP------- 1237
Query: 893 GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG----GGIRFE-GPL 947
GP G P G + P+G P G GP G GP G PG GGI+ E G
Sbjct: 1238 GPPGSP--GPALEGPKGNP-------GPQGPPGRP-GLPGPEGPPGLPGNGGIKGEKGNP 1287
Query: 948 LQQGV----GMRFE-GPHG-------QSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIR 994
Q G+ G++ + GP G + G++ + + G +GP G PG G
Sbjct: 1288 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
Query: 995 FEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG----------PRFEGCHALRFD-GQP 1043
E L+ G GPS G + I+G G G P +G L G P
Sbjct: 1348 GEPGLIGPPGPPGLPGPS--GQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPP 1405
Query: 1044 GQPSL--LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQ------VQPRFDGVPQRFD 1095
G P LP FDG G+ G PGQPG + DGPPG P V F
Sbjct: 1406 GDPGRNGLPGFDGAGGRKGD--PGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFL 1463
Query: 1096 GPQHQQASRFDIPLGLQGT 1114
+H Q + D P QGT
Sbjct: 1464 ITRHSQTT--DAPQCPQGT 1480
Score = 92.4 bits (228), Expect = 3e-18
Identities = 131/406 (32%), Positives = 158/406 (38%), Gaps = 64/406 (15%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P G P + G PG G G GP G G + EGPPGP G F GP
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPG---IPGPPGAPGTPGRIGLEGPPGPPG----FPGP 747
Query: 838 IGQAGGGGFRFEGSPGL-RFEGS--PGGLR-FEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
G+ G G PGL F+G+ P G R F GP G P G +G G P G + G
Sbjct: 748 KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP-GRTGLDGLPG-PKGDV---G 802
Query: 894 PHGQPVGGLRFDNPRGQP-VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
P+GQP P G P + G+ +G GP G GP GQPG G ++G
Sbjct: 803 PNGQP-------GPMGPPGLPGIGVQGPPGPPG----IPGPIGQPG----LHGIPGEKG- 846
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGP 1011
GP G V G E + G GP G PG+ G G M GP
Sbjct: 847 ---DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP 903
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
P G L I G G P +G L+ GQPG P G G+PG PG PG
Sbjct: 904 PGPPGPLGIPG--RSGVPGLKGDDGLQ--GQPGLPGPTGE-KGSKGEPG-----LPGPPG 953
Query: 1072 PQ--RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF 1129
P G G++ +P G+P GP+ Q GL G P +
Sbjct: 954 PMDPNLLGSKGEKGEPGLPGIP-GVSGPKGYQ--------GLPGD--PGQPGLSGQPGLP 1002
Query: 1130 NQTGPYNDP--PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
GP +P PG GL+ + F PQG GP GP
Sbjct: 1003 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG--VEGPPGP 1046
Score = 92.0 bits (227), Expect = 4e-18
Identities = 132/438 (30%), Positives = 167/438 (38%), Gaps = 91/438 (20%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGG-GCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEG 850
+G PG G GP GP+GQ G G P GPPGP G GP G G F G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKG----IRGPPGLPG-----FPG 102
Query: 851 SPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQP-VGGLR---- 903
+PGL G PG GP G P G +G RG P G +GP G P + G++
Sbjct: 103 TPGL--PGMPGHDGAPGPQGIP-GCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPG 159
Query: 904 ------FDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQPG--------GGIRFEGPL 947
P+G P G +G GP+G GP G PG G GP
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTG----IPGPIGPPGPPGLMGPPGPPGLPGP- 214
Query: 948 LQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPL--VQQGGG 1005
+ +G+ F+GP G+ G +GP G PG + P+ Q G
Sbjct: 215 -KGNMGLNFQGPKGEK--------------GEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 1006 MRFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG-PRF 1063
G P G I GP G GG + E G+PG+ P DG +GQPG P
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE----QGEPGKRG-KPGKDGENGQPGIPGL 314
Query: 1064 ERTPGQPGPQRFDGPPGQQVQPRFDG-----VPQRFDGPQHQQASRFDIPLGLQGTRFDN 1118
PG PG DG GQ+ G +P+ G + +P GL
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP-GL------- 366
Query: 1119 HPSQRLESVSFNQTGP--YNDPPGNAFNAP--SQGLQFQRHEQIFDSPQGPNFNGPHG-- 1172
P ++ E GP PPG A P G +R ++ + P G + GP G
Sbjct: 367 -PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD 425
Query: 1173 --PGNQSFSNPLNRASGH 1188
PG P A H
Sbjct: 426 GQPGAPGLPGPPGPAGPH 443
Score = 91.3 bits (225), Expect = 7e-18
Identities = 127/410 (30%), Positives = 158/410 (38%), Gaps = 94/410 (22%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
+P + G P P G G G GP +G GQ +G PGP G +G
Sbjct: 1141 NPGLPGEPGPV-----GGGGHPGQPGPPGEKGKPGQ---------DGIPGPAGQ----KG 1182
Query: 837 PIGQAGGGGFRFEGSPGLR-------FEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGL 889
GQ G G G PGL G PG GP G+P G F G +G P
Sbjct: 1183 EPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP-GFHGFPGVQGPP---- 1237
Query: 890 RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG----GGIRFEG 945
GP G P G + P+G P G GP G GP G PG GGI+ E
Sbjct: 1238 ---GPPGSP--GPALEGPKGNP-------GPQGPPGRP-GLPGPEGPPGLPGNGGIKGE- 1283
Query: 946 PLLQQGVGMRFEGPHGQ-SVAGL-RFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQ 1002
+G GQ + GL +G G +G G+PG+ G++ + L
Sbjct: 1284 -----------KGNPGQPGLPGLPGLKGDQGPPG----LQGNPGRPGLNGMKGDPGLPGV 1328
Query: 1003 GGGMRFEGPS-VPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLH 1056
G +GPS VPG G + GP G G ++ G G P +P GL
Sbjct: 1329 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG-IPGQPGLK 1387
Query: 1057 GQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR- 1115
G PGP + G PGP G PG+ P FDG R P +P G GTR
Sbjct: 1388 GLPGP--QGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDP--------GLP-GQPGTRG 1436
Query: 1116 FDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
D P GP PPG ++ + G RH Q D+PQ P
Sbjct: 1437 LDGPPGPD------GLQGP-PGPPGT--SSVAHGFLITRHSQTTDAPQCP 1477
Score = 87.8 bits (216), Expect = 7e-17
Identities = 134/414 (32%), Positives = 155/414 (37%), Gaps = 103/414 (24%)
Query: 750 PLFDGPS-RPSVARDGPTKMIFEGP-------NKLSPRID----GPP-TPASLRFDGSPG 796
P F GP P A GP GP L P+ D GPP P DG PG
Sbjct: 742 PGFPGPKGEPGFALPGPP-----GPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPG 796
Query: 797 QMGGGGPLRFEGPQGQLGGGCP-LRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE----GS 851
G GP GP G G P + +GPPGP G P GPIGQ G G E G
Sbjct: 797 PKGDVGPNGQPGPMGP--PGLPGIGVQGPPGPPGIP----GPIGQPGLHGIPGEKGDPGP 850
Query: 852 PGLRFEGSPGGLRFEGPGGQP--------------VGGLRFEGHRGQ--------PVGGL 889
PGL G PG G G P G F G +G+ P G L
Sbjct: 851 PGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Query: 890 RFEGPHGQPVGGLRFDNP-RGQP--------VGGLRFEGGHGPSGAA----IRFDGPHGQ 936
G G P GL+ D+ +GQP G G GP G + G G+
Sbjct: 911 GIPGRSGVP--GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGE 968
Query: 937 PG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIR 994
PG G GP QG+ G GQ GL GQ G GP G PG+ +
Sbjct: 969 PGLPGIPGVSGPKGYQGL----PGDPGQP--GL--SGQPGLPGP----PGPKGNPGLPGQ 1016
Query: 995 --FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGG----PRFEGCHALRFD-GQPGQ 1045
GP +G G M F GP +EGP G G P G + D G PG
Sbjct: 1017 PGLIGPPGLKGTIGDMGFPGPQ------GVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGI 1070
Query: 1046 PSL-LPRFDGLHGQPG-------PRFERTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
S+ LP G G+PG P + + G PG G PG + QP G P
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFP 1124
Score = 81.3 bits (199), Expect = 7e-15
Identities = 147/513 (28%), Positives = 182/513 (35%), Gaps = 112/513 (21%)
Query: 750 PLFDGPSRPSVAR-----DG----PTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGG 800
P F GP P R DG P GP L P P DG+PG G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGI 121
Query: 801 GGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP-----------LRFEGPIGQAGGGGFRFE 849
G +G +G G +GPPGP G P GP G G +
Sbjct: 122 PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-----YP 176
Query: 850 GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-------VGGLRFEGPHGQPVGGL 902
G PG+ +G PG GP G P G G G P GL F+GP G+ G
Sbjct: 177 GPPGI--QGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-GEQ 232
Query: 903 RFDNPRGQP---------------VGGLRFEGGHGPSG-AAIRFDGPHGQPGGGIRFEGP 946
P G P G G GP G IR GP G PGG +G
Sbjct: 233 GLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIR--GPPGPPGGEKGEKGE 290
Query: 947 LLQQGVGMR--FEGPHGQ-SVAGL----RFEGQHNQLG--GNLRFEGPHGQPGVGIRFEG 997
+ G + +G +GQ + GL + G+ + G G GP G PG+ I G
Sbjct: 291 QGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Query: 998 PLVQQGGGMRFEGPSVPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPS----- 1047
+ G P +PG G I+GP G GP G + G PG P
Sbjct: 351 TGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP--PGAAVMGPPGPPGFPGERGQK 408
Query: 1048 --------LLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQH 1099
+P GL GQPG PG PGP GP G + P D + + GP
Sbjct: 409 GDEGPPGISIPGPPGLDGQPG-----APGLPGP---PGPAGPHIPPS-DEICE--PGPPG 457
Query: 1100 QQASRFDIPL-GLQGTRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQGLQFQRHE 1156
S D L G QG + D + + +GP P PG S G Q+ E
Sbjct: 458 PPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGE 516
Query: 1157 Q-------------IFDSPQGPNFNGPHG-PGN 1175
+ I +P P F G G PG+
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGD 549
Score = 33.9 bits (76), Expect = 1.3
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 23/125 (18%)
Query: 1054 GLHGQPG----PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPL 1109
G+ G+ G P E PG PG +GPPG + Q DG+P GP + R P
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKGIRG--PP 95
Query: 1110 GLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIF-DSPQGPNFN 1168
GL G F P GP P G + E+ F SP P
Sbjct: 96 GLPG--FPGTPGLPGMPGHDGAPGPQGIP----------GCNGTKGERGFPGSPGFPGLQ 143
Query: 1169 GPHGP 1173
GP GP
Sbjct: 144 GPPGP 148
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 771 EGPNKLSPRIDGPPTPASLR----FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPG 826
+GP L P GPP FDG+ G+ G G G +G G P +GPPG
Sbjct: 1393 QGPQGL-PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPG 1451
Query: 827 PVGT 830
P GT
Sbjct: 1452 PPGT 1455
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 104 bits (259), Expect = 8e-22
Identities = 149/477 (31%), Positives = 176/477 (36%), Gaps = 93/477 (19%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLR---- 833
P + GPP P G PGQ G GP +G G +G P EGPPGP G P +
Sbjct: 999 PGLPGPPGPKGN--PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSP 1056
Query: 834 -FEGPIGQAGGGGFRFEGSPGL-------RFEGSPGGLRFEGPGGQP-VGGL-RFEGHRG 883
G G G G G PGL G PG +G G P + GL G +G
Sbjct: 1057 GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Query: 884 QPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGI 941
QP G F G G P G P G P GL E G G GP G+ G G
Sbjct: 1117 QP-GLPGFPGTPGPP-GPKGISGPPGNP--GLPGEPGPVGGGGHPGQPGPPGEKGKPGQD 1172
Query: 942 RFEGPLLQQG----VGMRFEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGV----- 991
GP Q+G G GP G ++G + +G + GN GP G+PG
Sbjct: 1173 GIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPG 1232
Query: 992 -----------GIRFEGPLVQQG-----GGMRFEG-------PSVPGGGLRIEGPLGQ-G 1027
G EGP G G F+G P +PG G I+G G G
Sbjct: 1233 VQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNG-GIKGEKGNPG 1291
Query: 1028 GPRFEGCHALRFD-------GQPGQPSLLPRFDGLHGQPG-PRFERTPGQPGPQRFDGPP 1079
P G L+ D G PG+P L +G+ G PG P PG GP G
Sbjct: 1292 QPGLPGLPGLKGDQGPPGLQGNPGRPGL----NGMKGDPGLPGVPGFPGMKGPSGVPGSA 1347
Query: 1080 GQQVQPRFDGV--PQRFDGPQHQ------QASRFDIP--LGLQGTRFDNHPSQRLESVSF 1129
G + +P G P GP Q A IP GL+G P Q L
Sbjct: 1348 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP-QGLP---- 1402
Query: 1130 NQTGPYNDPPGNAF--------NAPSQGLQFQRHEQIFDSPQGPN-FNGPHGPGNQS 1177
TGP DP N GL Q + D P GP+ GP GP S
Sbjct: 1403 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTS 1459
Score = 97.4 bits (241), Expect = 9e-20
Identities = 150/489 (30%), Positives = 180/489 (36%), Gaps = 103/489 (21%)
Query: 711 FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIF 770
FP +R + D P + P GLD P GP P+ P+ I
Sbjct: 401 FPGERGQKGDEGPPGISIPGP--PGLDGQP-------GAPGLPGPPGPAGPHIPPSDEIC 451
Query: 771 EGPNKLSPRIDGPP-TPASLRFDGSPGQMGGGGPLRFE-------GPQGQLG-GGCPLRF 821
E P GPP +P G G G G F GP GQ G G P
Sbjct: 452 E------PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLP--- 502
Query: 822 EGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGH 881
GPPG +G P + +G GQAG G + G PG+ G+PG F G G+P L F G
Sbjct: 503 -GPPGSLGFPGQ-KGEKGQAGATGPK--GLPGI--PGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 882 RGQPVGGLRFEGPHGQPV--------GGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
+G G L G G P G P+G+P GG+ F+G GP G G
Sbjct: 557 KGDK-GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEP-GGITFKGERGPPGNP----GL 610
Query: 934 HGQPGGGIRFEGPLLQQGVGMRFEGPHGQS-VAGLRFEGQHNQLGGNLRFEGPHGQPGVG 992
G PG GP+ G G GP G+ + G+ G Q G GP G PG
Sbjct: 611 PGLPGN----IGPMGPPGFGP--PGPVGEKGIQGVA--GNPGQPG----IPGPKGDPGQT 658
Query: 993 IRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRF 1052
I G P +PG R +G +G G G PGQP L P
Sbjct: 659 ITQPGK------------PGLPGNPGR-DGDVGLPGD----------PGLPGQPGL-PGI 694
Query: 1053 DGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQR--FDGPQHQQASRFDIPLG 1110
G G+PG PG PGP+ F G PG P G P R +GP F P G
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPG---PPGAPGTPGRIGLEGPPGPPG--FPGPKG 749
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYND-----PPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
G P GP D PPG GL + + GP
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGD------VGP 803
Query: 1166 NFN-GPHGP 1173
N GP GP
Sbjct: 804 NGQPGPMGP 812
Score = 94.4 bits (233), Expect = 8e-19
Identities = 125/380 (32%), Positives = 154/380 (40%), Gaps = 76/380 (20%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
I GPP L G PG +GGGG GP G+ G +G PGP G +G G
Sbjct: 1135 ISGPPGNPGL--PGEPGPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQ----KGEPG 1185
Query: 840 QAGGGGFRFEGSPGLRFE-------GSPGGLRFEGPGGQPVGGLRFEGHRGQP----VGG 888
Q G G G PGL + G PG GP G+P G F G +G P G
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP-GFHGFPGVQGPPGPPGSPG 1244
Query: 889 LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFE-GP 946
EGP G P P+G P G F+G GP +GP G PG GGI+ E G
Sbjct: 1245 PALEGPKGNP-------GPQGPP-GRPGFQGLPGP-------EGPPGLPGNGGIKGEKGN 1289
Query: 947 LLQQGV----GMRFE-GPHG-------QSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGI 993
Q G+ G++ + GP G + G++ + + G +GP G PG G
Sbjct: 1290 PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP 1349
Query: 994 RFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG----------PRFEGCHALRFD-GQ 1042
E L+ G GPS G + I+G G G P +G L G
Sbjct: 1350 EGEPGLIGPPGPPGLPGPS--GQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1407
Query: 1043 PGQPSL--LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQ------VQPRFDGVPQRF 1094
PG P LP FDG G+ G PGQPG + DGPPG P V F
Sbjct: 1408 PGDPGRNGLPGFDGAGGRKGD--PGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGF 1465
Query: 1095 DGPQHQQASRFDIPLGLQGT 1114
+H Q + D P QGT
Sbjct: 1466 LITRHSQTT--DAPQCPQGT 1483
Score = 92.8 bits (229), Expect = 2e-18
Identities = 130/406 (32%), Positives = 161/406 (39%), Gaps = 83/406 (20%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG----TPL 832
+P + G P P G G G GP +G GQ G P +G PG G P
Sbjct: 1141 NPGLPGEPGPV-----GGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP 1195
Query: 833 RFEGPIGQAGGGGF-RFEGSPGLRF-EGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR 890
G GQ G GG G+PGL +G PG F G G P G G P G
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP-------GPPGSP--GPA 1246
Query: 891 FEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPLLQ 949
EGP G P P+G P G F+G GP +GP G PG GGI+ E
Sbjct: 1247 LEGPKGNP-------GPQGPP-GRPGFQGLPGP-------EGPPGLPGNGGIKGE----- 1286
Query: 950 QGVGMRFEGPHGQ-SVAGL-RFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGM 1006
+G GQ + GL +G G +G G+PG+ G++ + L G
Sbjct: 1287 -------KGNPGQPGLPGLPGLKGDQGPPG----LQGNPGRPGLNGMKGDPGLPGVPGFP 1335
Query: 1007 RFEGPS-VPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG 1060
+GPS VPG G + GP G G ++ G G P +P GL G PG
Sbjct: 1336 GMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG-IPGQPGLKGLPG 1394
Query: 1061 PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNH 1119
P + G PGP G PG+ P FDG R P +P G GTR D
Sbjct: 1395 P--QGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDP--------GLP-GQPGTRGLDGP 1443
Query: 1120 PSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
P GP PPG ++ + G RH Q D+PQ P
Sbjct: 1444 PGPD------GLQGP-PGPPGT--SSVAHGFLITRHSQTTDAPQCP 1480
Score = 92.4 bits (228), Expect = 3e-18
Identities = 131/406 (32%), Positives = 158/406 (38%), Gaps = 64/406 (15%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P G P + G PG G G GP G G + EGPPGP G F GP
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPG---IPGPPGAPGTPGRIGLEGPPGPPG----FPGP 747
Query: 838 IGQAGGGGFRFEGSPGL-RFEGS--PGGLR-FEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
G+ G G PGL F+G+ P G R F GP G P G +G G P G + G
Sbjct: 748 KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP-GRTGLDGLPG-PKGDV---G 802
Query: 894 PHGQPVGGLRFDNPRGQP-VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
P+GQP P G P + G+ +G GP G GP GQPG G ++G
Sbjct: 803 PNGQP-------GPMGPPGLPGIGVQGPPGPPG----IPGPIGQPG----LHGIPGEKG- 846
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGP 1011
GP G V G E + G GP G PG+ G G M GP
Sbjct: 847 ---DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP 903
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
P G L I G G P +G L+ GQPG P G G+PG PG PG
Sbjct: 904 PGPPGPLGIPG--RSGVPGLKGDDGLQ--GQPGLPGPTGE-KGSKGEPG-----LPGPPG 953
Query: 1072 PQ--RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF 1129
P G G++ +P G+P GP+ Q GL G P +
Sbjct: 954 PMDPNLLGSKGEKGEPGLPGIP-GVSGPKGYQ--------GLPGD--PGQPGLSGQPGLP 1002
Query: 1130 NQTGPYNDP--PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
GP +P PG GL+ + F PQG GP GP
Sbjct: 1003 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG--VEGPPGP 1046
Score = 92.0 bits (227), Expect = 4e-18
Identities = 132/438 (30%), Positives = 167/438 (38%), Gaps = 91/438 (20%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGG-GCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEG 850
+G PG G GP GP+GQ G G P GPPGP G GP G G F G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKG----IRGPPGLPG-----FPG 102
Query: 851 SPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQP-VGGLR---- 903
+PGL G PG GP G P G +G RG P G +GP G P + G++
Sbjct: 103 TPGL--PGMPGHDGAPGPQGIP-GCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPG 159
Query: 904 ------FDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQPG--------GGIRFEGPL 947
P+G P G +G GP+G GP G PG G GP
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTG----IPGPIGPPGPPGLMGPPGPPGLPGP- 214
Query: 948 LQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPL--VQQGGG 1005
+ +G+ F+GP G+ G +GP G PG + P+ Q G
Sbjct: 215 -KGNMGLNFQGPKGEK--------------GEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 1006 MRFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG-PRF 1063
G P G I GP G GG + E G+PG+ P DG +GQPG P
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE----QGEPGKRG-KPGKDGENGQPGIPGL 314
Query: 1064 ERTPGQPGPQRFDGPPGQQVQPRFDG-----VPQRFDGPQHQQASRFDIPLGLQGTRFDN 1118
PG PG DG GQ+ G +P+ G + +P GL
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP-GL------- 366
Query: 1119 HPSQRLESVSFNQTGP--YNDPPGNAFNAP--SQGLQFQRHEQIFDSPQGPNFNGPHG-- 1172
P ++ E GP PPG A P G +R ++ + P G + GP G
Sbjct: 367 -PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD 425
Query: 1173 --PGNQSFSNPLNRASGH 1188
PG P A H
Sbjct: 426 GQPGAPGLPGPPGPAGPH 443
Score = 81.3 bits (199), Expect = 7e-15
Identities = 147/513 (28%), Positives = 182/513 (35%), Gaps = 112/513 (21%)
Query: 750 PLFDGPSRPSVAR-----DG----PTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGG 800
P F GP P R DG P GP L P P DG+PG G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGI 121
Query: 801 GGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP-----------LRFEGPIGQAGGGGFRFE 849
G +G +G G +GPPGP G P GP G G +
Sbjct: 122 PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-----YP 176
Query: 850 GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-------VGGLRFEGPHGQPVGGL 902
G PG+ +G PG GP G P G G G P GL F+GP G+ G
Sbjct: 177 GPPGI--QGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-GEQ 232
Query: 903 RFDNPRGQP---------------VGGLRFEGGHGPSG-AAIRFDGPHGQPGGGIRFEGP 946
P G P G G GP G IR GP G PGG +G
Sbjct: 233 GLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIR--GPPGPPGGEKGEKGE 290
Query: 947 LLQQGVGMR--FEGPHGQ-SVAGL----RFEGQHNQLG--GNLRFEGPHGQPGVGIRFEG 997
+ G + +G +GQ + GL + G+ + G G GP G PG+ I G
Sbjct: 291 QGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Query: 998 PLVQQGGGMRFEGPSVPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPS----- 1047
+ G P +PG G I+GP G GP G + G PG P
Sbjct: 351 TGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP--PGAAVMGPPGPPGFPGERGQK 408
Query: 1048 --------LLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQH 1099
+P GL GQPG PG PGP GP G + P D + + GP
Sbjct: 409 GDEGPPGISIPGPPGLDGQPG-----APGLPGP---PGPAGPHIPPS-DEICE--PGPPG 457
Query: 1100 QQASRFDIPL-GLQGTRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQGLQFQRHE 1156
S D L G QG + D + + +GP P PG S G Q+ E
Sbjct: 458 PPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGE 516
Query: 1157 Q-------------IFDSPQGPNFNGPHG-PGN 1175
+ I +P P F G G PG+
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGD 549
Score = 33.9 bits (76), Expect = 1.3
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 23/125 (18%)
Query: 1054 GLHGQPG----PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPL 1109
G+ G+ G P E PG PG +GPPG + Q DG+P GP + R P
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKGIRG--PP 95
Query: 1110 GLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIF-DSPQGPNFN 1168
GL G F P GP P G + E+ F SP P
Sbjct: 96 GLPG--FPGTPGLPGMPGHDGAPGPQGIP----------GCNGTKGERGFPGSPGFPGLQ 143
Query: 1169 GPHGP 1173
GP GP
Sbjct: 144 GPPGP 148
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 771 EGPNKLSPRIDGPPTPASLR----FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPG 826
+GP L P GPP FDG+ G+ G G G +G G P +GPPG
Sbjct: 1396 QGPQGL-PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPG 1454
Query: 827 PVGT 830
P GT
Sbjct: 1455 PPGT 1458
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 103 bits (257), Expect = 1e-21
Identities = 152/478 (31%), Positives = 176/478 (36%), Gaps = 92/478 (19%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLR---- 833
P + GPP P G PGQ G GP +G G +G P EGPPGP G P +
Sbjct: 999 PGLPGPPGPKGN--PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSP 1056
Query: 834 -FEGPIGQAGGGGFRFEGSPGL-------RFEGSPGGLRFEGPGGQP-VGGL-RFEGHRG 883
G G G G G PGL G PG +G G P + GL G +G
Sbjct: 1057 GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Query: 884 QPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGI 941
QP G F G G P G P G P GL E G G GP G+ G G
Sbjct: 1117 QP-GLPGFPGTPGPP-GPKGISGPPGNP--GLPGEPGPVGGGGHPGQPGPPGEKGKPGQD 1172
Query: 942 RFEGPLLQQG----VGMRFEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGV----G 992
GP Q+G G GP G ++G + +G + GN GP G+PG G
Sbjct: 1173 GIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPG 1232
Query: 993 IRFEGPLVQQGG-GMRFEGPS---VPGGGLRIEGPLG-QGGPRFEGCHALRFD------- 1040
+ +GP G G EGP P G GP G QG P EG L +
Sbjct: 1233 V--QGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEK 1290
Query: 1041 GQPGQPSLLPRFDGLHGQPG-PRFERTPGQPGPQRFDGPPGQQVQPRFDGV--------- 1090
G PGQP LP GL G G P + PG+PG G PG P F G+
Sbjct: 1291 GNPGQPG-LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGS 1349
Query: 1091 --------------PQRFDGPQHQ------QASRFDIP--LGLQGTRFDNHPSQRLESVS 1128
P GP Q A IP GL+G P Q L
Sbjct: 1350 AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP-QGLP--- 1405
Query: 1129 FNQTGPYNDPPGNAF--------NAPSQGLQFQRHEQIFDSPQGPN-FNGPHGPGNQS 1177
TGP DP N GL Q + D P GP+ GP GP S
Sbjct: 1406 -GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTS 1462
Score = 98.6 bits (244), Expect = 4e-20
Identities = 132/383 (34%), Positives = 156/383 (40%), Gaps = 73/383 (19%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRIDGPP----TPASLRFDGSPGQMGGGGPLRFEGPQ 810
P P + GP GP K P I GPP TP + +G PG G F GP+
Sbjct: 701 PGIPGIGLPGPP-----GP-KGFPGIPGPPGAPGTPGRIGLEGPPGPPG------FPGPK 748
Query: 811 GQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG----LRFEGSPGGLRFE 866
G+ G P GPPGP G P F+G +G G GF G PG +G PG
Sbjct: 749 GEPGFALP----GPPGPPGLP-GFKGALGPKGDRGF--PGPPGPPGRTGLDGLPGPKGDV 801
Query: 867 GPGGQP----VGGLRFEGHRGQPVGGLRFEGPHGQP----VGGLRFD-NPRGQPVGGLRF 917
GP GQP GL G +G P G GP GQP + G + D P G V G
Sbjct: 802 GPNGQPGPMGPPGLPGIGVQGPP-GPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPG 860
Query: 918 EGGHGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHG-------QSVA 965
E G A GP G PG G F G + G+ M GP G V
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM-MGPPGPPGPLGIPGRSGVP 919
Query: 966 GLR----FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG-PSVPGGGL 1018
GL+ +GQ G G +G G PG + L+ G G P +PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPG--- 976
Query: 1019 RIEGPLG-QGGPRFEGCHALRFDGQPGQPSLL-PRFD-GLHGQPG----PRFERTPGQ-- 1069
+ GP G QG P G L GQPG P P+ + GL GQPG P + T G
Sbjct: 977 -VSGPKGYQGLPGDPGQPGL--SGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMG 1033
Query: 1070 -PGPQRFDGPPGQQVQPRFDGVP 1091
PGPQ +GPPG P G P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSP 1056
Score = 97.4 bits (241), Expect = 9e-20
Identities = 150/489 (30%), Positives = 180/489 (36%), Gaps = 103/489 (21%)
Query: 711 FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIF 770
FP +R + D P + P GLD P GP P+ P+ I
Sbjct: 401 FPGERGQKGDEGPPGISIPGP--PGLDGQP-------GAPGLPGPPGPAGPHIPPSDEIC 451
Query: 771 EGPNKLSPRIDGPP-TPASLRFDGSPGQMGGGGPLRFE-------GPQGQLG-GGCPLRF 821
E P GPP +P G G G G F GP GQ G G P
Sbjct: 452 E------PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLP--- 502
Query: 822 EGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGH 881
GPPG +G P + +G GQAG G + G PG+ G+PG F G G+P L F G
Sbjct: 503 -GPPGSLGFPGQ-KGEKGQAGATGPK--GLPGI--PGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 882 RGQPVGGLRFEGPHGQPV--------GGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
+G G L G G P G P+G+P GG+ F+G GP G G
Sbjct: 557 KGDK-GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEP-GGITFKGERGPPGNP----GL 610
Query: 934 HGQPGGGIRFEGPLLQQGVGMRFEGPHGQS-VAGLRFEGQHNQLGGNLRFEGPHGQPGVG 992
G PG GP+ G G GP G+ + G+ G Q G GP G PG
Sbjct: 611 PGLPGN----IGPMGPPGFGP--PGPVGEKGIQGVA--GNPGQPG----IPGPKGDPGQT 658
Query: 993 IRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRF 1052
I G P +PG R +G +G G G PGQP L P
Sbjct: 659 ITQPGK------------PGLPGNPGR-DGDVGLPGD----------PGLPGQPGL-PGI 694
Query: 1053 DGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQR--FDGPQHQQASRFDIPLG 1110
G G+PG PG PGP+ F G PG P G P R +GP F P G
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPG---PPGAPGTPGRIGLEGPPGPPG--FPGPKG 749
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYND-----PPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
G P GP D PPG GL + + GP
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGD------VGP 803
Query: 1166 NFN-GPHGP 1173
N GP GP
Sbjct: 804 NGQPGPMGP 812
Score = 94.0 bits (232), Expect = 1e-18
Identities = 124/379 (32%), Positives = 153/379 (40%), Gaps = 71/379 (18%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
I GPP L G PG +GGGG GP G+ G +G PGP G +G G
Sbjct: 1135 ISGPPGNPGL--PGEPGPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQ----KGEPG 1185
Query: 840 QAGGGGFRFEGSPGLRFE-------GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFE 892
Q G G G PGL + G PG GP G+P G F G +G P
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP-GFHGFPGVQGPP------- 1237
Query: 893 GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG----GGIRFE-GPL 947
GP G P G + P+G P G G GP+G GP G PG GGI+ E G
Sbjct: 1238 GPPGSP--GPALEGPKGNP-GPQGPPGRPGPTGFQ-GLPGPEGPPGLPGNGGIKGEKGNP 1293
Query: 948 LQQGV----GMRFE-GPHG-------QSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIR 994
Q G+ G++ + GP G + G++ + + G +GP G PG G
Sbjct: 1294 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Query: 995 FEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG----------PRFEGCHALRFD-GQP 1043
E L+ G GPS G + I+G G G P +G L G P
Sbjct: 1354 GEPGLIGPPGPPGLPGPS--GQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPP 1411
Query: 1044 GQPSL--LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQ------VQPRFDGVPQRFD 1095
G P LP FDG G+ G PGQPG + DGPPG P V F
Sbjct: 1412 GDPGRNGLPGFDGAGGRKGD--PGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFL 1469
Query: 1096 GPQHQQASRFDIPLGLQGT 1114
+H Q + D P QGT
Sbjct: 1470 ITRHSQTT--DAPQCPQGT 1486
Score = 92.4 bits (228), Expect = 3e-18
Identities = 131/406 (32%), Positives = 158/406 (38%), Gaps = 64/406 (15%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P G P + G PG G G GP G G + EGPPGP G F GP
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPG---IPGPPGAPGTPGRIGLEGPPGPPG----FPGP 747
Query: 838 IGQAGGGGFRFEGSPGL-RFEGS--PGGLR-FEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
G+ G G PGL F+G+ P G R F GP G P G +G G P G + G
Sbjct: 748 KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP-GRTGLDGLPG-PKGDV---G 802
Query: 894 PHGQPVGGLRFDNPRGQP-VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
P+GQP P G P + G+ +G GP G GP GQPG G ++G
Sbjct: 803 PNGQP-------GPMGPPGLPGIGVQGPPGPPG----IPGPIGQPG----LHGIPGEKG- 846
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGP 1011
GP G V G E + G GP G PG+ G G M GP
Sbjct: 847 ---DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP 903
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
P G L I G G P +G L+ GQPG P G G+PG PG PG
Sbjct: 904 PGPPGPLGIPG--RSGVPGLKGDDGLQ--GQPGLPGPTGE-KGSKGEPG-----LPGPPG 953
Query: 1072 PQ--RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF 1129
P G G++ +P G+P GP+ Q GL G P +
Sbjct: 954 PMDPNLLGSKGEKGEPGLPGIP-GVSGPKGYQ--------GLPGD--PGQPGLSGQPGLP 1002
Query: 1130 NQTGPYNDP--PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
GP +P PG GL+ + F PQG GP GP
Sbjct: 1003 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG--VEGPPGP 1046
Score = 92.4 bits (228), Expect = 3e-18
Identities = 130/408 (31%), Positives = 161/408 (39%), Gaps = 84/408 (20%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG----TPL 832
+P + G P P G G G GP +G GQ G P +G PG G P
Sbjct: 1141 NPGLPGEPGPV-----GGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP 1195
Query: 833 RFEGPIGQAGGGGF-RFEGSPGLRF-EGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR 890
G GQ G GG G+PGL +G PG F G G P G G P G
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP-------GPPGSP--GPA 1246
Query: 891 FEGPHGQPVGGLRFDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPL 947
EGP G P P+G P G F+G GP +GP G PG GGI+ E
Sbjct: 1247 LEGPKGNP-------GPQGPPGRPGPTGFQGLPGP-------EGPPGLPGNGGIKGE--- 1289
Query: 948 LQQGVGMRFEGPHGQ-SVAGL-RFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGG 1004
+G GQ + GL +G G +G G+PG+ G++ + L G
Sbjct: 1290 ---------KGNPGQPGLPGLPGLKGDQGPPG----LQGNPGRPGLNGMKGDPGLPGVPG 1336
Query: 1005 GMRFEGPS-VPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQ 1058
+GPS VPG G + GP G G ++ G G P +P GL G
Sbjct: 1337 FPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG-IPGQPGLKGL 1395
Query: 1059 PGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FD 1117
PGP + G PGP G PG+ P FDG R P +P G GTR D
Sbjct: 1396 PGP--QGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDP--------GLP-GQPGTRGLD 1444
Query: 1118 NHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
P GP PPG ++ + G RH Q D+PQ P
Sbjct: 1445 GPPGPD------GLQGP-PGPPGT--SSVAHGFLITRHSQTTDAPQCP 1483
Score = 92.0 bits (227), Expect = 4e-18
Identities = 132/438 (30%), Positives = 167/438 (38%), Gaps = 91/438 (20%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGG-GCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEG 850
+G PG G GP GP+GQ G G P GPPGP G GP G G F G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKG----IRGPPGLPG-----FPG 102
Query: 851 SPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQP-VGGLR---- 903
+PGL G PG GP G P G +G RG P G +GP G P + G++
Sbjct: 103 TPGL--PGMPGHDGAPGPQGIP-GCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPG 159
Query: 904 ------FDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQPG--------GGIRFEGPL 947
P+G P G +G GP+G GP G PG G GP
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTG----IPGPIGPPGPPGLMGPPGPPGLPGP- 214
Query: 948 LQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPL--VQQGGG 1005
+ +G+ F+GP G+ G +GP G PG + P+ Q G
Sbjct: 215 -KGNMGLNFQGPKGEK--------------GEQGLQGPPGPPGQISEQKRPIDVEFQKGD 259
Query: 1006 MRFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG-PRF 1063
G P G I GP G GG + E G+PG+ P DG +GQPG P
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE----QGEPGKRG-KPGKDGENGQPGIPGL 314
Query: 1064 ERTPGQPGPQRFDGPPGQQVQPRFDG-----VPQRFDGPQHQQASRFDIPLGLQGTRFDN 1118
PG PG DG GQ+ G +P+ G + +P GL
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP-GL------- 366
Query: 1119 HPSQRLESVSFNQTGP--YNDPPGNAFNAP--SQGLQFQRHEQIFDSPQGPNFNGPHG-- 1172
P ++ E GP PPG A P G +R ++ + P G + GP G
Sbjct: 367 -PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD 425
Query: 1173 --PGNQSFSNPLNRASGH 1188
PG P A H
Sbjct: 426 GQPGAPGLPGPPGPAGPH 443
Score = 87.8 bits (216), Expect = 7e-17
Identities = 134/414 (32%), Positives = 155/414 (37%), Gaps = 103/414 (24%)
Query: 750 PLFDGPS-RPSVARDGPTKMIFEGP-------NKLSPRID----GPP-TPASLRFDGSPG 796
P F GP P A GP GP L P+ D GPP P DG PG
Sbjct: 742 PGFPGPKGEPGFALPGPP-----GPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPG 796
Query: 797 QMGGGGPLRFEGPQGQLGGGCP-LRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE----GS 851
G GP GP G G P + +GPPGP G P GPIGQ G G E G
Sbjct: 797 PKGDVGPNGQPGPMGP--PGLPGIGVQGPPGPPGIP----GPIGQPGLHGIPGEKGDPGP 850
Query: 852 PGLRFEGSPGGLRFEGPGGQP--------------VGGLRFEGHRGQ--------PVGGL 889
PGL G PG G G P G F G +G+ P G L
Sbjct: 851 PGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Query: 890 RFEGPHGQPVGGLRFDNP-RGQP--------VGGLRFEGGHGPSGAA----IRFDGPHGQ 936
G G P GL+ D+ +GQP G G GP G + G G+
Sbjct: 911 GIPGRSGVP--GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGE 968
Query: 937 PG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIR 994
PG G GP QG+ G GQ GL GQ G GP G PG+ +
Sbjct: 969 PGLPGIPGVSGPKGYQGL----PGDPGQP--GL--SGQPGLPGP----PGPKGNPGLPGQ 1016
Query: 995 --FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGG----PRFEGCHALRFD-GQPGQ 1045
GP +G G M F GP +EGP G G P G + D G PG
Sbjct: 1017 PGLIGPPGLKGTIGDMGFPGPQ------GVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGI 1070
Query: 1046 PSL-LPRFDGLHGQPG-------PRFERTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
S+ LP G G+PG P + + G PG G PG + QP G P
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFP 1124
Score = 81.3 bits (199), Expect = 7e-15
Identities = 147/513 (28%), Positives = 182/513 (35%), Gaps = 112/513 (21%)
Query: 750 PLFDGPSRPSVAR-----DG----PTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGG 800
P F GP P R DG P GP L P P DG+PG G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGI 121
Query: 801 GGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP-----------LRFEGPIGQAGGGGFRFE 849
G +G +G G +GPPGP G P GP G G +
Sbjct: 122 PGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-----YP 176
Query: 850 GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-------VGGLRFEGPHGQPVGGL 902
G PG+ +G PG GP G P G G G P GL F+GP G+ G
Sbjct: 177 GPPGI--QGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-GEQ 232
Query: 903 RFDNPRGQP---------------VGGLRFEGGHGPSG-AAIRFDGPHGQPGGGIRFEGP 946
P G P G G GP G IR GP G PGG +G
Sbjct: 233 GLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIR--GPPGPPGGEKGEKGE 290
Query: 947 LLQQGVGMR--FEGPHGQ-SVAGL----RFEGQHNQLG--GNLRFEGPHGQPGVGIRFEG 997
+ G + +G +GQ + GL + G+ + G G GP G PG+ I G
Sbjct: 291 QGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Query: 998 PLVQQGGGMRFEGPSVPG-----GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPS----- 1047
+ G P +PG G I+GP G GP G + G PG P
Sbjct: 351 TGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP--PGAAVMGPPGPPGFPGERGQK 408
Query: 1048 --------LLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQH 1099
+P GL GQPG PG PGP GP G + P D + + GP
Sbjct: 409 GDEGPPGISIPGPPGLDGQPG-----APGLPGP---PGPAGPHIPPS-DEICE--PGPPG 457
Query: 1100 QQASRFDIPL-GLQGTRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQGLQFQRHE 1156
S D L G QG + D + + +GP P PG S G Q+ E
Sbjct: 458 PPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGE 516
Query: 1157 Q-------------IFDSPQGPNFNGPHG-PGN 1175
+ I +P P F G G PG+
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGD 549
Score = 33.9 bits (76), Expect = 1.3
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 23/125 (18%)
Query: 1054 GLHGQPG----PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPL 1109
G+ G+ G P E PG PG +GPPG + Q DG+P GP + R P
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP----GPPGPKGIRG--PP 95
Query: 1110 GLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIF-DSPQGPNFN 1168
GL G F P GP P G + E+ F SP P
Sbjct: 96 GLPG--FPGTPGLPGMPGHDGAPGPQGIP----------GCNGTKGERGFPGSPGFPGLQ 143
Query: 1169 GPHGP 1173
GP GP
Sbjct: 144 GPPGP 148
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 771 EGPNKLSPRIDGPPTPASLR----FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPG 826
+GP L P GPP FDG+ G+ G G G +G G P +GPPG
Sbjct: 1399 QGPQGL-PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPG 1457
Query: 827 PVGT 830
P GT
Sbjct: 1458 PPGT 1461
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 102 bits (254), Expect = 3e-21
Identities = 146/456 (32%), Positives = 181/456 (39%), Gaps = 105/456 (23%)
Query: 780 IDGPP-TPASLRFDGSPGQMGGGGPLRFE-----GPQGQLGGGCPLRFEGPPGPVGTPLR 833
I GPP P F G+ G+ G GP G QG G G PGP+G
Sbjct: 326 ITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEP 385
Query: 834 FE-GPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGP-GGQPVGGLRFEGHRGQ--PVG-- 887
+ GP G G G R G PG F G G EGP G Q + GL +G +G PVG
Sbjct: 386 GQPGPRGPEGVPGER--GLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQ 443
Query: 888 ------GLRFEGPHG--QPVGGLRFDNPRGQPVGGLRFEGGH-GPSG----AAIRFDGPH 934
G+ +G G P+G P GQ + G + E G GP+G I GP
Sbjct: 444 GPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPK 503
Query: 935 GQPGG-------GIRFE----GPLLQQGV-GMRF-EGPHGQSVAGLR-FEGQHNQLG--- 977
G+PG G+ E G + G+ G R EGP G+ G + EG+ G
Sbjct: 504 GEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQG 563
Query: 978 --GNLRFEGPHGQPGV-------GIRFEGPLVQQGGGMRFEGPSVPG----GGLRIEGPL 1024
G EGP G+PG+ G GP +G GP +PG GL I GP
Sbjct: 564 QRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDR---GGPGIPGFKGEPGLSIRGPK 620
Query: 1025 GQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQ--RFDGPPGQQ 1082
G GPR G G P L + DG G PGPR PG PGP R G G +
Sbjct: 621 GVQGPR----------GPVGAPGL--KGDGYPGVPGPR--GLPGPPGPMGLRGVGDTGAK 666
Query: 1083 VQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNA 1142
+P G P GP + +G QG + D GP PPG
Sbjct: 667 GEPGVRGPP----GPSGPRG------VGTQGPKGDTGQK--------GLPGP-PGPPGYG 707
Query: 1143 FNAPSQGLQFQRHEQIFDSPQG------PNFNGPHG 1172
SQG++ ++ Q F P+G P G HG
Sbjct: 708 ----SQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHG 739
Score = 102 bits (253), Expect = 4e-21
Identities = 130/414 (31%), Positives = 168/414 (40%), Gaps = 67/414 (16%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFE------GPPGPVGTPLRFEGPIGQAGGGGF 846
GSPG G GP +G G G P F+ GPPGP G+P IGQ G G
Sbjct: 310 GSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSP--GAPGIGQQGIKGE 367
Query: 847 RFE----GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGL 902
R + G+PG G PG GP G P G RG P G F GP G+
Sbjct: 368 RGQEGRPGAPGPIGVGEPGQPGPRGPEGVP-------GERGLP--GEGFPGPKGEKGS-- 416
Query: 903 RFDNPRG-QPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIR----FEGPLLQQGVGMRFE 957
+ P G Q + GL +G G G + GP G PG G + +GP+ G +
Sbjct: 417 --EGPTGPQGLQGLSIKGEKGDIG-PVGPQGPMGIPGIGSQGEQGIQGPIGPPGP----Q 469
Query: 958 GPHGQSVAGLRFE-GQHNQLGG----NLRFEGPHGQPG-VGIRFEGPLVQQGGGMRFEGP 1011
GP GQ + G + E GQ G + +GP G+PG +G+ + + + G +G
Sbjct: 470 GPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGE 529
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALR-FDGQPGQPSLLPRFDGLHGQP------GPRFE 1064
+ G EGP G+G P +G + G GQ LP +G G+P G
Sbjct: 530 AGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRG-LPGPEGPKGEPGIMGPFGMPGT 588
Query: 1065 RTPGQPGPQRFDGPPGQQVQPRFDGVP-QRFDGPQHQQASRFDIPLGLQGTRFDNHPSQR 1123
PG PGP+ G PG P F G P GP+ Q R P+G G + D +P
Sbjct: 589 SIPGPPGPKGDRGGPG---IPGFKGEPGLSIRGPKGVQGPRG--PVGAPGLKGDGYP--- 640
Query: 1124 LESVSFNQTGPYNDP-PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
GP P P G + E P GP +GP G G Q
Sbjct: 641 ------GVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGP--SGPRGVGTQ 686
Score = 77.0 bits (188), Expect = 1e-13
Identities = 106/347 (30%), Positives = 127/347 (36%), Gaps = 84/347 (24%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL 813
GP+ P GP + +GP I P P DG+ G+ G G GP+G
Sbjct: 487 GPTGPR----GPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPP 542
Query: 814 GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRF-------EGSPGLRFEGSPGGLRFE 866
G +G PGP G EG G G G R +G PG+ G
Sbjct: 543 G-------KGQPGPKGD----EGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIP 591
Query: 867 GPGGQ--PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVG--GLRFEGGHG 922
GP G GG G +G+P GL GP G PRG PVG GL+ +G G
Sbjct: 592 GPPGPKGDRGGPGIPGFKGEP--GLSIRGPKG-------VQGPRG-PVGAPGLKGDGYPG 641
Query: 923 PSGAAIRFDGPHGQPGGGIRFEGPLLQQGVG-------MRFEGPHGQSVAGLRFEGQHNQ 975
GP G PG GP+ +GVG GP G S G R G
Sbjct: 642 -------VPGPRGLPGP----PGPMGLRGVGDTGAKGEPGVRGPPGPS--GPRGVGTQGP 688
Query: 976 LG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEG 1033
G G GP G PG G + + + G F GP +G +G G P +G
Sbjct: 689 KGDTGQKGLPGPPGPPGYGSQ---GIKGEQGPQGFPGP---------KGTMGHGLPGQKG 736
Query: 1034 CHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG 1080
H R D G G G E PG PG Q GP G
Sbjct: 737 EHGERGD------------VGKKGDKGEIGE--PGSPGKQGLQGPKG 769
Score = 65.1 bits (157), Expect = 5e-10
Identities = 112/419 (26%), Positives = 151/419 (36%), Gaps = 119/419 (28%)
Query: 850 GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVG--------GLRFE--------- 892
G PG G+PG GP G P + E P G G R E
Sbjct: 251 GPPGTH--GNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKGD 308
Query: 893 ----GPHGQ--PVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGG------G 940
GP+G P G P G P G F+G G G GP+G PG G
Sbjct: 309 KGSPGPYGPKGPRGIQGITGPPGDP-GPKGFQGNKGEPGP----PGPYGSPGAPGIGQQG 363
Query: 941 IRFE---------------------GPLLQQGV-------GMRFEGPHG----------Q 962
I+ E GP +GV G F GP G Q
Sbjct: 364 IKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTGPQ 423
Query: 963 SVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFE-------GPLVQQG----------GG 1005
+ GL +G+ + G + +GP G PG+G + E GP QG G
Sbjct: 424 GLQGLSIKGEKGDI-GPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGE 482
Query: 1006 MRFEGPSVPGG--GLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQ----- 1058
+ GP+ P G G+ ++GP G+ G G PGQP +P DG G+
Sbjct: 483 VGQMGPTGPRGPVGIGVQGPKGEPGS----------IGLPGQPG-VPGEDGAAGKKGEAG 531
Query: 1059 -PGPRFERTP---GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGT 1114
PG R P GQPGP+ +G G + G+P +GP+ + P G+ GT
Sbjct: 532 LPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGP-EGPKGEPGIMG--PFGMPGT 588
Query: 1115 RFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
P + + G + PG + P +G+Q R +G + G GP
Sbjct: 589 SIPGPPGPKGDRGGPGIPG-FKGEPGLSIRGP-KGVQGPRGPVGAPGLKGDGYPGVPGP 645
Score = 57.0 bits (136), Expect = 1e-07
Identities = 83/287 (28%), Positives = 109/287 (37%), Gaps = 69/287 (24%)
Query: 893 GPHGQPVGGLRFDN-PRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQG 951
G HG P G++ + P+G P + E G G + G G+ G P ++
Sbjct: 254 GTHGNP--GIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERG---ECGKPGIKGD 308
Query: 952 VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP 1011
G GP+G G R G GP G PG F+G + G + P
Sbjct: 309 KGS--PGPYGPK--GPR---------GIQGITGPPGDPGPK-GFQGNKGEPGPPGPYGSP 354
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
PG +GQ G + E GQ G+P G PGP PGQPG
Sbjct: 355 GAPG--------IGQQGIKGER-------GQEGRP----------GAPGPIGVGEPGQPG 389
Query: 1072 PQRFDGPPGQQVQPRFDGVP-QRFDGPQHQQASRFDI-PLGLQGTRFDNHPSQRLESVSF 1129
P+ +G PG++ G+P + F GP+ ++ S P GLQG S + E
Sbjct: 390 PRGPEGVPGER------GLPGEGFPGPKGEKGSEGPTGPQGLQGL------SIKGEKGDI 437
Query: 1130 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
GP P SQG EQ P GP GP GP Q
Sbjct: 438 GPVGPQG--PMGIPGIGSQG------EQGIQGPIGP--PGPQGPAGQ 474
Score = 44.3 bits (103), Expect = 0.001
Identities = 43/127 (33%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 746 AEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPR--IDGPPTPASLRFDGSPGQMGGGGP 803
A+ P GP PS GP + +GP + + + GPP P GS G G GP
Sbjct: 665 AKGEPGVRGPPGPS----GPRGVGTQGPKGDTGQKGLPGPPGPPGY---GSQGIKGEQGP 717
Query: 804 LRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGL 863
F GP+G +G G P G G G G +G+ G G G P GSPG
Sbjct: 718 QGFPGPKGTMGHGLP----GQKGEHGE----RGDVGKKGDKG--EIGEP-----GSPGKQ 762
Query: 864 RFEGPGG 870
+GP G
Sbjct: 763 GLQGPKG 769
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 102 bits (253), Expect = 4e-21
Identities = 159/504 (31%), Positives = 191/504 (37%), Gaps = 98/504 (19%)
Query: 753 DGPSRPSVAR-----DGPTKMIFEGPNKLSPRIDGPPTPASLR-FDGSPGQ--------- 797
DGP+ P R GPT F GP GPP P G PGQ
Sbjct: 939 DGPAGPPGERGPNGPQGPTG--FPGPK-------GPPGPPGKDGLPGHPGQRGETGFQGK 989
Query: 798 MGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSP-GLRF 856
G GP GPQG G P+ G PGP G P +G G AG G + + P GL
Sbjct: 990 TGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGE-QGLPGLAGKEGTKGDPGPAGLPG 1048
Query: 857 EGSPGGLR-FEGPGG--QPVGGLRFEGHRGQ-----PVGGLRFEGPHGQ--PVGGLRFDN 906
+ P GLR F G G PVG L +G+ G P G GP G P+G
Sbjct: 1049 KDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG 1108
Query: 907 PRGQ--PVGGLRFEGGHGPSGAAIR--FDGPHGQPG--------------------GGIR 942
P+G P G G GP G A R GP G PG G
Sbjct: 1109 PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKG 1168
Query: 943 FEGPLLQQGV--GMRFEGPHGQ-SVAGLRFE-GQHNQLG--GNLRFEGPHGQPG----VG 992
+G +QG +GP GQ +G E G Q G G EGP G PG VG
Sbjct: 1169 SKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG 1228
Query: 993 IR-FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPR-----FEGCHALRFDGQPG 1044
++ GP ++G G + GP P G G G GP+ A+ G+PG
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPG 1288
Query: 1045 QPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQVQPRFDGV-----PQRFDG-- 1096
+ P G G PGP+ ER G+ GP GPPG + P DG P F G
Sbjct: 1289 EAG-EPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP 1347
Query: 1097 --PQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGP-----YNDPPGNAFNAPSQG 1149
P + D P G +G D P Q + GP PPG A QG
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGD--DGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Query: 1150 LQFQRHEQIFDSPQGPNFNGPHGP 1173
+ + E + P P GP GP
Sbjct: 1406 EKGAKGEAGLEGP--PGKTGPIGP 1427
Score = 99.8 bits (247), Expect = 2e-20
Identities = 127/403 (31%), Positives = 157/403 (38%), Gaps = 90/403 (22%)
Query: 782 GPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
GPP P + DG PG G GP GP GQ G GP G +G P +GP+G+
Sbjct: 691 GPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGE-KGPLGK 749
Query: 841 AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG 900
G G PG +G PG EGP G+ +G +G P GP G P+G
Sbjct: 750 PG-----LPGMPGA--DGPPGHPGKEGPPGE-------KGGQGPP-------GPQG-PIG 787
Query: 901 GLRFDNPRG----QPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGM 954
+ PRG + GL+ G F G G G G I GP + G
Sbjct: 788 ---YPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGP-- 842
Query: 955 RFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVP 1014
EGP G+ GP+G P GPL G + P +P
Sbjct: 843 --EGPKGRG--------------------GPNGDP-------GPLGPPGEKGKLGVPGLP 873
Query: 1015 GGGLRIEGPLGQ-GGPRFEGCHALRFD-GQPGQPSLLPRFDGLHGQPGPRFERTP----G 1068
G R +GP G G P F G + + G PG+P PR G G GPR ER P G
Sbjct: 874 GYPGR-QGPKGSIGFPGFPGANGEKGGRGTPGKPG--PR--GQRGPTGPRGERGPRGITG 928
Query: 1069 QPGPQRFD------GPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQ 1122
+PGP+ GPPG++ P P F GP+ P G G HP Q
Sbjct: 929 KPGPKGNSGGDGPAGPPGER-GPNGPQGPTGFPGPKGPPG-----PPGKDG--LPGHPGQ 980
Query: 1123 RLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
R E+ +TGP PPG G E+ P GP
Sbjct: 981 RGETGFQGKTGP-PGPPGVVGPQGPTGETGPMGERGHPGPPGP 1022
Score = 95.5 bits (236), Expect = 4e-19
Identities = 139/443 (31%), Positives = 174/443 (39%), Gaps = 87/443 (19%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GP P L G PG +G G +G G +G P +GPPGP G P G G+A
Sbjct: 559 GPAGPMGLT--GRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKP----GRRGRA 612
Query: 842 GGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGG 901
G G R G PG G G F+G G P +GHRG P GP G P G
Sbjct: 613 GSDGAR--GMPGQ--TGPKGDRGFDGLAGLP----GEKGHRGDP-------GPSGPP-GP 656
Query: 902 LRFDNPRGQ--PVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEG-PLLQQGVGMRF 956
D RG VG G GP G + GP G PG G +G P + VG +
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPRG-LLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQG 715
Query: 957 E-GPHGQS-----------VAGLRFEGQHNQLG-----GNLRFEGPHGQPGVGIRFEGPL 999
E GP GQ + G+ LG G +GP G PG EGP
Sbjct: 716 EPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGK----EGPP 771
Query: 1000 VQQGGGMRFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALRFD-GQPGQPSL-----LPRF 1052
++GG +GP P G + GP G +G G + + G+ G P +
Sbjct: 772 GEKGG----QGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGD 827
Query: 1053 DGLHGQPGPRFERTP----------GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQA 1102
G G PGPR E P G PGP GPPG++ + G+P + G Q +
Sbjct: 828 RGEIGPPGPRGEDGPEGPKGRGGPNGDPGPL---GPPGEKGKLGVPGLP-GYPGRQGPKG 883
Query: 1103 SRFDIP--------LGLQGTRFDNHP-SQRLESVSFNQTGP--YNDPPGNAFNAPSQGLQ 1151
S P G +GT P QR + + GP PG N+ G
Sbjct: 884 S-IGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA 942
Query: 1152 FQRHEQIFDSPQGP-NFNGPHGP 1173
E+ + PQGP F GP GP
Sbjct: 943 GPPGERGPNGPQGPTGFPGPKGP 965
Score = 95.1 bits (235), Expect = 5e-19
Identities = 113/342 (33%), Positives = 141/342 (41%), Gaps = 91/342 (26%)
Query: 754 GPSRPSVA--RDGPTKMIFEGP-----NKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRF 806
GP PS A DGP +GP N + G P A G PG G GGP
Sbjct: 1255 GPRGPSGAPGADGP-----QGPPGGIGNPGAVGEKGEPGEA-----GEPGLPGEGGPPGP 1304
Query: 807 EGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFE 866
+G +G+ G P GPPGP G P +GP G G G F G PG G PG +
Sbjct: 1305 KGERGEKGESGPSGAAGPPGPKGPP-GDDGPKGSPGPVG--FPGDPGP--PGEPGPAGQD 1359
Query: 867 GPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGA 926
GP G +G G+P G GP G+P P G P G GP G
Sbjct: 1360 GPPGD-------KGDDGEP-GQTGSPGPTGEP-------GPSGPP-------GKRGPPGP 1397
Query: 927 AIRFDGPHGQPG-GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGP 985
A GP G+ G G + E L EGP G++ G + +G
Sbjct: 1398 A----GPEGRQGEKGAKGEAGL---------EGPPGKT--------------GPIGPQGA 1430
Query: 986 HGQPGV-GIR-FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDG 1041
G+PG G+R GP+ +QG G +GP P G + G G GP+ G
Sbjct: 1431 PGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK----------G 1480
Query: 1042 QPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQ 1082
+ G P L+ GL G PG + E+ G PGPQ GP G+Q
Sbjct: 1481 EKGHPGLI----GLIGPPGEQGEKGDRGLPGPQGSSGPKGEQ 1518
Score = 94.0 bits (232), Expect = 1e-18
Identities = 138/439 (31%), Positives = 175/439 (39%), Gaps = 66/439 (15%)
Query: 772 GPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
GP + P P DG PG G EGP G+ GG +GPPGP G P
Sbjct: 739 GPPGEKGPLGKPGLPGMPGADGPPGHPGK------EGPPGEKGG------QGPPGPQG-P 785
Query: 832 LRFEGPIGQAGGGGFR-FEGSPGLR----FEGSPGGLRFEGPGGQ--PVGGLRFEGHRGQ 884
+ + GP G G G R +G+ G + F G G + +G G+ P G +G G
Sbjct: 786 IGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGP 845
Query: 885 PVGGLRFEGPHGQPVGGLRFDNPRGQ-PVGGL-RFEGGHGPSGAA--IRFDGPHGQPGG- 939
G GP+G P G L +G+ V GL + G GP G+ F G +G+ GG
Sbjct: 846 KGRG----GPNGDP-GPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR 900
Query: 940 GIRFE-GPLLQQG-VGMRFE----------GPHGQS----VAGLRFEGQHNQLGGNLRFE 983
G + GP Q+G G R E GP G S AG E N G F
Sbjct: 901 GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFP 960
Query: 984 GPHGQPGVGIR--FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRF 1039
GP G PG + G Q+G G GP P G + +GP G+ GP E H
Sbjct: 961 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGH---- 1016
Query: 1040 DGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRF---DGPPGQQVQPRFDGVPQRFDG 1096
G PG P GL G G E T G PGP DGPPG + P G+P
Sbjct: 1017 PGPPGPPG----EQGLPGLAGK--EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGA 1070
Query: 1097 PQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF-NQTGPYNDPPGNAFNAPSQGLQFQRH 1155
+ P G G+ + P+ + + GP PPG A + G + +
Sbjct: 1071 LGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGP-QGPPGPAGEKGAPGEKGPQG 1129
Query: 1156 EQIFDSPQGP-NFNGPHGP 1173
D QGP GP GP
Sbjct: 1130 PAGRDGLQGPVGLPGPAGP 1148
Score = 94.0 bits (232), Expect = 1e-18
Identities = 132/457 (28%), Positives = 170/457 (37%), Gaps = 119/457 (26%)
Query: 716 PRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPT--------- 766
P ED DK + P + + D + + P GP P + + GP+
Sbjct: 1151 PPGEDGDKGEIGEPGQKGSKGDKGE------QGPPGPTGPQGP-IGQPGPSGADGEPGPR 1203
Query: 767 --KMIFEGPNKLSPR-IDGPPTPASLRF----------DGSPGQMGGGGPLRFEGPQGQL 813
+ +F PR GPP P L+ G GQMG GP GP G
Sbjct: 1204 GQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAP 1263
Query: 814 GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFE------- 866
G P +GPPG +G P G +G+ G G G PGL EG P G + E
Sbjct: 1264 GADGP---QGPPGGIGNP----GAVGEKGEPGEA--GEPGLPGEGGPPGPKGERGEKGES 1314
Query: 867 GPGGQ-----PVGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRGQ--PVGGLRF 917
GP G P G +G +G P VG GP G+P P GQ P G
Sbjct: 1315 GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEP-------GPAGQDGPPGDKGD 1367
Query: 918 EGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHG-QSVAGLRFEGQHNQL 976
+G G +G+ GP G+PG GP ++G GP G Q G + E
Sbjct: 1368 DGEPGQTGSP----GPTGEPGPS----GPPGKRGPPGP-AGPEGRQGEKGAKGEAGLEGP 1418
Query: 977 GGNLRFEGPHGQPGV----GIR-FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGP 1029
G GP G PG G+R GP+ +QG G +GP P G + G G GP
Sbjct: 1419 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGP 1478
Query: 1030 RFEGCHA--LRFDGQPGQ-----------------------------PSLLPRFDGLHGQ 1058
+ E H + G PG+ P P GL G
Sbjct: 1479 KGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP 1538
Query: 1059 PGPRFER----------TPGQPGPQRFDGPPGQQVQP 1085
PGP+ + G PGP GPPG+ +QP
Sbjct: 1539 PGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQP 1575
Score = 92.0 bits (227), Expect = 4e-18
Identities = 143/461 (31%), Positives = 174/461 (37%), Gaps = 100/461 (21%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P GPP PA + G+PG+ G GP +G QG +G GP GPVG P +G
Sbjct: 1107 PGPQGPPGPAGEK--GAPGEKGPQGPAGRDGLQGPVG------LPGPAGPVGPPGE-DGD 1157
Query: 838 IGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGPGGQP--VGGLRFEGHRGQP--------V 886
G+ G G + GS G + E G PG +GP GQP G G RGQ
Sbjct: 1158 KGEIGEPGQK--GSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDE 1215
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQP-----VGGLRFEGGHGPSG--AAIRFDGPHGQPGG 939
G F GP G PVG P G+ VG + G GP G A DGP G PGG
Sbjct: 1216 GPRGFPGPPG-PVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGG 1274
Query: 940 GIRFEGPLLQQGV-------GMRFEG-PHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV 991
I G + ++G G+ EG P G G R E + G GP G PG
Sbjct: 1275 -IGNPGAVGEKGEPGEAGEPGLPGEGGPPGPK--GERGEKGESGPSGAAGPPGPKGPPGD 1331
Query: 992 GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQ------ 1045
+GP G + F G P G GP GQ GP + DG+PGQ
Sbjct: 1332 ----DGPKGSPGP-VGFPGDPGPPGE---PGPAGQDGPPGDKGD----DGEPGQTGSPGP 1379
Query: 1046 -----PSLLPRFDGLHGQPGPRFER-------------------------TPGQPGPQRF 1075
PS P G G GP + PG+PGP
Sbjct: 1380 TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGL 1439
Query: 1076 DGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHP-SQRLESVSFNQTGP 1134
G PG + G P DGP P GL G + D+ P ++ GP
Sbjct: 1440 RGIPGPVGEQGLPGSPGP-DGPPGPMG-----PPGLPGLKGDSGPKGEKGHPGLIGLIGP 1493
Query: 1135 YND--PPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
+ G+ QG + EQ P GP GP GP
Sbjct: 1494 PGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGP--IGPPGP 1532
Score = 74.3 bits (181), Expect = 8e-13
Identities = 117/373 (31%), Positives = 135/373 (36%), Gaps = 80/373 (21%)
Query: 750 PLFDGPSRPSVARDG-PTKM--IFEG--------PNKLSPRIDGPPTPASLRFDGSPGQM 798
P +D S PS G P I+EG K P I P + +G PG
Sbjct: 419 PYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEP----GMLIEGPPGPE 474
Query: 799 GGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG-GGGFRFEGSPG--LR 855
G G GP G + GP G VG P GP G+ G G G PG L
Sbjct: 475 GPAG---LPGPPGTM---------GPTGQVGDPGE-RGPPGRPGLPGADGLPGPPGTMLM 521
Query: 856 FEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP-VGG 914
GG G G V + L GP G P+G P G P GG
Sbjct: 522 LPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAG-PMGLTGRPGPVGPPGSGG 580
Query: 915 LRFEGGH-GPSG--AAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHG----QSVA 965
L+ E G GP G GP G+PG G +G G GP G +A
Sbjct: 581 LKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQ----TGPKGDRGFDGLA 636
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
GL E H G+ GP G PG G +G P G GP G
Sbjct: 637 GLPGEKGHR---GDPGPSGPPGPPG-----------DDGERGDDGEVGPRGLPGEPGPRG 682
Query: 1026 QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQP 1085
GP+ G PG P P G+ GQPGP+ G GPQ GPPGQQ P
Sbjct: 683 LLGPK----------GPPGPPG-PPGVTGMDGQPGPK-----GNVGPQGEPGPPGQQGNP 726
Query: 1086 RFDGVPQRFDGPQ 1098
G+P GPQ
Sbjct: 727 GAQGLP----GPQ 735
Score = 36.2 bits (82), Expect = 0.25
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPL 832
GPP P L G PG G G GP+G+ G P GPPG V PL
Sbjct: 1528 GPPGPPGL--PGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPL 1576
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 101 bits (252), Expect = 5e-21
Identities = 143/453 (31%), Positives = 178/453 (39%), Gaps = 70/453 (15%)
Query: 754 GPSRPSVARDGPTKMIFEGP--NKLSPRIDGPP----TPASLRFDGSPGQMGGGGPLRFE 807
GP P AR P G ++ P +DG P GSPG+ G GP+
Sbjct: 267 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR 326
Query: 808 GPQGQLGGGCPLRF------EGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPG 861
G G+ G P +G PGP G P GP+G AGG G F G+PG + E P
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPP----GPVGPAGGPG--FPGAPGAKGEAGPT 380
Query: 862 GLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGH 921
G R GP G +G RG+P G G P NP + G + G
Sbjct: 381 GAR--GPEGA-------QGPRGEP-------GTPGSPGPAGASGNPGTDGIPGAKGSAGA 424
Query: 922 GPSGAAIRFDGPHGQPG--GGIRFEGPLLQQG----VGMRFE-GPHGQ-SVAGLRFEGQH 973
A F GP G PG G GP Q G G + E GP G+ AG +G
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP--QGAP 482
Query: 974 NQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRF---EGPSVPGGGLRIEGPLGQGG 1028
G + G G+PG G+ GP ++G G F +G + P G GP G G
Sbjct: 483 GPAGEEGK-RGARGEPG-GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 540
Query: 1029 PRFEGCHALRFDGQPGQPSLLPRFDGLHGQP---GPRFERTP-GQPGPQRFDGPPGQQVQ 1084
P+ A G+PG+P LP GL G+P GP+ + P G PG GPPG Q
Sbjct: 541 PK----GANGDPGRPGEPG-LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA 595
Query: 1085 PRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDPPGNAF 1143
GV F GP+ G G + P R +TG PPG A
Sbjct: 596 RGQPGV-MGFPGPKGANGEP-----GKAGEKGLPGAPGLRGLPGKDGETGAAG-PPGPAG 648
Query: 1144 NAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
A +G Q F GP GP G G +
Sbjct: 649 PAGERGEQGAPGPSGFQGLPGP--PGPPGEGGK 679
Score = 95.9 bits (237), Expect = 3e-19
Identities = 132/405 (32%), Positives = 153/405 (37%), Gaps = 76/405 (18%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
+P GPP P+ DG G G GP G G G P +G PG G P EG
Sbjct: 913 NPGPPGPPGPSGK--DGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAEG 969
Query: 837 PIGQAGGGGFR-FEGSPGLRFE-GSPGGLRFEGPGGQP--VGGLRFEGHRGQP--VGGLR 890
P G G G R G PG R E G PG GP G+P G G RG P VG
Sbjct: 970 PPGPQGLAGQRGIVGLPGQRGERGFPG---LPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 891 FEGPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGA--AIRFDGPHGQPG-------- 938
GP G+P G D P G+ G +G G +GA A GP G PG
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRD-GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Query: 939 ---GGIRFEGPLLQQG-VGMR-FEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVG 992
G +GP+ G G R +GP G + G E L G+ F G G PG
Sbjct: 1086 GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP- 1144
Query: 993 IRFEGPLVQQGG-------GMRFE----GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDG 1041
GP QG G R GPS G I GP+G GPR
Sbjct: 1145 ---PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR----------- 1190
Query: 1042 QPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQV-QPRFDGVPQRFDGPQHQ 1100
G G+ GP PG PGP GPPG + F G+ R GP
Sbjct: 1191 ------------GRSGETGP--AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1236
Query: 1101 QASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDPPGNAFN 1144
Q R D G G R D L+S++ NQ P G+ N
Sbjct: 1237 QYMRADQAAG--GLRQHDAEVDATLKSLN-NQIESIRSPEGSRKN 1278
Score = 88.6 bits (218), Expect = 4e-17
Identities = 146/459 (31%), Positives = 165/459 (35%), Gaps = 104/459 (22%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P DGP S GP GP P GPP G PG+ G G +G
Sbjct: 725 PGTDGPKGAS----GPA-----GP----PGAQGPPG-----LQGMPGERGAAGIAGPKGD 766
Query: 810 QGQLG-----------GGCPLRFE-GPPGPVGT--PLRFEGPIGQAGGGGFRFEGSPGLR 855
+G +G GG L GPPGP G GP G AG G R G+PG R
Sbjct: 767 RGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR--GAPGER 824
Query: 856 FE-GSPGGLRFEGP---GGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP 911
E G PG F GP GQP G +G GQ G GP G P G P G
Sbjct: 825 GETGPPGPAGFAGPPGADGQP-GAKGEQGEAGQK-GDAGAPGPQG-PSGAPGPQGPTG-V 880
Query: 912 VGGLRFEGGHGPSGAAIRFDGPHGQ--PGGGIRFEGPLLQQGVGMRFEGPHGQS----VA 965
G G GP GA F G G+ P G GP GP G S
Sbjct: 881 TGPKGARGAQGPPGAT-GFPGAAGRVGPPGSNGNPGP----------PGPPGPSGKDGPK 929
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
G R + G +GP G PG E G EGP P G G +G
Sbjct: 930 GARGDSGPPGRAGEPGLQGPAGPPG-----EKGEPGDDGPSGAEGPPGPQGLAGQRGIVG 984
Query: 1026 QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGP---PGQ 1081
G R E F G PG PS P G G PG +R PG GP GP PG+
Sbjct: 985 LPGQRGE----RGFPGLPG-PSGEP---GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 1036
Query: 1082 QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGN 1141
+ P DG P R D G++G R E+ + G PPG+
Sbjct: 1037 EGSPGADGPPGR------------DGAAGVKG--------DRGETGAVGAPGA-PGPPGS 1075
Query: 1142 AFNAPSQGLQFQRHEQIFDSPQGPN-------FNGPHGP 1173
A G Q R E P GP+ GP GP
Sbjct: 1076 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP 1114
Score = 87.4 bits (215), Expect = 1e-16
Identities = 137/432 (31%), Positives = 161/432 (37%), Gaps = 99/432 (22%)
Query: 782 GPPTPASLRFD----GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
GPP PA + G PG G G G +G+ G P F GPPG G P +G
Sbjct: 792 GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP-GAKGE 850
Query: 838 IGQAGGGGFRFEGSPGLR----FEGSPGGLRFEGPGGQ-----PVGGLRFEGHRGQ--PV 886
G+AG G G+PG + G G GP G P G F G G+ P
Sbjct: 851 QGEAGQKG--DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIR--FDGPHGQPG--GGIR 942
G GP G P G D P+G G GP G A GP G PG G
Sbjct: 909 GSNGNPGPPGPP-GPSGKDGPKGA-------RGDSGPPGRAGEPGLQGPAGPPGEKGEPG 960
Query: 943 FEGPLLQQGVGMRFEGPHG-QSVAGLR-FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGP 998
+GP EGP G Q +AG R G Q G G GP G+PG
Sbjct: 961 DDGP-------SGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG-------- 1005
Query: 999 LVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLH 1056
+QG G GP P G + GP G+ P EG DG PG+ DG
Sbjct: 1006 --KQGAPGASGDRGPPGPVGPPGLTGPAGE--PGREGSPGA--DGPPGR-------DGAA 1052
Query: 1057 GQPGPRFER----TPGQPGPQRFDGPPGQ--QVQPRFDGVPQRFDGPQHQQASRFDIPLG 1110
G G R E PG PGP GP G + R + Q GP +R G
Sbjct: 1053 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR-----G 1107
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGP 1170
+QG + GP D G A +GL+ R F QG GP
Sbjct: 1108 IQGPQ-----------------GPRGD-KGEAGEPGERGLKGHRG---FTGLQG--LPGP 1144
Query: 1171 HGP-GNQSFSNP 1181
GP G+Q S P
Sbjct: 1145 PGPSGDQGASGP 1156
Score = 84.0 bits (206), Expect = 1e-15
Identities = 118/380 (31%), Positives = 143/380 (37%), Gaps = 78/380 (20%)
Query: 769 IFEGP-NKLSPRIDGPPTPASLR----FDGSPGQMGG---GGPLRFEGPQGQLG------ 814
+ +GP + PR GPP PA F G+PG+ G GP+ GP G G
Sbjct: 198 VMQGPMGPMGPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDG 255
Query: 815 -GGCPLRF-----EGPPGPVGTP--------------LRFEGPIGQAGGGGFRFE-GSPG 853
G P + GP G G P +G G+AG G + E GSPG
Sbjct: 256 EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPG 315
Query: 854 LRFEGSPGGLRFEGPGGQ-----PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPR 908
GSPG + G G+ P G G+ GQP G GP G P GG F
Sbjct: 316 --ENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP-GPAGPPGPVG-PAGGPGFPGAP 371
Query: 909 GQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLR 968
G G G GP GA GP G+PG GP G P + G +
Sbjct: 372 GAK-GEAGPTGARGPEGA----QGPRGEPGTP-GSPGPAGASG------NPGTDGIPGAK 419
Query: 969 FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG-----GGMRFEGPSVPGGGLRIEGP 1023
+ G F GP G PG GPL +G G F+G P G GP
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQ-GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 1024 LGQGGPR-FEGCHALRFD-------GQPGQPSL-----LPRFDGLHGQPGPRFERTP-GQ 1069
G GP EG R + G PG+ P DGL G G ER P G
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 538
Query: 1070 PGPQRFDGPPGQQVQPRFDG 1089
GP+ +G PG+ +P G
Sbjct: 539 AGPKGANGDPGRPGEPGLPG 558
Score = 80.5 bits (197), Expect = 1e-14
Identities = 144/450 (32%), Positives = 168/450 (37%), Gaps = 92/450 (20%)
Query: 772 GPNKLSPRIDGPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT 830
GP K P GP R D G G+ G GP +G G G P GPPGP G
Sbjct: 117 GP-KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 175
Query: 831 -----------------------------PLRFEGPIGQAGGGGFR-FEGSPGLRFE-GS 859
P+ GP G AG G + F+G+PG E G
Sbjct: 176 GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGV 235
Query: 860 PGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP-VGGLR-- 916
G + GP G P G +G G+P G GP G P G F G P V G R
Sbjct: 236 SGPMGPRGPPGPP-GKPGDDGEAGKP-GKAGERGPPG-PQGARGFPGTPGLPGVKGHRGY 292
Query: 917 --FEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV-GMRFE-GPHGQSVAGLRFEGQ 972
+G G +GA G G PG GP+ +G+ G R GP G AG R
Sbjct: 293 PGLDGAKGEAGAP-GVKGESGSPGEN-GSPGPMGPRGLPGERGRTGPAG--AAGAR---- 344
Query: 973 HNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG--GGLRIEGPLGQGGPR 1030
GN GP G P GP+ G GP PG G GP G GP
Sbjct: 345 -----GNDGQPGPAGPP-------GPVGPAG------GPGFPGAPGAKGEAGPTGARGP- 385
Query: 1031 FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV 1090
EG R G+PG P P G G PG T G PG + G PG P F G
Sbjct: 386 -EGAQGPR--GEPGTPG-SPGPAGASGNPG-----TDGIPGAKGSAGAPGIAGAPGFPG- 435
Query: 1091 PQRFDGPQHQQASRFDIPLGLQG-TRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQG 1149
P+ GPQ PLG +G T + E + GP P G A +G
Sbjct: 436 PRGPPGPQGATG-----PLGPKGQTGEPGIAGFKGEQGPKGEPGPAG-PQGAPGPAGEEG 489
Query: 1150 LQFQRHEQIFDSPQGPNFNGPHG-PGNQSF 1178
+ R E P GP G G PGN+ F
Sbjct: 490 KRGARGEPGGVGPIGP--PGERGAPGNRGF 517
Score = 39.7 bits (91), Expect = 0.023
Identities = 48/164 (29%), Positives = 57/164 (34%), Gaps = 35/164 (21%)
Query: 1025 GQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPR---FERTP----------GQPG 1071
GQ GP+ GQ G+P + G G PGP+ E+ P G PG
Sbjct: 98 GQPGPK----------GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPG 147
Query: 1072 PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQ 1131
P+ DG PG P G P GP + + G FD V
Sbjct: 148 PRGRDGEPGTPGNPGPPGPP----GPPGPPGLGGNFAAQMAG-GFDEKAGGAQLGVMQGP 202
Query: 1132 TGPY--NDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
GP PPG A QG Q E P P +GP GP
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNPGE-----PGEPGVSGPMGP 241
Score = 39.3 bits (90), Expect = 0.030
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 30/162 (18%)
Query: 713 LKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEG 772
++ P+ DK P R GL ++ T L + P GPS A GP G
Sbjct: 1108 IQGPQGPRGDKGEAGEPGER--GLKGHRGFTGL-QGLPGPPGPSGDQGA-SGPA-----G 1158
Query: 773 PNKLSPRIDGPPTPASLR----FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPV 828
P+ PR GPP P +G PG +G GP G G+ G P GPPGP
Sbjct: 1159 PS--GPR--GPPGPVGPSGKDGANGIPGPIGPPGP---RGRSGETGPAGPPGNPGPPGPP 1211
Query: 829 GTPLRFEGP---IGQAGGGGFRFEGSPGLRF---EGSPGGLR 864
G P GP + G G R +G L++ + + GGLR
Sbjct: 1212 GPP----GPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1249
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 101 bits (252), Expect = 5e-21
Identities = 143/453 (31%), Positives = 178/453 (39%), Gaps = 70/453 (15%)
Query: 754 GPSRPSVARDGPTKMIFEGP--NKLSPRIDGPP----TPASLRFDGSPGQMGGGGPLRFE 807
GP P AR P G ++ P +DG P GSPG+ G GP+
Sbjct: 198 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR 257
Query: 808 GPQGQLGGGCPLRF------EGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPG 861
G G+ G P +G PGP G P GP+G AGG G F G+PG + E P
Sbjct: 258 GLPGERGRTGPAGAAGARGNDGQPGPAGPP----GPVGPAGGPG--FPGAPGAKGEAGPT 311
Query: 862 GLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGH 921
G R GP G +G RG+P G G P NP + G + G
Sbjct: 312 GAR--GPEGA-------QGPRGEP-------GTPGSPGPAGASGNPGTDGIPGAKGSAGA 355
Query: 922 GPSGAAIRFDGPHGQPG--GGIRFEGPLLQQG----VGMRFE-GPHGQ-SVAGLRFEGQH 973
A F GP G PG G GP Q G G + E GP G+ AG +G
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP--QGAP 413
Query: 974 NQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRF---EGPSVPGGGLRIEGPLGQGG 1028
G + G G+PG G+ GP ++G G F +G + P G GP G G
Sbjct: 414 GPAGEEGK-RGARGEPG-GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 471
Query: 1029 PRFEGCHALRFDGQPGQPSLLPRFDGLHGQP---GPRFERTP-GQPGPQRFDGPPGQQVQ 1084
P+ A G+PG+P LP GL G+P GP+ + P G PG GPPG Q
Sbjct: 472 PK----GANGDPGRPGEPG-LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA 526
Query: 1085 PRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDPPGNAF 1143
GV F GP+ G G + P R +TG PPG A
Sbjct: 527 RGQPGV-MGFPGPKGANGEP-----GKAGEKGLPGAPGLRGLPGKDGETGAAG-PPGPAG 579
Query: 1144 NAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
A +G Q F GP GP G G +
Sbjct: 580 PAGERGEQGAPGPSGFQGLPGP--PGPPGEGGK 610
Score = 95.9 bits (237), Expect = 3e-19
Identities = 132/405 (32%), Positives = 153/405 (37%), Gaps = 76/405 (18%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
+P GPP P+ DG G G GP G G G P +G PG G P EG
Sbjct: 844 NPGPPGPPGPSGK--DGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAEG 900
Query: 837 PIGQAGGGGFR-FEGSPGLRFE-GSPGGLRFEGPGGQP--VGGLRFEGHRGQP--VGGLR 890
P G G G R G PG R E G PG GP G+P G G RG P VG
Sbjct: 901 PPGPQGLAGQRGIVGLPGQRGERGFPG---LPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 891 FEGPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGA--AIRFDGPHGQPG-------- 938
GP G+P G D P G+ G +G G +GA A GP G PG
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRD-GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Query: 939 ---GGIRFEGPLLQQG-VGMR-FEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVG 992
G +GP+ G G R +GP G + G E L G+ F G G PG
Sbjct: 1017 GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP- 1075
Query: 993 IRFEGPLVQQGG-------GMRFE----GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDG 1041
GP QG G R GPS G I GP+G GPR
Sbjct: 1076 ---PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR----------- 1121
Query: 1042 QPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQV-QPRFDGVPQRFDGPQHQ 1100
G G+ GP PG PGP GPPG + F G+ R GP
Sbjct: 1122 ------------GRSGETGP--AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1167
Query: 1101 QASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDPPGNAFN 1144
Q R D G G R D L+S++ NQ P G+ N
Sbjct: 1168 QYMRADQAAG--GLRQHDAEVDATLKSLN-NQIESIRSPEGSRKN 1209
Score = 88.6 bits (218), Expect = 4e-17
Identities = 146/459 (31%), Positives = 165/459 (35%), Gaps = 104/459 (22%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P DGP S GP GP P GPP G PG+ G G +G
Sbjct: 656 PGTDGPKGAS----GPA-----GP----PGAQGPPG-----LQGMPGERGAAGIAGPKGD 697
Query: 810 QGQLG-----------GGCPLRFE-GPPGPVGT--PLRFEGPIGQAGGGGFRFEGSPGLR 855
+G +G GG L GPPGP G GP G AG G R G+PG R
Sbjct: 698 RGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR--GAPGER 755
Query: 856 FE-GSPGGLRFEGP---GGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP 911
E G PG F GP GQP G +G GQ G GP G P G P G
Sbjct: 756 GETGPPGPAGFAGPPGADGQP-GAKGEQGEAGQK-GDAGAPGPQG-PSGAPGPQGPTG-V 811
Query: 912 VGGLRFEGGHGPSGAAIRFDGPHGQ--PGGGIRFEGPLLQQGVGMRFEGPHGQS----VA 965
G G GP GA F G G+ P G GP GP G S
Sbjct: 812 TGPKGARGAQGPPGAT-GFPGAAGRVGPPGSNGNPGP----------PGPPGPSGKDGPK 860
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
G R + G +GP G PG E G EGP P G G +G
Sbjct: 861 GARGDSGPPGRAGEPGLQGPAGPPG-----EKGEPGDDGPSGAEGPPGPQGLAGQRGIVG 915
Query: 1026 QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGP---PGQ 1081
G R E F G PG PS P G G PG +R PG GP GP PG+
Sbjct: 916 LPGQRGE----RGFPGLPG-PSGEP---GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 967
Query: 1082 QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGN 1141
+ P DG P R D G++G R E+ + G PPG+
Sbjct: 968 EGSPGADGPPGR------------DGAAGVKG--------DRGETGAVGAPGA-PGPPGS 1006
Query: 1142 AFNAPSQGLQFQRHEQIFDSPQGPN-------FNGPHGP 1173
A G Q R E P GP+ GP GP
Sbjct: 1007 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP 1045
Score = 87.4 bits (215), Expect = 1e-16
Identities = 137/432 (31%), Positives = 161/432 (37%), Gaps = 99/432 (22%)
Query: 782 GPPTPASLRFD----GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
GPP PA + G PG G G G +G+ G P F GPPG G P +G
Sbjct: 723 GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP-GAKGE 781
Query: 838 IGQAGGGGFRFEGSPGLR----FEGSPGGLRFEGPGGQ-----PVGGLRFEGHRGQ--PV 886
G+AG G G+PG + G G GP G P G F G G+ P
Sbjct: 782 QGEAGQKG--DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIR--FDGPHGQPG--GGIR 942
G GP G P G D P+G G GP G A GP G PG G
Sbjct: 840 GSNGNPGPPGPP-GPSGKDGPKGA-------RGDSGPPGRAGEPGLQGPAGPPGEKGEPG 891
Query: 943 FEGPLLQQGVGMRFEGPHG-QSVAGLR-FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGP 998
+GP EGP G Q +AG R G Q G G GP G+PG
Sbjct: 892 DDGP-------SGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG-------- 936
Query: 999 LVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLH 1056
+QG G GP P G + GP G+ P EG DG PG+ DG
Sbjct: 937 --KQGAPGASGDRGPPGPVGPPGLTGPAGE--PGREGSPGA--DGPPGR-------DGAA 983
Query: 1057 GQPGPRFER----TPGQPGPQRFDGPPGQ--QVQPRFDGVPQRFDGPQHQQASRFDIPLG 1110
G G R E PG PGP GP G + R + Q GP +R G
Sbjct: 984 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR-----G 1038
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGP 1170
+QG + GP D G A +GL+ R F QG GP
Sbjct: 1039 IQGPQ-----------------GPRGD-KGEAGEPGERGLKGHRG---FTGLQG--LPGP 1075
Query: 1171 HGP-GNQSFSNP 1181
GP G+Q S P
Sbjct: 1076 PGPSGDQGASGP 1087
Score = 84.0 bits (206), Expect = 1e-15
Identities = 118/380 (31%), Positives = 143/380 (37%), Gaps = 78/380 (20%)
Query: 769 IFEGP-NKLSPRIDGPPTPASLR----FDGSPGQMGG---GGPLRFEGPQGQLG------ 814
+ +GP + PR GPP PA F G+PG+ G GP+ GP G G
Sbjct: 129 VMQGPMGPMGPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDG 186
Query: 815 -GGCPLRF-----EGPPGPVGTP--------------LRFEGPIGQAGGGGFRFE-GSPG 853
G P + GP G G P +G G+AG G + E GSPG
Sbjct: 187 EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPG 246
Query: 854 LRFEGSPGGLRFEGPGGQ-----PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPR 908
GSPG + G G+ P G G+ GQP G GP G P GG F
Sbjct: 247 --ENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP-GPAGPPGPVG-PAGGPGFPGAP 302
Query: 909 GQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLR 968
G G G GP GA GP G+PG GP G P + G +
Sbjct: 303 GAK-GEAGPTGARGPEGA----QGPRGEPGTP-GSPGPAGASG------NPGTDGIPGAK 350
Query: 969 FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG-----GGMRFEGPSVPGGGLRIEGP 1023
+ G F GP G PG GPL +G G F+G P G GP
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQ-GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 1024 LGQGGPR-FEGCHALRFD-------GQPGQPSL-----LPRFDGLHGQPGPRFERTP-GQ 1069
G GP EG R + G PG+ P DGL G G ER P G
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 469
Query: 1070 PGPQRFDGPPGQQVQPRFDG 1089
GP+ +G PG+ +P G
Sbjct: 470 AGPKGANGDPGRPGEPGLPG 489
Score = 80.5 bits (197), Expect = 1e-14
Identities = 144/450 (32%), Positives = 168/450 (37%), Gaps = 92/450 (20%)
Query: 772 GPNKLSPRIDGPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT 830
GP K P GP R D G G+ G GP +G G G P GPPGP G
Sbjct: 48 GP-KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 106
Query: 831 -----------------------------PLRFEGPIGQAGGGGFR-FEGSPGLRFE-GS 859
P+ GP G AG G + F+G+PG E G
Sbjct: 107 GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGV 166
Query: 860 PGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP-VGGLR-- 916
G + GP G P G +G G+P G GP G P G F G P V G R
Sbjct: 167 SGPMGPRGPPGPP-GKPGDDGEAGKP-GKAGERGPPG-PQGARGFPGTPGLPGVKGHRGY 223
Query: 917 --FEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV-GMRFE-GPHGQSVAGLRFEGQ 972
+G G +GA G G PG GP+ +G+ G R GP G AG R
Sbjct: 224 PGLDGAKGEAGAP-GVKGESGSPGEN-GSPGPMGPRGLPGERGRTGPAG--AAGAR---- 275
Query: 973 HNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG--GGLRIEGPLGQGGPR 1030
GN GP G P GP+ G GP PG G GP G GP
Sbjct: 276 -----GNDGQPGPAGPP-------GPVGPAG------GPGFPGAPGAKGEAGPTGARGP- 316
Query: 1031 FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV 1090
EG R G+PG P P G G PG T G PG + G PG P F G
Sbjct: 317 -EGAQGPR--GEPGTPG-SPGPAGASGNPG-----TDGIPGAKGSAGAPGIAGAPGFPG- 366
Query: 1091 PQRFDGPQHQQASRFDIPLGLQG-TRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQG 1149
P+ GPQ PLG +G T + E + GP P G A +G
Sbjct: 367 PRGPPGPQGATG-----PLGPKGQTGEPGIAGFKGEQGPKGEPGPAG-PQGAPGPAGEEG 420
Query: 1150 LQFQRHEQIFDSPQGPNFNGPHG-PGNQSF 1178
+ R E P GP G G PGN+ F
Sbjct: 421 KRGARGEPGGVGPIGP--PGERGAPGNRGF 448
Score = 39.3 bits (90), Expect = 0.030
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 30/162 (18%)
Query: 713 LKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEG 772
++ P+ DK P R GL ++ T L + P GPS A GP G
Sbjct: 1039 IQGPQGPRGDKGEAGEPGER--GLKGHRGFTGL-QGLPGPPGPSGDQGA-SGPA-----G 1089
Query: 773 PNKLSPRIDGPPTPASLR----FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPV 828
P+ PR GPP P +G PG +G GP G G+ G P GPPGP
Sbjct: 1090 PS--GPR--GPPGPVGPSGKDGANGIPGPIGPPGP---RGRSGETGPAGPPGNPGPPGPP 1142
Query: 829 GTPLRFEGP---IGQAGGGGFRFEGSPGLRF---EGSPGGLR 864
G P GP + G G R +G L++ + + GGLR
Sbjct: 1143 GPP----GPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1180
Score = 38.5 bits (88), Expect = 0.051
Identities = 44/148 (29%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 1041 GQPGQPSLLPRFDGLHGQPGPR---FERTP----------GQPGPQRFDGPPGQQVQPRF 1087
GQ G+P + G G PGP+ E+ P G PGP+ DG PG P
Sbjct: 35 GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGP 94
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPY--NDPPGNAFNA 1145
G P GP + + G FD V GP PPG A
Sbjct: 95 PGPP----GPPGPPGLGGNFAAQMAG-GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 149
Query: 1146 PSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
QG Q E P P +GP GP
Sbjct: 150 GPQGFQGNPGE-----PGEPGVSGPMGP 172
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 101 bits (251), Expect = 6e-21
Identities = 133/376 (35%), Positives = 155/376 (41%), Gaps = 75/376 (19%)
Query: 753 DGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEG---- 808
DGP P R P +GPN P GPP P DG PG G G + F+G
Sbjct: 781 DGPHGPPGERGLPGP---QGPNGF-PGPKGPPGPPGK--DGLPGHPGQRGEVGFQGKTGP 834
Query: 809 --------PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-GSPGLRFEGS 859
PQG G P+ G PGP G P +G G AG G + + G PG +
Sbjct: 835 PGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGPPGAPGKDG 893
Query: 860 PGGLR-FEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLR 916
P GLR F G G P GG +G+ G P G GP G P G R G P+G
Sbjct: 894 PAGLRGFPGERGLPGTAGGPGLKGNEG-PSGP---PGPAGSP--GERGAAGSGGPIGPPG 947
Query: 917 FEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV--GMRFEGPHG-QSVAGLRFEG 971
G GP GAA G G PG G I GP + GV + GP G VAG +G
Sbjct: 948 RPGPQGPPGAA----GEKGVPGEKGPI---GPTGRDGVQGPVGLPGPAGPPGVAG--EDG 998
Query: 972 QHNQLG-----GNLRFEGPHGQPGVGIRFEGPL--VQQGGGMRFEGPSVPGGGLRIEGPL 1024
++G G +G HG PG GP+ V Q G +G PG GP
Sbjct: 999 DKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPGAAGADGE--PGA----RGPQ 1048
Query: 1025 GQGGPR-FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQ 1082
G G + EG F+G PG GL G PGP E+ G GP GPPG
Sbjct: 1049 GHFGAKGDEGTRG--FNGPPGP-------IGLQGLPGPSGEKGETGDVGPMGPPGPPG-- 1097
Query: 1083 VQPRFDGVPQRFDGPQ 1098
PR P DGPQ
Sbjct: 1098 --PRGPAGPNGADGPQ 1111
Score = 94.4 bits (233), Expect = 8e-19
Identities = 136/417 (32%), Positives = 161/417 (38%), Gaps = 93/417 (22%)
Query: 773 PNKLSPR-IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
P + PR + GP P + G PG G GP +GP+G LG P GPPG GTP
Sbjct: 517 PGESGPRGLLGPKGPPGI--PGPPGVRGMDGP---QGPKGSLG---PQGEPGPPGQQGTP 568
Query: 832 --LRFEGPIGQAGGGGFRF-EGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGG 888
GP G G G + +G PGL G PG +GP G P G G P G
Sbjct: 569 GTQGLPGPQGAIGPHGEKGPQGKPGL--PGMPGS---DGPPGHP-------GKEGPP-GT 615
Query: 889 LRFEGPHGQPVGGLRFDNPRG-QPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEG 945
+GP G P G L + PRG + V G+R GH G G PG G I +G
Sbjct: 616 KGNQGPSG-PQGPLGYPGPRGVKGVDGIRGLKGHKGE------KGEDGFPGFKGDIGVKG 668
Query: 946 PLLQQGV-GMRF----EGPHGQS-------VAGLRFEGQHNQLG-----GNLRFEGPHGQ 988
+ GV G R EGP G++ GL G+ +LG G +GP G
Sbjct: 669 DRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLM--GEKGKLGVPGLPGYPGRQGPKGS 726
Query: 989 PGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL 1048
G F G ++ G G S P G GP GQ GPR A G G
Sbjct: 727 LGFP-GFPGASGEK-GARGLSGKSGPRGERGPTGPRGQRGPR----GATGKSGAKGTSG- 779
Query: 1049 LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIP 1108
DG HG PG R PG GP F GP G P DG+P
Sbjct: 780 ---GDGPHGPPGER--GLPGPQGPNGFPGPKGPPGPPGKDGLP----------------- 817
Query: 1109 LGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
HP QR E +TGP PPG + G E+ P GP
Sbjct: 818 ---------GHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGERGHPGPPGP 864
Score = 91.3 bits (225), Expect = 7e-18
Identities = 114/341 (33%), Positives = 137/341 (40%), Gaps = 43/341 (12%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP--LRFEGPIGQ 840
P P DG PG G GP +G QG G PL + GP G G +G G+
Sbjct: 592 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 651
Query: 841 AGGGGFR-FEGSPGLRFE----GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPH 895
G GF F+G G++ + G PG +GP G P G G G P G + +G
Sbjct: 652 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-PKGRTGPTGDPGPP-GLMGEKGKL 709
Query: 896 GQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMR 955
G P GL R P G L F G G SG G G G GP ++G
Sbjct: 710 GVP--GLPGYPGRQGPKGSLGFPGFPGASGEK----GARGLSGKS----GPRGERGP--- 756
Query: 956 FEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG 1015
GP GQ G R + G +GPHG PG E L G F GP P
Sbjct: 757 -TGPRGQR--GPRGATGKSGAKGTSGGDGPHGPPG-----ERGLPGPQGPNGFPGPKGPP 808
Query: 1016 GGLRIEGPLGQGGPRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFERTPGQPGP 1072
G +G G G R E + F G+ PG P ++ G G+ GP ER G PGP
Sbjct: 809 GPPGKDGLPGHPGQRGE----VGFQGKTGPPGPPGVVGP-QGAAGETGPMGER--GHPGP 861
Query: 1073 QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
GPPG+Q P G P A D P GL+G
Sbjct: 862 P---GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRG 899
Score = 87.0 bits (214), Expect = 1e-16
Identities = 119/390 (30%), Positives = 149/390 (38%), Gaps = 79/390 (20%)
Query: 762 RDGPTKMI-FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLR 820
+DGP + F G L GP G+ G G GP G +G G G P+
Sbjct: 891 KDGPAGLRGFPGERGLPGTAGGPG------LKGNEGPSGPPGPAGSPGERGAAGSGGPIG 944
Query: 821 FEGPPGPVGTPLRF--------EGPIGQAGGGGFRF-------EGSPGLRFE-------G 858
G PGP G P +GPIG G G + G PG+ E G
Sbjct: 945 PPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 1004
Query: 859 SPGGLRFEGPGGQ-----------PVGGLRFEGHRGQP--------------VGGLRFEG 893
PG +G G+ PVG G G+P G F G
Sbjct: 1005 DPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1064
Query: 894 PHGQPVGGLRFDNPRGQ-----PVGGLRFEGGHGPSGAA--IRFDGPHGQPGGGIRFEGP 946
P G P+G P G+ VG + G GP G A DGP G P GG+ GP
Sbjct: 1065 PPG-PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP-GGVGNLGP 1122
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--G 1004
++G P Q G++ G + G +G GQPG GP +G G
Sbjct: 1123 PGEKGEPGESGSPGIQGEPGVK--GPRGERGE----KGESGQPGE----PGPPGPKGPTG 1172
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR 1062
+G P G GP G+GGPR +G R DG+PGQP P G +G PGP
Sbjct: 1173 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-SPGPTGENGPPGPL 1231
Query: 1063 FERTP-GQPGPQRFDGPPGQQVQPRFDGVP 1091
+R P G PG + G G + P G P
Sbjct: 1232 GKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1261
Score = 81.3 bits (199), Expect = 7e-15
Identities = 135/453 (29%), Positives = 166/453 (36%), Gaps = 103/453 (22%)
Query: 703 QRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAE----DRPLFDGPSRP 758
QRSP L RP+ ++ D + + L L E R L P
Sbjct: 245 QRSPQQQPSRLHRPQNQEPQSQ--DPTPGEEEEILESSLLPPLEEAAHGPRGLKGEKGEP 302
Query: 759 SVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCP 818
+V G M+ EGP GP PA L G PG G GP+ G +G G
Sbjct: 303 AVLEPG---MLVEGP-------PGPEGPAGLI--GPPGIQGNPGPVGDPGERGPPGRAGL 350
Query: 819 LRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEG--SPGGLRFEGPGGQPVGGL 876
+G PGP GT L G GG + + + L GP G
Sbjct: 351 PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP----- 405
Query: 877 RFEGHRGQPVGGLRFEGPHGQPVG-GLRFDNPRGQPVGGLRFEGGHGPSGAAIR-----F 930
G+ G+P GP GQP GL+ ++ P G +G GP G A R
Sbjct: 406 --MGYTGRP-------GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA 456
Query: 931 DGPHGQPG-----GGIRFEG-PLLQQGVGMR-------FEGPHGQSVAGLRFEGQHNQLG 977
DG G PG G F+G P L G R GP G+ G R G ++G
Sbjct: 457 DGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED--GER--GDDGEIG 512
Query: 978 --------GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGP 1029
G GP G PG+ GP +G +GP P G L GP G+ GP
Sbjct: 513 PRGLPGESGPRGLLGPKGPPGI----PGPPGVRG----MDGPQGPKGSL---GPQGEPGP 561
Query: 1030 RFEGCHALRFDGQPGQPSL--LPRFDGL---HGQPGPRFERTPGQPGPQRFDGPPGQQVQ 1084
GQ G P LP G HG+ GP + PG PG DGPPG
Sbjct: 562 ----------PGQQGTPGTQGLPGPQGAIGPHGEKGP--QGKPGLPGMPGSDGPPG---H 606
Query: 1085 PRFDGVP--QRFDGPQHQQASRFDIPLGLQGTR 1115
P +G P + GP Q PLG G R
Sbjct: 607 PGKEGPPGTKGNQGPSGPQG-----PLGYPGPR 634
Score = 81.3 bits (199), Expect = 7e-15
Identities = 102/319 (31%), Positives = 123/319 (38%), Gaps = 89/319 (27%)
Query: 781 DGPP-TPASLRFDGSPGQMGGGGPLRFEGPQG---------QLGGGCPLRFEGPPGPVGT 830
DGP P + F G PG G GGP +G +G Q G P GPPGP+G
Sbjct: 1174 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1233
Query: 831 PLRFEGPIGQAGG----GGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPV 886
GP G G GG +G PG G+PG GP G P G +G RG P
Sbjct: 1234 ----RGPAGSPGSEGRQGGKGAKGDPGA--IGAPGKTGPVGPAG-PAGKPGPDGLRGLP- 1285
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
G + G G+P G P G PVG G G +GA G G PG
Sbjct: 1286 GSV---GQQGRP-GATGQAGPPG-PVGPPGLPGLRGDAGA----KGEKGHPG-------- 1328
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGM 1006
+G+ GP G+ +G+ G GP G PG Q G M
Sbjct: 1329 ----LIGL--IGPPGE-------QGEKGDRG----LPGPQGSPG-----------QKGEM 1360
Query: 1007 RFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERT 1066
G S GP+G GGP G PG P+ G G GP+ E+
Sbjct: 1361 GIPGAS---------GPIGPGGP----------PGLPG-PAGPKGAKGATGPGGPKGEK- 1399
Query: 1067 PGQPGPQRFDGPPGQQVQP 1085
G GP GPPG+ +QP
Sbjct: 1400 -GVQGPPGHPGPPGEVIQP 1417
Score = 78.6 bits (192), Expect = 4e-14
Identities = 147/486 (30%), Positives = 167/486 (34%), Gaps = 113/486 (23%)
Query: 759 SVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL----- 813
S DGP EGP + P P + G G G G +GP+G L
Sbjct: 678 SRGEDGP-----EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 732
Query: 814 -------------GGGCPLRFEGPPGPVGTPLRFEGPIGQAG-------GGGFRFEGSPG 853
G P GP GP G GP G G GG G PG
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQ----RGPRGATGKSGAKGTSGGDGPHGPPG 788
Query: 854 LR-FEGSPGGLRFEGPGGQ--PVGGLRFEGHRGQ-----------PVGGLRFEGPHGQ-- 897
R G G F GP G P G GH GQ P G GP G
Sbjct: 789 ERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAG 848
Query: 898 ---PVGGLRFDNPRGQP--------VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
P+G P G P G +G GP GA + DGP G G P
Sbjct: 849 ETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLP 907
Query: 947 LLQQGVGMR-FEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
G G++ EGP G AG E GG + GP G+PG +GP G
Sbjct: 908 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPI---GPPGRPGP----QGPPGAAGE 960
Query: 1004 -GGMRFEGPSVPGGGLRIEGPLGQGGPRF-EGCHALRFD----GQPGQPSLLPRFDGLHG 1057
G +GP P G ++GP+G GP G D G PGQ G HG
Sbjct: 961 KGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGN-KGEHG 1019
Query: 1058 QPGPRFERTP-GQPGPQRFDGPPGQQ-VQPRF----DGVPQRFDGPQHQQASRFDIPLGL 1111
PGP P GQPG DG PG + Q F D + F+GP P+GL
Sbjct: 1020 PPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG--------PIGL 1071
Query: 1112 QGTRFDNHPSQRLESVSFNQTGPYN--DPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNG 1169
QG P E GP PPG A G D PQGP
Sbjct: 1072 QGL-----PGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGA---------DGPQGP---- 1113
Query: 1170 PHGPGN 1175
P G GN
Sbjct: 1114 PGGVGN 1119
Score = 33.5 bits (75), Expect = 1.6
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 782 GPPTPASLRFDGSP-GQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP-IG 839
GP P L P G G GP GP+G+ G P GPPG V PL + P
Sbjct: 1370 GPGGPPGLPGPAGPKGAKGATGP---GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKT 1426
Query: 840 QAGGGGFRF----EGSPGLRFEGSPGGL 863
+ G R E P GSPGGL
Sbjct: 1427 RRSVDGSRLMQEDEAIPTGGAPGSPGGL 1454
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 101 bits (251), Expect = 6e-21
Identities = 133/376 (35%), Positives = 155/376 (41%), Gaps = 75/376 (19%)
Query: 753 DGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEG---- 808
DGP P R P +GPN P GPP P DG PG G G + F+G
Sbjct: 760 DGPHGPPGERGLPGP---QGPNGF-PGPKGPPGPPGK--DGLPGHPGQRGEVGFQGKTGP 813
Query: 809 --------PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-GSPGLRFEGS 859
PQG G P+ G PGP G P +G G AG G + + G PG +
Sbjct: 814 PGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGPPGAPGKDG 872
Query: 860 PGGLR-FEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLR 916
P GLR F G G P GG +G+ G P G GP G P G R G P+G
Sbjct: 873 PAGLRGFPGERGLPGTAGGPGLKGNEG-PSGP---PGPAGSP--GERGAAGSGGPIGPPG 926
Query: 917 FEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV--GMRFEGPHG-QSVAGLRFEG 971
G GP GAA G G PG G I GP + GV + GP G VAG +G
Sbjct: 927 RPGPQGPPGAA----GEKGVPGEKGPI---GPTGRDGVQGPVGLPGPAGPPGVAG--EDG 977
Query: 972 QHNQLG-----GNLRFEGPHGQPGVGIRFEGPL--VQQGGGMRFEGPSVPGGGLRIEGPL 1024
++G G +G HG PG GP+ V Q G +G PG GP
Sbjct: 978 DKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPGAAGADGE--PGA----RGPQ 1027
Query: 1025 GQGGPR-FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQ 1082
G G + EG F+G PG GL G PGP E+ G GP GPPG
Sbjct: 1028 GHFGAKGDEGTRG--FNGPPGP-------IGLQGLPGPSGEKGETGDVGPMGPPGPPG-- 1076
Query: 1083 VQPRFDGVPQRFDGPQ 1098
PR P DGPQ
Sbjct: 1077 --PRGPAGPNGADGPQ 1090
Score = 94.4 bits (233), Expect = 8e-19
Identities = 136/417 (32%), Positives = 161/417 (38%), Gaps = 93/417 (22%)
Query: 773 PNKLSPR-IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
P + PR + GP P + G PG G GP +GP+G LG P GPPG GTP
Sbjct: 496 PGESGPRGLLGPKGPPGI--PGPPGVRGMDGP---QGPKGSLG---PQGEPGPPGQQGTP 547
Query: 832 --LRFEGPIGQAGGGGFRF-EGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGG 888
GP G G G + +G PGL G PG +GP G P G G P G
Sbjct: 548 GTQGLPGPQGAIGPHGEKGPQGKPGL--PGMPGS---DGPPGHP-------GKEGPP-GT 594
Query: 889 LRFEGPHGQPVGGLRFDNPRG-QPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEG 945
+GP G P G L + PRG + V G+R GH G G PG G I +G
Sbjct: 595 KGNQGPSG-PQGPLGYPGPRGVKGVDGIRGLKGHKGE------KGEDGFPGFKGDIGVKG 647
Query: 946 PLLQQGV-GMRF----EGPHGQS-------VAGLRFEGQHNQLG-----GNLRFEGPHGQ 988
+ GV G R EGP G++ GL G+ +LG G +GP G
Sbjct: 648 DRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLM--GEKGKLGVPGLPGYPGRQGPKGS 705
Query: 989 PGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL 1048
G F G ++ G G S P G GP GQ GPR A G G
Sbjct: 706 LGFP-GFPGASGEK-GARGLSGKSGPRGERGPTGPRGQRGPR----GATGKSGAKGTSG- 758
Query: 1049 LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIP 1108
DG HG PG R PG GP F GP G P DG+P
Sbjct: 759 ---GDGPHGPPGER--GLPGPQGPNGFPGPKGPPGPPGKDGLP----------------- 796
Query: 1109 LGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
HP QR E +TGP PPG + G E+ P GP
Sbjct: 797 ---------GHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGERGHPGPPGP 843
Score = 91.3 bits (225), Expect = 7e-18
Identities = 114/341 (33%), Positives = 137/341 (40%), Gaps = 43/341 (12%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP--LRFEGPIGQ 840
P P DG PG G GP +G QG G PL + GP G G +G G+
Sbjct: 571 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 630
Query: 841 AGGGGFR-FEGSPGLRFE----GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPH 895
G GF F+G G++ + G PG +GP G P G G G P G + +G
Sbjct: 631 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-PKGRTGPTGDPGPP-GLMGEKGKL 688
Query: 896 GQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMR 955
G P GL R P G L F G G SG G G G GP ++G
Sbjct: 689 GVP--GLPGYPGRQGPKGSLGFPGFPGASGEK----GARGLSGKS----GPRGERGP--- 735
Query: 956 FEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG 1015
GP GQ G R + G +GPHG PG E L G F GP P
Sbjct: 736 -TGPRGQR--GPRGATGKSGAKGTSGGDGPHGPPG-----ERGLPGPQGPNGFPGPKGPP 787
Query: 1016 GGLRIEGPLGQGGPRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFERTPGQPGP 1072
G +G G G R E + F G+ PG P ++ G G+ GP ER G PGP
Sbjct: 788 GPPGKDGLPGHPGQRGE----VGFQGKTGPPGPPGVVGP-QGAAGETGPMGER--GHPGP 840
Query: 1073 QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
GPPG+Q P G P A D P GL+G
Sbjct: 841 P---GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRG 878
Score = 87.0 bits (214), Expect = 1e-16
Identities = 119/390 (30%), Positives = 149/390 (38%), Gaps = 79/390 (20%)
Query: 762 RDGPTKMI-FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLR 820
+DGP + F G L GP G+ G G GP G +G G G P+
Sbjct: 870 KDGPAGLRGFPGERGLPGTAGGPG------LKGNEGPSGPPGPAGSPGERGAAGSGGPIG 923
Query: 821 FEGPPGPVGTPLRF--------EGPIGQAGGGGFRF-------EGSPGLRFE-------G 858
G PGP G P +GPIG G G + G PG+ E G
Sbjct: 924 PPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 983
Query: 859 SPGGLRFEGPGGQ-----------PVGGLRFEGHRGQP--------------VGGLRFEG 893
PG +G G+ PVG G G+P G F G
Sbjct: 984 DPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1043
Query: 894 PHGQPVGGLRFDNPRGQ-----PVGGLRFEGGHGPSGAA--IRFDGPHGQPGGGIRFEGP 946
P G P+G P G+ VG + G GP G A DGP G P GG+ GP
Sbjct: 1044 PPG-PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP-GGVGNLGP 1101
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--G 1004
++G P Q G++ G + G +G GQPG GP +G G
Sbjct: 1102 PGEKGEPGESGSPGIQGEPGVK--GPRGERGE----KGESGQPGE----PGPPGPKGPTG 1151
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR 1062
+G P G GP G+GGPR +G R DG+PGQP P G +G PGP
Sbjct: 1152 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-SPGPTGENGPPGPL 1210
Query: 1063 FERTP-GQPGPQRFDGPPGQQVQPRFDGVP 1091
+R P G PG + G G + P G P
Sbjct: 1211 GKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1240
Score = 82.0 bits (201), Expect = 4e-15
Identities = 133/449 (29%), Positives = 164/449 (36%), Gaps = 116/449 (25%)
Query: 703 QRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVAR 762
QRSP L RP+ ++ P GL + A+ E L +GP P
Sbjct: 245 QRSPQQQPSRLHRPQNQEPQSQAAHGPR----GLKGEKGEPAVLEPGMLVEGPPGP---- 296
Query: 763 DGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFE 822
+GP +I GP P I G P P G PG+ G G G +
Sbjct: 297 EGPAGLI--GP----PGIQGNPGPV-----GDPGERGPPGRAGLPGS------------D 333
Query: 823 GPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEG--SPGGLRFEGPGGQPVGGLRFEG 880
G PGP GT L G GG + + + L GP G G
Sbjct: 334 GAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP-------MG 386
Query: 881 HRGQPVGGLRFEGPHGQPVG-GLRFDNPRGQPVGGLRFEGGHGPSGAAIR-----FDGPH 934
+ G+P GP GQP GL+ ++ P G +G GP G A R DG
Sbjct: 387 YTGRP-------GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 439
Query: 935 GQPG-----GGIRFEG-PLLQQGVGMR-------FEGPHGQSVAGLRFEGQHNQLG---- 977
G PG G F+G P L G R GP G+ G R G ++G
Sbjct: 440 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED--GER--GDDGEIGPRGL 495
Query: 978 ----GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEG 1033
G GP G PG+ GP +G +GP P G L GP G+ GP
Sbjct: 496 PGESGPRGLLGPKGPPGI----PGPPGVRG----MDGPQGPKGSL---GPQGEPGP---- 540
Query: 1034 CHALRFDGQPGQPSL--LPRFDGL---HGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFD 1088
GQ G P LP G HG+ GP + PG PG DGPPG P +
Sbjct: 541 ------PGQQGTPGTQGLPGPQGAIGPHGEKGP--QGKPGLPGMPGSDGPPG---HPGKE 589
Query: 1089 GVP--QRFDGPQHQQASRFDIPLGLQGTR 1115
G P + GP Q PLG G R
Sbjct: 590 GPPGTKGNQGPSGPQG-----PLGYPGPR 613
Score = 81.3 bits (199), Expect = 7e-15
Identities = 102/319 (31%), Positives = 123/319 (38%), Gaps = 89/319 (27%)
Query: 781 DGPP-TPASLRFDGSPGQMGGGGPLRFEGPQG---------QLGGGCPLRFEGPPGPVGT 830
DGP P + F G PG G GGP +G +G Q G P GPPGP+G
Sbjct: 1153 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1212
Query: 831 PLRFEGPIGQAGG----GGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPV 886
GP G G GG +G PG G+PG GP G P G +G RG P
Sbjct: 1213 ----RGPAGSPGSEGRQGGKGAKGDPGA--IGAPGKTGPVGPAG-PAGKPGPDGLRGLP- 1264
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
G + G G+P G P G PVG G G +GA G G PG
Sbjct: 1265 GSV---GQQGRP-GATGQAGPPG-PVGPPGLPGLRGDAGA----KGEKGHPG-------- 1307
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGM 1006
+G+ GP G+ +G+ G GP G PG Q G M
Sbjct: 1308 ----LIGL--IGPPGE-------QGEKGDRG----LPGPQGSPG-----------QKGEM 1339
Query: 1007 RFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERT 1066
G S GP+G GGP G PG P+ G G GP+ E+
Sbjct: 1340 GIPGAS---------GPIGPGGP----------PGLPG-PAGPKGAKGATGPGGPKGEK- 1378
Query: 1067 PGQPGPQRFDGPPGQQVQP 1085
G GP GPPG+ +QP
Sbjct: 1379 -GVQGPPGHPGPPGEVIQP 1396
Score = 78.6 bits (192), Expect = 4e-14
Identities = 147/486 (30%), Positives = 167/486 (34%), Gaps = 113/486 (23%)
Query: 759 SVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL----- 813
S DGP EGP + P P + G G G G +GP+G L
Sbjct: 657 SRGEDGP-----EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 711
Query: 814 -------------GGGCPLRFEGPPGPVGTPLRFEGPIGQAG-------GGGFRFEGSPG 853
G P GP GP G GP G G GG G PG
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQ----RGPRGATGKSGAKGTSGGDGPHGPPG 767
Query: 854 LR-FEGSPGGLRFEGPGGQ--PVGGLRFEGHRGQ-----------PVGGLRFEGPHGQ-- 897
R G G F GP G P G GH GQ P G GP G
Sbjct: 768 ERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAG 827
Query: 898 ---PVGGLRFDNPRGQP--------VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
P+G P G P G +G GP GA + DGP G G P
Sbjct: 828 ETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLP 886
Query: 947 LLQQGVGMR-FEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
G G++ EGP G AG E GG + GP G+PG +GP G
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPI---GPPGRPGP----QGPPGAAGE 939
Query: 1004 -GGMRFEGPSVPGGGLRIEGPLGQGGPRF-EGCHALRFD----GQPGQPSLLPRFDGLHG 1057
G +GP P G ++GP+G GP G D G PGQ G HG
Sbjct: 940 KGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGN-KGEHG 998
Query: 1058 QPGPRFERTP-GQPGPQRFDGPPGQQ-VQPRF----DGVPQRFDGPQHQQASRFDIPLGL 1111
PGP P GQPG DG PG + Q F D + F+GP P+GL
Sbjct: 999 PPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG--------PIGL 1050
Query: 1112 QGTRFDNHPSQRLESVSFNQTGPYN--DPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNG 1169
QG P E GP PPG A G D PQGP
Sbjct: 1051 QGL-----PGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGA---------DGPQGP---- 1092
Query: 1170 PHGPGN 1175
P G GN
Sbjct: 1093 PGGVGN 1098
Score = 33.5 bits (75), Expect = 1.6
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 782 GPPTPASLRFDGSP-GQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP-IG 839
GP P L P G G GP GP+G+ G P GPPG V PL + P
Sbjct: 1349 GPGGPPGLPGPAGPKGAKGATGP---GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKT 1405
Query: 840 QAGGGGFRF----EGSPGLRFEGSPGGL 863
+ G R E P GSPGGL
Sbjct: 1406 RRSVDGSRLMQEDEAIPTGGAPGSPGGL 1433
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 101 bits (251), Expect = 6e-21
Identities = 133/376 (35%), Positives = 155/376 (41%), Gaps = 75/376 (19%)
Query: 753 DGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEG---- 808
DGP P R P +GPN P GPP P DG PG G G + F+G
Sbjct: 867 DGPHGPPGERGLPGP---QGPNGF-PGPKGPPGPPGK--DGLPGHPGQRGEVGFQGKTGP 920
Query: 809 --------PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-GSPGLRFEGS 859
PQG G P+ G PGP G P +G G AG G + + G PG +
Sbjct: 921 PGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE-QGLPGTAGKEGTKGDPGPPGAPGKDG 979
Query: 860 PGGLR-FEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLR 916
P GLR F G G P GG +G+ G P G GP G P G R G P+G
Sbjct: 980 PAGLRGFPGERGLPGTAGGPGLKGNEG-PSGP---PGPAGSP--GERGAAGSGGPIGPPG 1033
Query: 917 FEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV--GMRFEGPHG-QSVAGLRFEG 971
G GP GAA G G PG G I GP + GV + GP G VAG +G
Sbjct: 1034 RPGPQGPPGAA----GEKGVPGEKGPI---GPTGRDGVQGPVGLPGPAGPPGVAG--EDG 1084
Query: 972 QHNQLG-----GNLRFEGPHGQPGVGIRFEGPL--VQQGGGMRFEGPSVPGGGLRIEGPL 1024
++G G +G HG PG GP+ V Q G +G PG GP
Sbjct: 1085 DKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPGAAGADGE--PGA----RGPQ 1134
Query: 1025 GQGGPR-FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQ 1082
G G + EG F+G PG GL G PGP E+ G GP GPPG
Sbjct: 1135 GHFGAKGDEGTRG--FNGPPGP-------IGLQGLPGPSGEKGETGDVGPMGPPGPPG-- 1183
Query: 1083 VQPRFDGVPQRFDGPQ 1098
PR P DGPQ
Sbjct: 1184 --PRGPAGPNGADGPQ 1197
Score = 94.4 bits (233), Expect = 8e-19
Identities = 136/417 (32%), Positives = 161/417 (38%), Gaps = 93/417 (22%)
Query: 773 PNKLSPR-IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
P + PR + GP P + G PG G GP +GP+G LG P GPPG GTP
Sbjct: 603 PGESGPRGLLGPKGPPGI--PGPPGVRGMDGP---QGPKGSLG---PQGEPGPPGQQGTP 654
Query: 832 --LRFEGPIGQAGGGGFRF-EGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGG 888
GP G G G + +G PGL G PG +GP G P G G P G
Sbjct: 655 GTQGLPGPQGAIGPHGEKGPQGKPGL--PGMPGS---DGPPGHP-------GKEGPP-GT 701
Query: 889 LRFEGPHGQPVGGLRFDNPRG-QPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEG 945
+GP G P G L + PRG + V G+R GH G G PG G I +G
Sbjct: 702 KGNQGPSG-PQGPLGYPGPRGVKGVDGIRGLKGHKGE------KGEDGFPGFKGDIGVKG 754
Query: 946 PLLQQGV-GMRF----EGPHGQS-------VAGLRFEGQHNQLG-----GNLRFEGPHGQ 988
+ GV G R EGP G++ GL G+ +LG G +GP G
Sbjct: 755 DRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLM--GEKGKLGVPGLPGYPGRQGPKGS 812
Query: 989 PGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL 1048
G F G ++ G G S P G GP GQ GPR A G G
Sbjct: 813 LGFP-GFPGASGEK-GARGLSGKSGPRGERGPTGPRGQRGPR----GATGKSGAKGTSG- 865
Query: 1049 LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIP 1108
DG HG PG R PG GP F GP G P DG+P
Sbjct: 866 ---GDGPHGPPGER--GLPGPQGPNGFPGPKGPPGPPGKDGLP----------------- 903
Query: 1109 LGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
HP QR E +TGP PPG + G E+ P GP
Sbjct: 904 ---------GHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGERGHPGPPGP 950
Score = 91.3 bits (225), Expect = 7e-18
Identities = 114/341 (33%), Positives = 137/341 (40%), Gaps = 43/341 (12%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP--LRFEGPIGQ 840
P P DG PG G GP +G QG G PL + GP G G +G G+
Sbjct: 678 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 737
Query: 841 AGGGGFR-FEGSPGLRFE----GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPH 895
G GF F+G G++ + G PG +GP G P G G G P G + +G
Sbjct: 738 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-PKGRTGPTGDPGPP-GLMGEKGKL 795
Query: 896 GQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMR 955
G P GL R P G L F G G SG G G G GP ++G
Sbjct: 796 GVP--GLPGYPGRQGPKGSLGFPGFPGASGEK----GARGLSGKS----GPRGERGP--- 842
Query: 956 FEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG 1015
GP GQ G R + G +GPHG PG E L G F GP P
Sbjct: 843 -TGPRGQR--GPRGATGKSGAKGTSGGDGPHGPPG-----ERGLPGPQGPNGFPGPKGPP 894
Query: 1016 GGLRIEGPLGQGGPRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFERTPGQPGP 1072
G +G G G R E + F G+ PG P ++ G G+ GP ER G PGP
Sbjct: 895 GPPGKDGLPGHPGQRGE----VGFQGKTGPPGPPGVVGP-QGAAGETGPMGER--GHPGP 947
Query: 1073 QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
GPPG+Q P G P A D P GL+G
Sbjct: 948 P---GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRG 985
Score = 87.0 bits (214), Expect = 1e-16
Identities = 119/390 (30%), Positives = 149/390 (38%), Gaps = 79/390 (20%)
Query: 762 RDGPTKMI-FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLR 820
+DGP + F G L GP G+ G G GP G +G G G P+
Sbjct: 977 KDGPAGLRGFPGERGLPGTAGGPG------LKGNEGPSGPPGPAGSPGERGAAGSGGPIG 1030
Query: 821 FEGPPGPVGTPLRF--------EGPIGQAGGGGFRF-------EGSPGLRFE-------G 858
G PGP G P +GPIG G G + G PG+ E G
Sbjct: 1031 PPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 1090
Query: 859 SPGGLRFEGPGGQ-----------PVGGLRFEGHRGQP--------------VGGLRFEG 893
PG +G G+ PVG G G+P G F G
Sbjct: 1091 DPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1150
Query: 894 PHGQPVGGLRFDNPRGQ-----PVGGLRFEGGHGPSGAA--IRFDGPHGQPGGGIRFEGP 946
P G P+G P G+ VG + G GP G A DGP G P GG+ GP
Sbjct: 1151 PPG-PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP-GGVGNLGP 1208
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--G 1004
++G P Q G++ G + G +G GQPG GP +G G
Sbjct: 1209 PGEKGEPGESGSPGIQGEPGVK--GPRGERGE----KGESGQPGE----PGPPGPKGPTG 1258
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR 1062
+G P G GP G+GGPR +G R DG+PGQP P G +G PGP
Sbjct: 1259 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-SPGPTGENGPPGPL 1317
Query: 1063 FERTP-GQPGPQRFDGPPGQQVQPRFDGVP 1091
+R P G PG + G G + P G P
Sbjct: 1318 GKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1347
Score = 81.3 bits (199), Expect = 7e-15
Identities = 102/319 (31%), Positives = 123/319 (38%), Gaps = 89/319 (27%)
Query: 781 DGPP-TPASLRFDGSPGQMGGGGPLRFEGPQG---------QLGGGCPLRFEGPPGPVGT 830
DGP P + F G PG G GGP +G +G Q G P GPPGP+G
Sbjct: 1260 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1319
Query: 831 PLRFEGPIGQAGG----GGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPV 886
GP G G GG +G PG G+PG GP G P G +G RG P
Sbjct: 1320 ----RGPAGSPGSEGRQGGKGAKGDPGA--IGAPGKTGPVGPAG-PAGKPGPDGLRGLP- 1371
Query: 887 GGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
G + G G+P G P G PVG G G +GA G G PG
Sbjct: 1372 GSV---GQQGRP-GATGQAGPPG-PVGPPGLPGLRGDAGA----KGEKGHPG-------- 1414
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGM 1006
+G+ GP G+ +G+ G GP G PG Q G M
Sbjct: 1415 ----LIGL--IGPPGE-------QGEKGDRG----LPGPQGSPG-----------QKGEM 1446
Query: 1007 RFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERT 1066
G S GP+G GGP G PG P+ G G GP+ E+
Sbjct: 1447 GIPGAS---------GPIGPGGP----------PGLPG-PAGPKGAKGATGPGGPKGEK- 1485
Query: 1067 PGQPGPQRFDGPPGQQVQP 1085
G GP GPPG+ +QP
Sbjct: 1486 -GVQGPPGHPGPPGEVIQP 1503
Score = 80.5 bits (197), Expect = 1e-14
Identities = 122/394 (30%), Positives = 148/394 (37%), Gaps = 97/394 (24%)
Query: 758 PSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGC 817
P+V G M+ EGP GP PA L G PG G GP+ G +G G
Sbjct: 388 PAVLEPG---MLVEGP-------PGPEGPAGLI--GPPGIQGNPGPVGDPGERGPPGRAG 435
Query: 818 PLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEG--SPGGLRFEGPGGQPVGG 875
+G PGP GT L G GG + + + L GP G
Sbjct: 436 LPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP---- 491
Query: 876 LRFEGHRGQPVGGLRFEGPHGQPVG-GLRFDNPRGQPVGGLRFEGGHGPSGAAIR----- 929
G+ G+P GP GQP GL+ ++ P G +G GP G A R
Sbjct: 492 ---MGYTGRP-------GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAG 541
Query: 930 FDGPHGQPG-----GGIRFEG-PLLQQGVGMR-------FEGPHGQSVAGLRFEGQHNQL 976
DG G PG G F+G P L G R GP G+ G R G ++
Sbjct: 542 ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED--GER--GDDGEI 597
Query: 977 G--------GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG 1028
G G GP G PG+ GP +G +GP P G L GP G+ G
Sbjct: 598 GPRGLPGESGPRGLLGPKGPPGI----PGPPGVRG----MDGPQGPKGSL---GPQGEPG 646
Query: 1029 PRFEGCHALRFDGQPGQPSL--LPRFDGL---HGQPGPRFERTPGQPGPQRFDGPPGQQV 1083
P GQ G P LP G HG+ GP + PG PG DGPPG
Sbjct: 647 P----------PGQQGTPGTQGLPGPQGAIGPHGEKGP--QGKPGLPGMPGSDGPPG--- 691
Query: 1084 QPRFDGVP--QRFDGPQHQQASRFDIPLGLQGTR 1115
P +G P + GP Q PLG G R
Sbjct: 692 HPGKEGPPGTKGNQGPSGPQG-----PLGYPGPR 720
Score = 71.2 bits (173), Expect = 7e-12
Identities = 121/415 (29%), Positives = 149/415 (35%), Gaps = 94/415 (22%)
Query: 786 PASLRFDGSPGQMGGGGPLRFEGPQGQLGG-GCPLRFEGPPGPV------GTPLRFEGPI 838
P + RF + G GG EGP G G R E GP + GP
Sbjct: 322 PTADRFQAE--EYGEGGTDPPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPR 379
Query: 839 GQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQP 898
G G G PG+ EG PG EGP G +G +G+ G PVG GP G+
Sbjct: 380 GLKGEKGEPAVLEPGMLVEGPPGP---EGPAGL-IGPPGIQGNPG-PVGDPGERGPPGR- 433
Query: 899 VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEG 958
G P +G GP G ++ G GG +GP+
Sbjct: 434 ---------AGLPGS----DGAPGPPGTSLMLPFRFGSGGGD---KGPV----------- 466
Query: 959 PHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGG-GMRFE----GPSV 1013
VA + Q L GP G G R GPL Q G G++ E GP
Sbjct: 467 -----VAAQEAQAQAILQQARLALRGPPGPMGYTGR-PGPLGQPGSPGLKGESGDLGPQG 520
Query: 1014 PGGGLRIEGPLGQGGPRFE-GCHALRFDGQPGQPSLL--PRFDGLHGQPGPRFERTPGQP 1070
P G + GP G+ G R G R G PG P + FDGL G PG + R G
Sbjct: 521 PRGPQGLTGPPGKAGRRGRAGADGAR--GMPGDPGVKGDRGFDGLPGLPGEKGHR--GDT 576
Query: 1071 GPQRFDGPPGQQVQPRFDGV-----------PQRFDGPQHQQASRFDIPLGLQGTRFDNH 1119
G Q GPPG+ + DG P+ GP+ P G++G
Sbjct: 577 GAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQG 634
Query: 1120 PSQRLESVSFNQTGPYND--PPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHG 1172
P L GP + PPG +QGL PQG GPHG
Sbjct: 635 PKGSL--------GPQGEPGPPGQQGTPGTQGL---------PGPQGA--IGPHG 670
Score = 33.5 bits (75), Expect = 1.6
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 782 GPPTPASLRFDGSP-GQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP-IG 839
GP P L P G G GP GP+G+ G P GPPG V PL + P
Sbjct: 1456 GPGGPPGLPGPAGPKGAKGATGP---GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKT 1512
Query: 840 QAGGGGFRF----EGSPGLRFEGSPGGL 863
+ G R E P GSPGGL
Sbjct: 1513 RRSVDGSRLMQEDEAIPTGGAPGSPGGL 1540
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 100 bits (250), Expect = 8e-21
Identities = 110/336 (32%), Positives = 132/336 (39%), Gaps = 79/336 (23%)
Query: 791 FDGSPGQMGGGGPLRFEGPQGQLGG-GCPLR--FEGPPGPVGTPLRFEGPIGQAGGGGFR 847
+ G PG G G + F G G G G P R G PGP GTP G IGQ G G
Sbjct: 475 YRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTP----GLIGQPGAKGEP 530
Query: 848 FEGSPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFD 905
E LR +G G F G G G +GH G P GP G P G +
Sbjct: 531 GEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPGLP-------GPKGSP-GSVGLK 582
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVA 965
RG P GG+ F G G +G P G PG G GP+ +G GP
Sbjct: 583 GERGPP-GGVGFPGSRGDTG-------PPGPPGYGPA--GPIGDKGQAGFPGGP------ 626
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
G+ GP G+PG + GP +G P PG GP G
Sbjct: 627 ------------GSPGLPGPKGEPGKIVPLPGPPGAEGL------PGSPG----FPGPQG 664
Query: 1026 QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFD------GPP 1079
G F G PG+P L P G GQPG F PG PGP+ D GPP
Sbjct: 665 DRG----------FPGTPGRPGL-PGEKGAVGQPGIGF---PGPPGPKGVDGLPGDMGPP 710
Query: 1080 GQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR 1115
G +P F+G+P G Q + + +GL G +
Sbjct: 711 GTPGRPGFNGLP----GNPGVQGQKGEPGVGLPGLK 742
Score = 96.3 bits (238), Expect = 2e-19
Identities = 133/424 (31%), Positives = 158/424 (37%), Gaps = 90/424 (21%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
SP + G +P S+ + GSPG G G G G G G PGP G P +G
Sbjct: 1095 SPGLKG--SPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTG-PAGQKG 1151
Query: 837 PIGQAGGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-----VGGLR 890
G G G E G PGL G PG +G G G + F G G P G
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSK-GEVGFPGLAGSPGIPGSKGEQG 1210
Query: 891 FEGPHGQPVGGLRFDNPRGQPVGGLRFEGGH---GPSGAAIRFDGPHGQPG-GGIRFEGP 946
F GP G P+GQP GL GH GP G GP GQPG G+ GP
Sbjct: 1211 FMGPPG----------PQGQP--GLPGSPGHATEGPKGDR----GPQGQPGLPGL--PGP 1252
Query: 947 LLQQGVGMRFEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGV----GIRFEGPLVQ 1001
+ GP G + G++ + + G GP G PG GI +
Sbjct: 1253 M----------GPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITG 1302
Query: 1002 QGGGM------RFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALRFDGQPGQPSLLPRFDG 1054
G M F+GP G I+G G QG P +G G PG P G
Sbjct: 1303 SKGDMGPPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAKG-----LPGPPGPPGPYDIIKG 1357
Query: 1055 LHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGT 1114
G PGP E PG G Q GP GQQ G+P P G+ G
Sbjct: 1358 EPGLPGP--EGPPGLKGLQGLPGPKGQQGVTGLVGIPG---------------PPGIPG- 1399
Query: 1115 RFDNHPSQRLESVSFNQTGP--YNDPPG-----NAFNAP-----SQGLQFQRHEQIFDSP 1162
FD P Q+ E TGP + PPG + P G RH Q D P
Sbjct: 1400 -FDGAPGQKGEMGPAGPTGPRGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTIDDP 1458
Query: 1163 QGPN 1166
Q P+
Sbjct: 1459 QCPS 1462
Score = 93.6 bits (231), Expect = 1e-18
Identities = 112/347 (32%), Positives = 141/347 (40%), Gaps = 53/347 (15%)
Query: 781 DGPPTPASLRFD----GSPGQMGGGGPLRFEGPQGQLG-GGCPLRFEGPPGPVGTP---- 831
+GP P + D G PG G GP G G G G P + +GPPGP G P
Sbjct: 69 EGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQ-DGPPGPPGIPGCNG 127
Query: 832 -LRFEGPIGQAGGGGFRFE-GSPGLR-FEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGG 888
GP+G G GF G PGL +G PG + PG G F G G P G
Sbjct: 128 TKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTP-GP 186
Query: 889 LRFEGPHGQPVGGLRFDNPRGQPVG----------GLRFEGGHGPSGAAIRFDGPHGQPG 938
G G PVG F P G P GL F+G G G GP G PG
Sbjct: 187 PGLPGLQG-PVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQ-GVSGPPGVPG 244
Query: 939 GG-IRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG--------------GNLRFE 983
++ +G +G + P Q + G+ +G+ + G G+ F
Sbjct: 245 QAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFP 304
Query: 984 GPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALRFDGQ 1042
G G PG+ I +GP ++G GP P G + GPLG+ G R + G R G+
Sbjct: 305 GEPGYPGL-IGRQGPQGEKGEA----GPPGPPGIVIGTGPLGEKGERGYPGTPGPR--GE 357
Query: 1043 PGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDG 1089
PG F GL GQPGP PGQ G F G G++ F G
Sbjct: 358 PGPKG----FPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPG 400
Score = 86.3 bits (212), Expect = 2e-16
Identities = 135/465 (29%), Positives = 162/465 (34%), Gaps = 98/465 (21%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP----LR 833
P I G P P L PG G GP F GP G GPPGP G L
Sbjct: 178 PGIPGTPGPPGL-----PGLQGPVGPPGFTGPPGP---------PGPPGPPGEKGQMGLS 223
Query: 834 FEGPIGQAGGGGFR------------------------------FEGSPGLRFEGSPGGL 863
F+GP G G G F+G PG+ +G PG
Sbjct: 224 FQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGK- 282
Query: 864 RFEGPGGQP--------VGGLRFEGHRGQPVGGLRFEGPHGQ--------PVGGLRFDNP 907
GP G+P G F G G P G + +GP G+ P G + P
Sbjct: 283 --PGPRGKPGKDGDKGEKGSPGFPGEPGYP-GLIGRQGPQGEKGEAGPPGPPGIVIGTGP 339
Query: 908 RGQPVGGLRFEGGHGPSG--AAIRFDGPHGQPG-GGIRFEGPLLQQGV-GMRFE-GPHGQ 962
G+ G + G GP G F G GQPG G+ G G G R E G G
Sbjct: 340 LGEK-GERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGF 398
Query: 963 SVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEG 1022
L + L G GP GQPG G + Q G +GP G G
Sbjct: 399 PGTSLPGPSGRDGLPGPPGSPGPPGQPGY---TNGIVECQPGPPGDQGPPGIPGQPGFIG 455
Query: 1023 PLGQGGPRFEGCHALRFDGQPGQPSLL--PRFDGLHGQPGPRFERTPGQPGPQRFDGPPG 1080
+G+ G + E C DG G P P G GQPG + +R G PG G PG
Sbjct: 456 EIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDR--GLPGRDGVAGVPG 513
Query: 1081 QQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFD-NHPSQRLESVSFNQTGPYNDP- 1138
Q P G P P F L L+G + D P Q + G P
Sbjct: 514 PQGTPGLIGQPGAKGEP-----GEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPG 568
Query: 1139 -PGNAFNAPSQGLQFQR---------HEQIFDSPQGPNFNGPHGP 1173
PG + S GL+ +R + P GP GP GP
Sbjct: 569 LPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPAGP 613
Score = 82.8 bits (203), Expect = 2e-15
Identities = 120/383 (31%), Positives = 144/383 (37%), Gaps = 72/383 (18%)
Query: 754 GPSRPSVARDGPTKMIFEGP--NKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
GP+ P+ + P G K P + G P F G+ G G G + F G G
Sbjct: 1142 GPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPG---FPGAKGDKGSKGEVGFPGLAG 1198
Query: 812 QLG---GGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRF-EGSPGGLRFEG 867
G F GPPGP G P G G G EG G R +G PG G
Sbjct: 1199 SPGIPGSKGEQGFMGPPGPQGQP-------GLPGSPGHATEGPKGDRGPQGQPGLPGLPG 1251
Query: 868 PGGQP----VGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGH 921
P G P + G++ G +G P G GP G P G + G G +G
Sbjct: 1252 PMGPPGLPGIDGVK--GDKGNPGWPGAPGVPGPKGDP--GFQGMPGIGGSPGITGSKGDM 1307
Query: 922 GPSGAAIRFDGPHGQPG-GGIRFEGPLLQQGV--GMRFEGPHGQSVAGLRFEGQHNQLGG 978
GP G F GP G PG GI+ G QGV GP G G ++ + G
Sbjct: 1308 GPPGVP-GFQGPKGLPGLQGIK--GDQGDQGVPGAKGLPGPPGP-------PGPYDIIKG 1357
Query: 979 NLRFEGPHGQPGV-GIR-FEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHA 1036
GP G PG+ G++ GP QQG G + I GP G G
Sbjct: 1358 EPGLPGPEGPPGLKGLQGLPGPKGQQG----------VTGLVGIPGPPGIPG-------- 1399
Query: 1037 LRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDG 1096
FDG PGQ + G G GPR PG PGP DG PG P V F
Sbjct: 1400 --FDGAPGQKGEM----GPAGPTGPR--GFPGPPGP---DGLPGSMGPPGTPSVDHGFLV 1448
Query: 1097 PQHQQASRFDIPLGLQGTRFDNH 1119
+H Q D P GT+ H
Sbjct: 1449 TRHSQT--IDDPQCPSGTKILYH 1469
Score = 80.5 bits (197), Expect = 1e-14
Identities = 115/384 (29%), Positives = 142/384 (36%), Gaps = 87/384 (22%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE--- 849
G PGQ G G F G +G++G G PGPVG P G G+ G GF
Sbjct: 861 GLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAP----GLPGEKGDHGFPGSSGP 916
Query: 850 -GSPGLRFE-------GSPGGLRF------------EGPGGQPVGGLRFEGHRGQP---- 885
G PGL+ + G PG + +G GQ +G + +G RG P
Sbjct: 917 RGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQ-IGPIGEKGSRGDPGTPG 975
Query: 886 -------VGGLRFEGPHGQP-----VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
G GP G P G P+G VGG+ G G G GP
Sbjct: 976 VPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGS-VGGMGLPGTPGEKGVP-GIPGP 1033
Query: 934 HGQPG-----GGIRFEGPLLQQGVGMR-FEGPHG-QSVAGLRFEGQHNQLG--GNLRFEG 984
G PG G +G G+G+ G G Q +AG F G + G G++ G
Sbjct: 1034 QGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAG--FPGSPGEKGEKGSIGIPG 1091
Query: 985 PHGQPG-------VGIRFEGPLVQQGGGMRFEG----PSVPG-----GGLRIEGPLGQGG 1028
G PG VG L + G G P V G G GP GQ G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 1029 -PRFEGCHALRFD-GQPGQPSL-LPRFDGLHGQPGPRFE----------RTPGQPGPQRF 1075
P +G + G+PG P P F G G G + E PG G Q F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGF 1211
Query: 1076 DGPPGQQVQPRFDGVP-QRFDGPQ 1098
GPPG Q QP G P +GP+
Sbjct: 1212 MGPPGPQGQPGLPGSPGHATEGPK 1235
Score = 79.3 bits (194), Expect = 3e-14
Identities = 127/418 (30%), Positives = 155/418 (37%), Gaps = 76/418 (18%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P G PG G G + G GQ G PGPVG P G G+ G
Sbjct: 860 PGLPGQQGAPGIPGFPGSKGEMGVMGTPGQ---------PGSPGPVGAP----GLPGEKG 906
Query: 843 GGGFRF----EGSPGLRFEGSPGGLRFEG-PG-------GQPVGGLRFEGHRGQ--PVGG 888
GF G PGL+ G G + G PG G G +G +GQ P+G
Sbjct: 907 DHGFPGSSGPRGDPGLK--GDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGE 964
Query: 889 LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLL 948
G G P G D GQP G GP G G G PG GP
Sbjct: 965 KGSRGDPGTP-GVPGKDGQAGQP-------GQPGPKGDP-GISGTPGAPG----LPGPKG 1011
Query: 949 QQGVGMRFEGPHGQ-SVAGLRFEGQHNQLGGNLRFEGPHGQ---PGVGI-RFEGPLVQQG 1003
G GM G G+ V G+ L G+ +G GQ PG+GI G QG
Sbjct: 1012 SVG-GMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQG 1070
Query: 1004 GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGC-HALRFDGQPGQPSL-----LPRFDGLHG 1057
P G I P G P +G ++ + G PG P LP DG+ G
Sbjct: 1071 IAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPG 1130
Query: 1058 QPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFD 1117
G PG PGP GP GQ+ +P DG+P G ++ GL G F
Sbjct: 1131 VKGE--AGLPGTPGP---TGPAGQKGEPGSDGIP----GSAGEKGEP-----GLPGRGFP 1176
Query: 1118 NHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGN 1175
P + + S + G PG A S G+ + EQ F P GP P PG+
Sbjct: 1177 GFPGAKGDKGSKGEVG----FPG---LAGSPGIPGSKGEQGFMGPPGPQ-GQPGLPGS 1226
Score = 70.5 bits (171), Expect = 1e-11
Identities = 137/484 (28%), Positives = 175/484 (36%), Gaps = 105/484 (21%)
Query: 749 RPLFDG-PSRPSV-ARDGPTKMIFEGPNKLSPRIDG-PPTPASLRFDGSPGQMGGGGPLR 805
RP F+G P P V + G + G L P + G P TP G PG G G +
Sbjct: 715 RPGFNGLPGNPGVQGQKGEPGVGLPGLKGL-PGLPGIPGTPGEKGSIGVPGVPGEHGAI- 772
Query: 806 FEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRF 865
GP G G G PGP G P G +G G G G PG R G PGG
Sbjct: 773 --GPPGLQG------IRGEPGPPGLP----GSVGSPGVPGI---GPPGAR--GPPGG--- 812
Query: 866 EGPGGQPVGGLRFEGHRGQP-VGGLRFEGPHG----QPVGGLRFDN-----PRGQPVGGL 915
+GP G G +G +G P GL GP G Q + G+ + P Q G+
Sbjct: 813 QGPPGLS-GPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGI 871
Query: 916 -RFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHN 974
F G G G G GQPG GP+ G+ +G HG F G
Sbjct: 872 PGFPGSKGEMGVM----GTPGQPGS----PGPVGAPGLPGE-KGDHG-------FPGSSG 915
Query: 975 QLG-----GNLRFEGPHGQPGVGIRFE-GPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG 1028
G G+ G G+PG + + G + Q G +G P G G G G
Sbjct: 916 PRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPG 975
Query: 1029 PRFEGCHALRFDGQPGQPSLLPRFD-------GLHGQPGPRFE----RTPGQPGPQRFDG 1077
+ A GQPGQP P+ D G G PGP+ PG PG + G
Sbjct: 976 VPGKDGQA----GQPGQPG--PKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG 1029
Query: 1078 PPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR----------FDNHPSQRLESV 1127
PG Q P G G + ++ +G+ G R F P ++ E
Sbjct: 1030 IPGPQGSPGLPG----DKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKG 1085
Query: 1128 SFNQTGPYNDP-----PGNAFNAPSQGLQFQRHEQIFDSPQG----------PNFNGPHG 1172
S G P PG+ S GL ++ ++ G P GP G
Sbjct: 1086 SIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTG 1145
Query: 1173 PGNQ 1176
P Q
Sbjct: 1146 PAGQ 1149
Score = 40.8 bits (94), Expect = 0.010
Identities = 67/228 (29%), Positives = 74/228 (32%), Gaps = 66/228 (28%)
Query: 908 RGQP--VGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVA 965
RG P G + F G GP +GP G PG P L G R GP G S
Sbjct: 51 RGLPGLQGVIGFPGMQGP-------EGPQGPPGQKGDTGEPGLPGTKGTR--GPPGAS-- 99
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG--GGLRIEGP 1023
GN G GQ G GP P +PG G GP
Sbjct: 100 ---------GYPGNPGLPGIPGQDGP----PGP------------PGIPGCNGTKGERGP 134
Query: 1024 LGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGP--------------RFERTPGQ 1069
LG P G F G PG P L G+ G PG F PG
Sbjct: 135 LGP--PGLPG-----FAGNPGPPGL----PGMKGDPGEILGHVPGMLLKGERGFPGIPGT 183
Query: 1070 PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFD 1117
PGP G G P F G P GP + + L QG + D
Sbjct: 184 PGPPGLPGLQGPVGPPGFTGPPGP-PGPPGPPGEKGQMGLSFQGPKGD 230
Score = 33.1 bits (74), Expect = 2.1
Identities = 48/169 (28%), Positives = 63/169 (37%), Gaps = 26/169 (15%)
Query: 1034 CHALRFD-GQPGQPSL-----LPRFDGLHGQPGPRFER----TPGQPGPQRFDGPPGQQV 1083
CH ++ G+ G P L P G G GP ++ PG PG + GPPG
Sbjct: 41 CHGVKGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASG 100
Query: 1084 QPRFDGVP--QRFDGPQHQQASRFDIPLGLQGTRFDNHP--SQRLESVSFNQ-----TGP 1134
P G+P DGP IP G GT+ + P L + N G
Sbjct: 101 YPGNPGLPGIPGQDGPPGPPG----IP-GCNGTKGERGPLGPPGLPGFAGNPGPPGLPGM 155
Query: 1135 YNDPPGNAFNAPSQGLQFQR-HEQIFDSPQGPNFNGPHGP-GNQSFSNP 1181
DP + P L+ +R I +P P G GP G F+ P
Sbjct: 156 KGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGP 204
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 100 bits (250), Expect = 8e-21
Identities = 125/371 (33%), Positives = 155/371 (41%), Gaps = 64/371 (17%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P + GPP P L G PG G F GPQG LG GP GP+G P +GP
Sbjct: 257 PGMHGPPGPVGLPGVGKPGVTG------FPGPQGPLGKPGAPGEPGPQGPIGVP-GVQGP 309
Query: 838 IGQAGGGGFRFEGSPGLRFEGSPGGLRFEG-------PGGQPVGGLRFEGHRG-QPVGGL 889
G G G +G PG G PGG +G PG +G F G +G + +GG+
Sbjct: 310 PGIPGIGKPGQDGIPGQ--PGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGV 367
Query: 890 RFE-GPHGQ--PVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
GP G+ P+G P G+P G G GP G AI F GP G+ GG + +GP
Sbjct: 368 PGALGPRGEKGPIGAPGIGGPPGEP-GLPGIPGPMGPPG-AIGFPGPKGE-GGIVGPQGP 424
Query: 947 LLQQG-VGMR-FEGPHG----QSVAGLRF-------EGQHNQLG-----GNLRFEGPHGQ 988
+G G++ F G G G+R +G+ Q G G GP G+
Sbjct: 425 PGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGE 484
Query: 989 PGV--GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQP 1046
PG+ +GP G G GPS P G I GP G+ G G PG P
Sbjct: 485 PGIPGDQGLQGPPGIPGIG----GPSGPIGPPGIPGPKGEPG----------LPGPPGFP 530
Query: 1047 SL-LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRF-DGPQHQQASR 1104
+ P GLHG PG PG GPQ G PG P G P P Q
Sbjct: 531 GIGKPGVAGLHGPPG-----KPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYL 585
Query: 1105 FDIPLGLQGTR 1115
D+ LG+ G +
Sbjct: 586 PDMGLGIDGVK 596
Score = 86.3 bits (212), Expect = 2e-16
Identities = 135/405 (33%), Positives = 158/405 (39%), Gaps = 95/405 (23%)
Query: 787 ASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGF 846
ASLR G G G GP GP G G G P +G PGP G P +G+ G G
Sbjct: 114 ASLR--GEQGPRGEPGPRGPPGPPGLPGHGIP-GIKGKPGPQGYP-----GVGKPGMPG- 164
Query: 847 RFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDN 906
G PG G PG G G+ +G + G +G P GPHG P G+
Sbjct: 165 -MPGKPGAM--GMPGAKGEIGQKGE-IGPMGIPGPQGPP-------GPHGLP--GI---- 207
Query: 907 PRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPLLQQGVGMRFEGPHGQSVA 965
G+P GG G GP G GP G PG G+R GP +G GM P V
Sbjct: 208 --GKP-GGPGLPGQPGPKGDR----GPKGLPGPQGLR--GPKGDKGFGM----PGAPGVK 254
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVG----IRFEGPLVQQGGGMRFEGPSVPGGGLRIE 1021
G G H GP G PGVG F GP QG + P PG +
Sbjct: 255 GP--PGMHGP-------PGPVGLPGVGKPGVTGFPGP---QGPLGKPGAPGEPGP----Q 298
Query: 1022 GPLG----QGGPRFEGCHALRFDGQPGQPSLL--PRFDGLHGQPGPRFERTPGQPGPQRF 1075
GP+G QG P G DG PGQP GL G PGP PG PG +
Sbjct: 299 GPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGP-----PGLPGIGK- 352
Query: 1076 DGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQ-RLESVSFNQTGP 1134
G PG + GVP GP+ ++ P+G G P + L + GP
Sbjct: 353 PGFPGPKGDRGMGGVPGAL-GPRGEKG-----PIGAPG--IGGPPGEPGLPGI----PGP 400
Query: 1135 YNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHG-PGNQSF 1178
P F P + E PQGP GP G PG Q F
Sbjct: 401 MGPPGAIGFPGP-------KGEGGIVGPQGP--PGPKGEPGLQGF 436
Score = 85.9 bits (211), Expect = 3e-16
Identities = 123/390 (31%), Positives = 146/390 (37%), Gaps = 91/390 (23%)
Query: 778 PRIDGPPTPASLR------FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT- 830
P I G P P G PG+ G G +G GQ G P+ GP GP G
Sbjct: 143 PGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPH 202
Query: 831 ------------------------PLRFEGP---IGQAGGGGFRFEGSPGLRFE------ 857
P GP G G GF G+PG++
Sbjct: 203 GLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGP 262
Query: 858 ---------GSPGGLRFEGPGGQPVGGLRFEGHRGQ--PVGGLRFEGPHGQP-VGGLRFD 905
G PG F GP G P+G G G P+G +GP G P +G D
Sbjct: 263 PGPVGLPGVGKPGVTGFPGPQG-PLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQD 321
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPLLQQGVGMRFEGPHGQSV 964
GQP F GG G G GP G PG G F GP +G+G G G
Sbjct: 322 GIPGQP----GFPGGKGEQGLP-GLPGPPGLPGIGKPGFPGPKGDRGMG----GVPG--- 369
Query: 965 AGLRFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGP 1023
L G+ +G GP G+PG+ GI GP+ G + F GP GG I GP
Sbjct: 370 -ALGPRGEKGPIGAP-GIGGPPGEPGLPGI--PGPM-GPPGAIGFPGPKGEGG---IVGP 421
Query: 1024 LGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQV 1083
G GP+ E G PG+P L G G PG R G PGP G GQ+
Sbjct: 422 QGPPGPKGEP----GLQGFPGKPGFL----GEVGPPGMR-----GLPGPIGPKGEAGQKG 468
Query: 1084 QPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
P GVP GP+ + D GLQG
Sbjct: 469 VPGLPGVPGLL-GPKGEPGIPGD--QGLQG 495
Score = 65.1 bits (157), Expect = 5e-10
Identities = 75/239 (31%), Positives = 95/239 (39%), Gaps = 51/239 (21%)
Query: 885 PVGGLRFE-GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRF 943
P+ LR E GP G+P PRG P G GHG G + GP G PG G
Sbjct: 112 PLASLRGEQGPRGEP-------GPRGPP--GPPGLPGHGIPGIKGK-PGPQGYPGVG--- 158
Query: 944 EGPLLQQGVGMRFEGPHGQSVAGLRFE-GQHNQLG-----GNLRFEGPHGQPGVGIRFEG 997
+ G+ P + G + E GQ ++G G GPHG PG+G
Sbjct: 159 -----KPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIG----- 208
Query: 998 PLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALRFDGQPGQPSLLPRFDGLH 1056
+ GG G P G GP G GP+ G + G PG P + G+H
Sbjct: 209 ----KPGGPGLPGQPGPKGD---RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGP-PGMH 260
Query: 1057 GQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR 1115
G PGP G+PG F GP G +P G P GPQ P+G+ G +
Sbjct: 261 GPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEP----GPQG--------PIGVPGVQ 307
Score = 48.1 bits (113), Expect = 6e-05
Identities = 52/157 (33%), Positives = 61/157 (38%), Gaps = 20/157 (12%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P L G PG G G +GP G G G P GPPG GP G+ G
Sbjct: 473 PGVPGLLGPKGEPGIPGDQG---LQGPPGIPGIGGPSGPIGPPG-------IPGPKGEPG 522
Query: 843 GGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGL 902
G PG G PG GP G+P G L +G G P G GP G P
Sbjct: 523 -----LPGPPGFPGIGKPGVAGLHGPPGKP-GALGPQGQPGLP-GPPGPPGPPGPPAVMP 575
Query: 903 RFDNPRGQ--PVGGLRFEGGHGPSGAAIRFDGPHGQP 937
P+G+ P GL +G P + G +G P
Sbjct: 576 PTPPPQGEYLPDMGLGIDGVKPPHAYGAK-KGKNGGP 611
Score = 35.8 bits (81), Expect = 0.33
Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P GPS P GP + GP K P + GPP + G G G G GP
Sbjct: 500 PGIGGPSGPI----GPPGI--PGP-KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGP 552
Query: 810 QGQLGGGCPLRFEGPPGPVGTP 831
QGQ G P GPPGP G P
Sbjct: 553 QGQPGLPGP---PGPPGPPGPP 571
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 100 bits (250), Expect = 8e-21
Identities = 125/371 (33%), Positives = 155/371 (41%), Gaps = 64/371 (17%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P + GPP P L G PG G F GPQG LG GP GP+G P +GP
Sbjct: 257 PGMHGPPGPVGLPGVGKPGVTG------FPGPQGPLGKPGAPGEPGPQGPIGVP-GVQGP 309
Query: 838 IGQAGGGGFRFEGSPGLRFEGSPGGLRFEG-------PGGQPVGGLRFEGHRG-QPVGGL 889
G G G +G PG G PGG +G PG +G F G +G + +GG+
Sbjct: 310 PGIPGIGKPGQDGIPGQ--PGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGV 367
Query: 890 RFE-GPHGQ--PVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP 946
GP G+ P+G P G+P G G GP G AI F GP G+ GG + +GP
Sbjct: 368 PGALGPRGEKGPIGAPGIGGPPGEP-GLPGIPGPMGPPG-AIGFPGPKGE-GGIVGPQGP 424
Query: 947 LLQQG-VGMR-FEGPHG----QSVAGLRF-------EGQHNQLG-----GNLRFEGPHGQ 988
+G G++ F G G G+R +G+ Q G G GP G+
Sbjct: 425 PGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGE 484
Query: 989 PGV--GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQP 1046
PG+ +GP G G GPS P G I GP G+ G G PG P
Sbjct: 485 PGIPGDQGLQGPPGIPGIG----GPSGPIGPPGIPGPKGEPG----------LPGPPGFP 530
Query: 1047 SL-LPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRF-DGPQHQQASR 1104
+ P GLHG PG PG GPQ G PG P G P P Q
Sbjct: 531 GIGKPGVAGLHGPPG-----KPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYL 585
Query: 1105 FDIPLGLQGTR 1115
D+ LG+ G +
Sbjct: 586 PDMGLGIDGVK 596
Score = 86.3 bits (212), Expect = 2e-16
Identities = 135/405 (33%), Positives = 158/405 (39%), Gaps = 95/405 (23%)
Query: 787 ASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGF 846
ASLR G G G GP GP G G G P +G PGP G P +G+ G G
Sbjct: 114 ASLR--GEQGPRGEPGPRGPPGPPGLPGHGIP-GIKGKPGPQGYP-----GVGKPGMPG- 164
Query: 847 RFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDN 906
G PG G PG G G+ +G + G +G P GPHG P G+
Sbjct: 165 -MPGKPGAM--GMPGAKGEIGQKGE-IGPMGIPGPQGPP-------GPHGLP--GI---- 207
Query: 907 PRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPLLQQGVGMRFEGPHGQSVA 965
G+P GG G GP G GP G PG G+R GP +G GM P V
Sbjct: 208 --GKP-GGPGLPGQPGPKGDR----GPKGLPGPQGLR--GPKGDKGFGM----PGAPGVK 254
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVG----IRFEGPLVQQGGGMRFEGPSVPGGGLRIE 1021
G G H GP G PGVG F GP QG + P PG +
Sbjct: 255 GP--PGMHGP-------PGPVGLPGVGKPGVTGFPGP---QGPLGKPGAPGEPGP----Q 298
Query: 1022 GPLG----QGGPRFEGCHALRFDGQPGQPSLL--PRFDGLHGQPGPRFERTPGQPGPQRF 1075
GP+G QG P G DG PGQP GL G PGP PG PG +
Sbjct: 299 GPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGP-----PGLPGIGK- 352
Query: 1076 DGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQ-RLESVSFNQTGP 1134
G PG + GVP GP+ ++ P+G G P + L + GP
Sbjct: 353 PGFPGPKGDRGMGGVPGAL-GPRGEKG-----PIGAPG--IGGPPGEPGLPGI----PGP 400
Query: 1135 YNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHG-PGNQSF 1178
P F P + E PQGP GP G PG Q F
Sbjct: 401 MGPPGAIGFPGP-------KGEGGIVGPQGP--PGPKGEPGLQGF 436
Score = 85.9 bits (211), Expect = 3e-16
Identities = 123/390 (31%), Positives = 146/390 (37%), Gaps = 91/390 (23%)
Query: 778 PRIDGPPTPASLR------FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT- 830
P I G P P G PG+ G G +G GQ G P+ GP GP G
Sbjct: 143 PGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPH 202
Query: 831 ------------------------PLRFEGP---IGQAGGGGFRFEGSPGLRFE------ 857
P GP G G GF G+PG++
Sbjct: 203 GLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGP 262
Query: 858 ---------GSPGGLRFEGPGGQPVGGLRFEGHRGQ--PVGGLRFEGPHGQP-VGGLRFD 905
G PG F GP G P+G G G P+G +GP G P +G D
Sbjct: 263 PGPVGLPGVGKPGVTGFPGPQG-PLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQD 321
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPLLQQGVGMRFEGPHGQSV 964
GQP F GG G G GP G PG G F GP +G+G G G
Sbjct: 322 GIPGQP----GFPGGKGEQGLP-GLPGPPGLPGIGKPGFPGPKGDRGMG----GVPG--- 369
Query: 965 AGLRFEGQHNQLGGNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGP 1023
L G+ +G GP G+PG+ GI GP+ G + F GP GG I GP
Sbjct: 370 -ALGPRGEKGPIGAP-GIGGPPGEPGLPGI--PGPM-GPPGAIGFPGPKGEGG---IVGP 421
Query: 1024 LGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQV 1083
G GP+ E G PG+P L G G PG R G PGP G GQ+
Sbjct: 422 QGPPGPKGEP----GLQGFPGKPGFL----GEVGPPGMR-----GLPGPIGPKGEAGQKG 468
Query: 1084 QPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
P GVP GP+ + D GLQG
Sbjct: 469 VPGLPGVPGLL-GPKGEPGIPGD--QGLQG 495
Score = 65.1 bits (157), Expect = 5e-10
Identities = 75/239 (31%), Positives = 95/239 (39%), Gaps = 51/239 (21%)
Query: 885 PVGGLRFE-GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRF 943
P+ LR E GP G+P PRG P G GHG G + GP G PG G
Sbjct: 112 PLASLRGEQGPRGEP-------GPRGPP--GPPGLPGHGIPGIKGK-PGPQGYPGVG--- 158
Query: 944 EGPLLQQGVGMRFEGPHGQSVAGLRFE-GQHNQLG-----GNLRFEGPHGQPGVGIRFEG 997
+ G+ P + G + E GQ ++G G GPHG PG+G
Sbjct: 159 -----KPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIG----- 208
Query: 998 PLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALRFDGQPGQPSLLPRFDGLH 1056
+ GG G P G GP G GP+ G + G PG P + G+H
Sbjct: 209 ----KPGGPGLPGQPGPKGD---RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGP-PGMH 260
Query: 1057 GQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR 1115
G PGP G+PG F GP G +P G P GPQ P+G+ G +
Sbjct: 261 GPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEP----GPQG--------PIGVPGVQ 307
Score = 48.1 bits (113), Expect = 6e-05
Identities = 52/157 (33%), Positives = 61/157 (38%), Gaps = 20/157 (12%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P L G PG G G +GP G G G P GPPG GP G+ G
Sbjct: 473 PGVPGLLGPKGEPGIPGDQG---LQGPPGIPGIGGPSGPIGPPG-------IPGPKGEPG 522
Query: 843 GGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGL 902
G PG G PG GP G+P G L +G G P G GP G P
Sbjct: 523 -----LPGPPGFPGIGKPGVAGLHGPPGKP-GALGPQGQPGLP-GPPGPPGPPGPPAVMP 575
Query: 903 RFDNPRGQ--PVGGLRFEGGHGPSGAAIRFDGPHGQP 937
P+G+ P GL +G P + G +G P
Sbjct: 576 PTPPPQGEYLPDMGLGIDGVKPPHAYGAK-KGKNGGP 611
Score = 35.8 bits (81), Expect = 0.33
Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P GPS P GP + GP K P + GPP + G G G G GP
Sbjct: 500 PGIGGPSGPI----GPPGI--PGP-KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGP 552
Query: 810 QGQLGGGCPLRFEGPPGPVGTP 831
QGQ G P GPPGP G P
Sbjct: 553 QGQPGLPGP---PGPPGPPGPP 571
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 100 bits (248), Expect = 1e-20
Identities = 135/431 (31%), Positives = 159/431 (36%), Gaps = 92/431 (21%)
Query: 764 GPTKMIFE-GPNKL-SPRIDGPPT--PASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPL 819
GPT E GP L PR PT P DG+PG G GP GP GQ G
Sbjct: 590 GPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQ 649
Query: 820 RFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFE 879
GP G +GTP G+ G G+PG+ G PG +GP G P
Sbjct: 650 GLPGPQGLIGTP-------GEKGP-----PGNPGI--PGLPGS---DGPLGHP------- 685
Query: 880 GHRGQPVGGLRFEGPHGQPVGGLRFDNPRG----------QPVGGLRFEGGHGPSGAAIR 929
GH G P G +GP G G + PRG Q G + E G +
Sbjct: 686 GHEG-PTGEKGAQGPPGS-AGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVG 743
Query: 930 FDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQP 989
G G+PG GP + G EGP GQ+ G EGP G
Sbjct: 744 LKGDQGKPGA----PGPRGEDGP----EGPKGQA--------------GQAGEEGPPGSA 781
Query: 990 GVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLL 1049
G + P G + G P G + GPLG G + + G+ GQP L
Sbjct: 782 GEKGKLGVP-----GLPGYPGRPGPKGSIGFPGPLGPIGEKGK-------SGKTGQPGL- 828
Query: 1050 PRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPL 1109
+G G PG R ER GQPG GP G Q G+P P Q F P
Sbjct: 829 ---EGERGPPGSRGER--GQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPK 883
Query: 1110 GLQGTRFDN----HPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
G G + + HP QR E QTG PPG A QG + P GP
Sbjct: 884 GPPGHQGKDGRPGHPGQRGELGFQGQTG----PPGPAGVLGPQGKTGEVGPLGERGPPGP 939
Query: 1166 NFNGPHGPGNQ 1176
P PG Q
Sbjct: 940 ----PGPPGEQ 946
Score = 91.3 bits (225), Expect = 7e-18
Identities = 120/386 (31%), Positives = 145/386 (37%), Gaps = 101/386 (26%)
Query: 781 DGPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP-------- 831
DG P R + G GQ G GP GPQG+ G PL GPPGP G P
Sbjct: 892 DGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGL 951
Query: 832 ---------LRFEGPIGQAGGGGFR-FEGSPGLRFEGSPGGLRFE-GPGGQPVGGLRFEG 880
L GP+G+ G G R F G G + P GL+ + GP G PVG G
Sbjct: 952 EGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPG-PVGANGSPG 1010
Query: 881 HRGQ--PVGGLRFEGPHGQ--PVGGLRFDNPRGQ--------------PVGGLRFEGGHG 922
RG P GG+ G G PVG RG+ P+G L G G
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAG 1070
Query: 923 PSG-------------AAIRFD----GPHGQPG--GGIRFEGPLLQQGVGMRFEGPHG-- 961
PSG + D GP GQPG G GP G R GP G
Sbjct: 1071 PSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGR-RGPPGLF 1129
Query: 962 --QSVAGLR-------------FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGG 1004
+ G+R G + G G++ GPHG P GP QG
Sbjct: 1130 GQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAP-------GPRGPQGP 1182
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFE 1064
P +P GG+ G +G+ G R + G PG P G G PGP+ +
Sbjct: 1183 TGSEGTPGLP-GGVGQPGAVGEKGERGDA-------GDPGPP-------GAPGIPGPKGD 1227
Query: 1065 -RTPGQPGPQRFDGPPGQQVQPRFDG 1089
G GP GPPG++ P DG
Sbjct: 1228 IGEKGDSGPSGAAGPPGKKGPPGEDG 1253
Score = 85.5 bits (210), Expect = 4e-16
Identities = 128/380 (33%), Positives = 154/380 (40%), Gaps = 89/380 (23%)
Query: 754 GPSRPSVARDGPTKMI-FEGPNKLSPRIDGPP-------TPASLRFDGSPGQMGGGGPLR 805
GP P + ++GP + F GP K P GP P + +GSPG+ G GP
Sbjct: 962 GPPGP-LGKEGPAGLRGFPGP-KGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAG 1019
Query: 806 FEGPQGQLGGGCPL--------RFE-GPPGPVGT-----PLRFEGPIGQAGGGGFRFE-- 849
G GQ G P+ R E GPPGP G PL GP G AG G +
Sbjct: 1020 GIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKG 1079
Query: 850 --GSPGLRFEGSPGGLRFEGPGGQPVGGLRFE-GHRGQPVGGLRFEGPHGQP--VGGLRF 904
G+PG +GS G GP GQP G+R GH G P G +G G P G
Sbjct: 1080 DVGAPG--HKGSKGDKGDAGPPGQP--GIRGPAGHPGPP-GADGAQGRRGPPGLFGQKGD 1134
Query: 905 DNPRG--QPVGGLRFEGGHGPSGAA-----IRFDGPHGQPG-----GGIRFEG-PLLQQG 951
D RG +G +G GP G + GPHG PG G EG P L G
Sbjct: 1135 DGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGG 1194
Query: 952 VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP 1011
VG G G+ +G+ G GP G PG+ GP G + +G
Sbjct: 1195 VGQ--PGAVGE-------KGERGDAGD----PGPPGAPGI----PGPK----GDIGEKGD 1233
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
S P G GP G+ GP E DG G S+ P GL G GP PG PG
Sbjct: 1234 SGPSGAA---GPPGKKGPPGE-------DGAKG--SVGPT--GLPGDLGP-----PGDPG 1274
Query: 1072 PQRFDGPPGQQVQPRFDGVP 1091
DG PG++ P G P
Sbjct: 1275 VSGIDGSPGEKGDPGDVGGP 1294
Score = 84.7 bits (208), Expect = 6e-16
Identities = 147/468 (31%), Positives = 178/468 (38%), Gaps = 85/468 (18%)
Query: 754 GPSRPSVARDGPTKMIFEGP-----NKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEG 808
GP P+ P + EGP K S GPP P DG PG +G GP G
Sbjct: 1013 GPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGK--DGIPGPLGPLGPPGAAG 1070
Query: 809 PQGQLGG----GCPLRF--------EGPPGPVGT--PLRFEGPIGQAGGGGFRFEGSPGL 854
P G+ G G P GPPG G P GP G G G R G PGL
Sbjct: 1071 PSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRR--GPPGL 1128
Query: 855 RFEGSPGGLR-FEGPGGQPVGGLRF----EGHRGQPVGGLRFEGPHGQPVGGLRFDNPRG 909
+ G+R F G G P GL+ G +G+ VG + GPHG P G P G
Sbjct: 1129 FGQKGDDGVRGFVGVIGPP--GLQGLPGPPGEKGE-VGDVGSMGPHGAP-GPRGPQGPTG 1184
Query: 910 QPVGGLRFEGGHGPSGAA----IRFD----GPHGQPG-----GGIRFEGPLLQQGVG--M 954
G GG G GA R D GP G PG G I +G G
Sbjct: 1185 SE-GTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPP 1243
Query: 955 RFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVP 1014
+GP G+ G + L G+L GP G PGV +G ++G GP P
Sbjct: 1244 GKKGPPGED--GAKGSVGPTGLPGDL---GPPGDPGVS-GIDGSPGEKGDPGDVGGPGPP 1297
Query: 1015 G--GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGP 1072
G G GP G+ GP H R +G+ G+ G G+PGP + PG+ GP
Sbjct: 1298 GASGEPGAPGPPGKRGP---SGHMGR-EGREGEK-------GAKGEPGP--DGPPGRTGP 1344
Query: 1073 QRFDGPPGQQVQPRFDGVPQRFD-----GPQHQQASRFDI-PLGLQGTRFDNHPSQRLES 1126
GPPG+ G+P G Q + P GL G + D P + E
Sbjct: 1345 MGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGP--KGEK 1402
Query: 1127 VSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFN-GPHGP 1173
G PPG A QGL P GP + GP GP
Sbjct: 1403 GHIGLIGLIG-PPGEAGEKGDQGLPG------VQGPPGPKGDPGPPGP 1443
Score = 80.9 bits (198), Expect = 9e-15
Identities = 104/308 (33%), Positives = 127/308 (41%), Gaps = 55/308 (17%)
Query: 805 RFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGG-- 862
+FEGP G G + GPPGP G P GP G AG G G G+R G PG
Sbjct: 389 QFEGPPGAPGPQGVVGPSGPPGPPGFP-GDPGPPGPAGLPG--IPGIDGIR--GPPGTVI 443
Query: 863 -LRFEGPGGQPVG-GLRFEGHRGQPV---GGLRFEGPHGQPVGGLRFDNPRGQP--VGGL 915
+ F+ GG G + F+ + Q V L +GP G PVG P G P G
Sbjct: 444 MMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPG-PVGLTGRPGPVGLPGHPGLK 502
Query: 916 RFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFE-GPHG-QSVAGL-RFEGQ 972
EG GP G GPHG PG + P G+ + GP G + GL G+
Sbjct: 503 GEEGAEGPQGPR-GLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGE 561
Query: 973 HNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR 1030
Q G G++ GP G+ G ++G EGP P G GP G GPR
Sbjct: 562 KGQRGDFGHVGQPGPPGEDG----------ERGA----EGPPGPTGQAGEPGPRGLLGPR 607
Query: 1031 FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV 1090
G PG P+ P G+ G PG + G GP GPPGQQ G+
Sbjct: 608 ----------GSPG-PTGRPGVTGIDGAPGAK-----GNVGPPGEPGPPGQQGNHGSQGL 651
Query: 1091 PQRFDGPQ 1098
P GPQ
Sbjct: 652 P----GPQ 655
Score = 73.6 bits (179), Expect = 1e-12
Identities = 112/360 (31%), Positives = 142/360 (39%), Gaps = 63/360 (17%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GPP L G PG+ G G + GP G G P +GP G GTP G +GQ
Sbjct: 1145 GPPGLQGL--PGPPGEKGEVGDVGSMGPHGAPGPRGP---QGPTGSEGTP-GLPGGVGQP 1198
Query: 842 GGGGFRFE----------GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPV--GGL 889
G G + E G+PG+ G G + +G G P G G +G P G
Sbjct: 1199 GAVGEKGERGDAGDPGPPGAPGI--PGPKGDIGEKGDSG-PSGAAGPPGKKGPPGEDGAK 1255
Query: 890 RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPL 947
GP G P G L P G P G +G G G GP G PG G GP
Sbjct: 1256 GSVGPTGLP-GDL---GPPGDP-GVSGIDGSPGEKGDPGDVGGP-GPPGASGEPGAPGPP 1309
Query: 948 LQQGVG--MRFEGPHGQSVAGLRFEGQHNQLG-----GNLRFEGPHGQPGV-GIR-FEGP 998
++G M EG G+ A +G+ G G + GP G+ G G+R GP
Sbjct: 1310 GKRGPSGHMGREGREGEKGA----KGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGP 1365
Query: 999 LVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHA--LRFDGQPGQPSLL--PRF 1052
+ + G G GP P G + G G GP+ E H + G PG+
Sbjct: 1366 VGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGL 1425
Query: 1053 DGLHGQPGPRFERTP-------GQPGPQRFDGPPGQQ--------VQPRFDGVPQRFDGP 1097
G+ G PGP+ + P G PGP GP GQ+ + PR D P GP
Sbjct: 1426 PGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGP 1485
Score = 69.7 bits (169), Expect = 2e-11
Identities = 100/319 (31%), Positives = 118/319 (36%), Gaps = 63/319 (19%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL 813
G S PS A P K G + + P L G PG G G +G G +
Sbjct: 1232 GDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDV 1291
Query: 814 GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPV 873
GG P G PG G P + GP G G G EG G + E P G P
Sbjct: 1292 GGPGPPGASGEPGAPGPPGK-RGPSGHMGREG--REGEKGAKGEPGPDG---------PP 1339
Query: 874 GGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
G G RG P G + EG G P P G+P G L G GP G GP
Sbjct: 1340 GRTGPMGARGPP-GRVGPEGLRGIP-------GPVGEP-GLLGAPGQMGPPGPL----GP 1386
Query: 934 HGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGI 993
G PG L+ G + E H + + G+ + +G G PGV
Sbjct: 1387 SGLPG---------LKGDTGPKGEKGHIGLIGLIGPPGEAGE-------KGDQGLPGV-- 1428
Query: 994 RFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQP-SLLPRF 1052
+GP +G GP P G L GP G GP L G G P S+ PR
Sbjct: 1429 --QGPPGPKGD----PGPPGPIGSLGHPGPPGVAGP-------LGQKGSKGSPGSMGPRG 1475
Query: 1053 D-GLHGQPGPRFERTPGQP 1070
D G G PGP PG P
Sbjct: 1476 DTGPAGPPGP-----PGAP 1489
Score = 47.0 bits (110), Expect = 1e-04
Identities = 50/175 (28%), Positives = 60/175 (34%), Gaps = 45/175 (25%)
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFE 1064
G +FEGP G + GP G GP G PG P G PGP
Sbjct: 387 GQQFEGPPGAPGPQGVVGPSGPPGP----------PGFPGDP----------GPPGP--A 424
Query: 1065 RTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRL 1124
PG PG GPPG + F F GP P+ Q + L
Sbjct: 425 GLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGP----------PVSFQQAQ----AQAVL 470
Query: 1125 ESVSFNQTGP-----YNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP-NFNGPHGP 1173
+ + GP PG GL + E+ + PQGP GPHGP
Sbjct: 471 QQTQLSMKGPPGPVGLTGRPGPVGLPGHPGL---KGEEGAEGPQGPRGLQGPHGP 522
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 98.6 bits (244), Expect = 4e-20
Identities = 142/448 (31%), Positives = 171/448 (38%), Gaps = 89/448 (19%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL 813
G + P A P K +G L+ I GPP PA G+PG G GP GP G
Sbjct: 746 GDAGPKGADGSPGK---DGVRGLTGPI-GPPGPA-----GAPGDKGESGPSGPAGPTGAR 796
Query: 814 GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQP 872
G GPPGP G F GP G G G + E G G + + P G GP G P
Sbjct: 797 GAPGDRGEPGPPGPAG----FAGPPGADGQPGAKGEPGDAGAKGDAGPPGP--AGPAGPP 850
Query: 873 -----VGGLRFEGHRGQ--PVGGLRFEGPHGQ--PVGGLRFDNPRGQPVGGLRFEGGHGP 923
VG +G RG P G F G G+ P G P G P G EGG GP
Sbjct: 851 GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP-GPAGKEGGKGP 909
Query: 924 SGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHG-------QSVAGLR----FE 970
G GP G+PG G GP ++G +GP G Q +AG R
Sbjct: 910 RGET----GPAGRPGEVGPPGPPGPAGEKG-SPGADGPAGAPGTPGPQGIAGQRGVVGLP 964
Query: 971 GQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR 1030
GQ + G GP G+PG +GP G GP P G + GP G+ G
Sbjct: 965 GQRGERGFP-GLPGPSGEPGK----QGP----SGASGERGPPGPMGPPGLAGPPGESGR- 1014
Query: 1031 FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGP--PGQQVQPRFD 1088
EG A +G PG+ P G G+ GP PG PG GP P + R +
Sbjct: 1015 -EG--APGAEGSPGRDG-SPGAKGDRGETGP--AGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 1089 GVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQ 1148
P GP +R P G QG R D +TG D +
Sbjct: 1069 TGPAGPAGPVGPVGARG--PAGPQGPRGDK-----------GETGEQGD----------R 1105
Query: 1149 GLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
G++ R P GP P PG Q
Sbjct: 1106 GIKGHRGFSGLQGPPGP----PGSPGEQ 1129
Score = 88.2 bits (217), Expect = 6e-17
Identities = 112/343 (32%), Positives = 137/343 (39%), Gaps = 54/343 (15%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLG---GGCPLRFEGPPGPVGTPLRFEG 836
+ GP P+ R G PG G GP F+GP G+ G P+ GPPGP G G
Sbjct: 177 VPGPMGPSGPR--GLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGK----NG 230
Query: 837 PIGQAGGGGFRFEGSPGLRFEGSPGGLR-FEGPGGQPVGGLRFEGHRG-QPVGGLRFE-- 892
G+AG G PG R P G R G G P +GHRG + G + +
Sbjct: 231 DDGEAGK-----PGRPGERGPPGPQGARGLPGTAGLP----GMKGHRGFSGLDGAKGDAG 281
Query: 893 --GPHGQP-----VGGLRFDNPRGQPVGGLRFEGGHGPSGA-----AIRFDGPHGQ--PG 938
GP G+P G PRG P G G GP+GA A GP G P
Sbjct: 282 PAGPKGEPGSPGENGAPGQMGPRGLP-GERGRPGAPGPAGARGNDGATGAAGPPGPTGPA 340
Query: 939 GGIRFEGPLLQQGVGMRFEGPHG-QSVAGLRFE-GQHNQLG--GNLRFEGPHGQPGV-GI 993
G F G + +G +GP G + G+R E G G G G GQPG G
Sbjct: 341 GPPGFPGAVGAKGEAGP-QGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA 399
Query: 994 RFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFD-GQPGQPSLLPRF 1052
+ G GPS P G GP G G G + D G G+P +
Sbjct: 400 NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE--PGAPGSKGDTGAKGEPGPV--- 454
Query: 1053 DGLHGQPGPRFER----TPGQPGPQRFDGPPGQQVQPRFDGVP 1091
G+ G PGP E G+PGP GPPG++ P G P
Sbjct: 455 -GVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Score = 87.4 bits (215), Expect = 1e-16
Identities = 112/334 (33%), Positives = 135/334 (40%), Gaps = 55/334 (16%)
Query: 782 GPPTP-ASLRFDGSPGQMGGGGP---LRFEGPQGQLGGGCPLRFEGPPGPVGTPLRF--E 835
GPP P ++ G+ G G GP F G G++G P GPPGP G + +
Sbjct: 848 GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGK 907
Query: 836 GPIGQAGGGGFRFE----GSPGLRFE-GSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGG 888
GP G+ G G E G PG E GSPG +GP G P G G RG VG
Sbjct: 908 GPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA---DGPAGAPGTPGPQGIAGQRGV-VGL 963
Query: 889 LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGP 946
G G P GL P G+P G GPSGA+ G G PG G GP
Sbjct: 964 PGQRGERGFP--GL--PGPSGEP-------GKQGPSGAS----GERGPPGPMGPPGLAGP 1008
Query: 947 LLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
+ G R P + G +G G G GP G PG GP+ G
Sbjct: 1009 PGESG---REGAPGAEGSPGR--DGSPGAKGDRGETGPAGPPGAPGAP-GAPGPVGPAGK 1062
Query: 1004 GGMRFE----GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPR--FDGLHG 1057
G R E GP+ P G + GP G GPR + G+ G + F GL G
Sbjct: 1063 SGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGET----GEQGDRGIKGHRGFSGLQG 1118
Query: 1058 QPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
PGP +PG+ GP GP G + P G P
Sbjct: 1119 PPGP--PGSPGEQGPSGASGPAGPRGPPGSAGAP 1150
Score = 85.5 bits (210), Expect = 4e-16
Identities = 130/420 (30%), Positives = 150/420 (35%), Gaps = 57/420 (13%)
Query: 777 SPRIDGPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFE 835
SP +G P R G G+ G GP G G G P GP GP G P
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP-GAV 349
Query: 836 GPIGQAGGGGFR-FEGSPGLRFE-GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
G G+AG G R EG G+R E G PG GP G P G GQP +G
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP-------GADGQPGA----KG 398
Query: 894 PHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFE-GPLLQQ 950
+G P G F RG P G G GP G + P + G + E GP+ Q
Sbjct: 399 ANGAPGIAGAPGFPGARG-PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ 457
Query: 951 GVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQ-GGGMRFE 1009
G GP G+ EG+ G GP G PG GP + G
Sbjct: 458 GP----PGPAGE-------EGKRGARGE----PGPTGLPGPPGERGGPGSRGFPGADGVA 502
Query: 1010 GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG-PRFERTPG 1068
GP P G GP G G E G+PG+ LP GL G PG P + G
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEA-------GRPGEAG-LPGAKGLTGSPGSPGPDGKTG 554
Query: 1069 QPGPQRFDGPPGQQVQP--RFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLES 1126
PGP DG PG P R F GP+ G G R P +
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP-----GKAGERGVPGPPGAVGP 609
Query: 1127 VSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHG----PGNQSFSNPL 1182
+ PPG A A +G Q F GP GP G PG Q L
Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP--AGPPGEAGKPGEQGVPGDL 667
Score = 80.5 bits (197), Expect = 1e-14
Identities = 133/444 (29%), Positives = 161/444 (36%), Gaps = 82/444 (18%)
Query: 771 EGPN-KLSPRIDGPPTPASLRF-DGSPGQMGGGGPLRFEGPQGQ--LGGGCP-------- 818
EGP PR GP PA DG PGQ G GP GP G LGG
Sbjct: 111 EGPKGDTGPR--GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYD 168
Query: 819 ------LRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGPGGQ 871
+ GP GP G P GP G G G F+G PG E G+ G + GP G
Sbjct: 169 EKSTGGISVPGPMGPSG-PRGLPGPPGAPGPQG--FQGPPGEPGEPGASGPMGPRGPPGP 225
Query: 872 PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP-----VGGLRFEGGHGPSGA 926
P G +G G+P G GP G P G G P G +G G +G
Sbjct: 226 P-GKNGDDGEAGKP-GRPGERGPPG-PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 282
Query: 927 AIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEG 984
A GP G+PG G G + +G+ P AG R G G
Sbjct: 283 A----GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG 338
Query: 985 PHGQPG----VGIRFE-GPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRF 1039
P G PG VG + E GP +G EGP G GP G GP
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQGPRGS----EGPQGVRGEPGPPGPAGAAGPAGNP----GA 390
Query: 1040 DGQPGQPSLLPRFDGLHGQPG----PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFD 1095
DGQPG G +G PG P F G GPQ GPPG + G P
Sbjct: 391 DGQPGA-------KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAP---- 439
Query: 1096 GPQHQQASRFDI-PLGLQGTRFDNHPSQRLESVSFNQTGPYN--DPPGNAFNAPSQGLQF 1152
G + ++ + P+G+QG + + + + GP PPG S+G
Sbjct: 440 GSKGDTGAKGEPGPVGVQGP--PGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF-- 495
Query: 1153 QRHEQIFDSPQGPNFNGPHGPGNQ 1176
P GP GP +
Sbjct: 496 ---------PGADGVAGPKGPAGE 510
Score = 80.5 bits (197), Expect = 1e-14
Identities = 133/419 (31%), Positives = 154/419 (36%), Gaps = 79/419 (18%)
Query: 782 GPPT-PASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT--PLRFEGPI 838
GPP P ++ G+ G+ G GP EGPQG G GPPGP G P G
Sbjct: 341 GPPGFPGAV---GAKGEAGPQGPRGSEGPQGVRGE------PGPPGPAGAAGPAGNPGAD 391
Query: 839 GQAGGGGFRFEGSPGLR----FEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGP 894
GQ G G G+PG+ F G+ G +GPGG P G G G P G G
Sbjct: 392 GQPGAKG--ANGAPGIAGAPGFPGARGPSGPQGPGGPP-GPKGNSGEPGAP-GSKGDTGA 447
Query: 895 HGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGG-GIR-FEGPLLQQGV 952
G+P G + P G P G G G G GP G+ GG G R F G GV
Sbjct: 448 KGEP-GPVGVQGPPG-PAGEEGKRGARGEPGPT-GLPGPPGERGGPGSRGFPG---ADGV 501
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFEGPLVQQGGGMRFEGP 1011
GP G AG R G+ GP G PG G E L G G
Sbjct: 502 A----GPKGP--AGER---------GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS 546
Query: 1012 SVPGGGLRIEGPLGQGG-PRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQP 1070
P G GP GQ G P G R GQ G P G G+PG ER G P
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPPGAR--GQAGVMG-FPGPKGAAGEPGKAGER--GVP 601
Query: 1071 GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN 1130
GP GP G+ + G P P G G R + P+ S F
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPG---------------PAGPAGERGEQGPA---GSPGFQ 643
Query: 1131 QTGPYNDPPGNAFNAPSQGL---------QFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1180
PPG A QG+ R E+ F +G GP GP +N
Sbjct: 644 GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG--VQGPPGPAGPRGAN 700
Score = 77.8 bits (190), Expect = 8e-14
Identities = 134/412 (32%), Positives = 153/412 (37%), Gaps = 56/412 (13%)
Query: 777 SPRIDGPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQLGG-GCPLR--FEGPPGPVGTPL 832
SP G P PA + G PG+ G G L GP G G G P +GPPGP G P
Sbjct: 639 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAG-PR 697
Query: 833 RFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEG-PGGQPVGGLRF-EGHRGQ--PVGG 888
G G G G G+PG GS G +G PG + GL +G RG P G
Sbjct: 698 GANGAPGNDGAKG--DAGAPGA--PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 753
Query: 889 LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGG-GIRFE-GP 946
G G V GL P G +G GPSG A GP G G G R E GP
Sbjct: 754 DGSPGKDG--VRGLTGPIGPPGPAGAPGDKGESGPSGPA----GPTGARGAPGDRGEPGP 807
Query: 947 LLQQGVGMRFEGPHG-QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG-- 1003
G F GP G G + E G+ GP G G GP+ G
Sbjct: 808 PGPAG----FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGP----PGPIGNVGAP 859
Query: 1004 GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRF 1063
G G + P G G G+ GP +A G PG P G G GPR
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA----GPPGPPGPA----GKEGGKGPRG 911
Query: 1064 ERTP-GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNHPS 1121
E P G+PG GPPG + G DGP A P G+ G R P
Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGA----DGP--AGAPGTPGPQGIAGQRGVVGLPG 965
Query: 1122 QRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQG-PNFNGPHG 1172
QR E GP +P QG E+ P G P GP G
Sbjct: 966 QRGERGFPGLPGPSGEP-------GKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Score = 76.6 bits (187), Expect = 2e-13
Identities = 108/330 (32%), Positives = 125/330 (37%), Gaps = 63/330 (19%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT--------PLR 833
GPP P G G+ GG GP GP G+ G P GPPGP G P
Sbjct: 893 GPPGPP-----GPAGKEGGKGPRGETGPAGRPGEVGP---PGPPGPAGEKGSPGADGPAG 944
Query: 834 FEGPIGQAGGGGFR-FEGSPGLRFE-GSPGGLRFEGPGGQP--VGGLRFEGHRGQP--VG 887
G G G G R G PG R E G PG GP G+P G G RG P +G
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGERGFPG---LPGPSGEPGKQGPSGASGERGPPGPMG 1001
Query: 888 GLRFEGPHGQPVGGLRFDNPRGQPV--GGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEG 945
GP G+ G G P G +G G +G A GP G PG G
Sbjct: 1002 PPGLAGPPGES-GREGAPGAEGSPGRDGSPGAKGDRGETGPA----GPPGAPGAP-GAPG 1055
Query: 946 PLLQQGV-GMRFE-GPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPG-VGIRFEGPLV 1000
P+ G G R E GP G + G +G G +GP G G G + + +
Sbjct: 1056 PVGPAGKSGDRGETGPAGPA-------GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Query: 1001 QQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG 1060
G +GP P G +GP G GP G PG P DGL+G PG
Sbjct: 1109 GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR-------GPPGSAGA-PGKDGLNGLPG 1160
Query: 1061 PRFERTP----------GQPGPQRFDGPPG 1080
P P G PGP GPPG
Sbjct: 1161 PIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Score = 75.1 bits (183), Expect = 5e-13
Identities = 109/331 (32%), Positives = 127/331 (38%), Gaps = 69/331 (20%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQ 812
GP P+ + P +GP +P GP A R G PGQ G G GP G+
Sbjct: 926 GPPGPAGEKGSPGA---DGPAG-APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 813 LGGGCPLRFEG---PPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPG 869
G P G PPGP+G P GP G++G EG+PG EGSPG R PG
Sbjct: 982 PGKQGPSGASGERGPPGPMGPP-GLAGPPGESGR-----EGAPGA--EGSPG--RDGSPG 1031
Query: 870 GQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIR 929
+ G RG+ GP G P G G PVG G G +G A
Sbjct: 1032 AK--------GDRGET-------GPAGPP-GAPGAPGAPG-PVGPAGKSGDRGETGPA-- 1072
Query: 930 FDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQP 989
GP G P G + GP QG P G G E + G+ F G G P
Sbjct: 1073 --GPAG-PVGPVGARGPAGPQG-------PRGDK--GETGEQGDRGIKGHRGFSGLQGPP 1120
Query: 990 GVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG-PRFEGCHALRFDGQPGQPSL 1048
G G +GPS G GP G G P +G + L G G P
Sbjct: 1121 G-----------PPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGL--PGPIGPPG- 1166
Query: 1049 LPRFDGLHGQPGPRFERTPGQPGPQRFDGPP 1079
PR G G GP PG PGP GPP
Sbjct: 1167 -PR--GRTGDAGP--VGPPGPPGPPGPPGPP 1192
Score = 72.8 bits (177), Expect = 2e-12
Identities = 127/428 (29%), Positives = 159/428 (37%), Gaps = 59/428 (13%)
Query: 781 DGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
DG +P G G G GP+G G P +G PG G P GP G
Sbjct: 97 DGSESPTDQETTGVEGPKGD------TGPRGPRGPAGPPGRDGIPGQPGLP-GPPGPPGP 149
Query: 841 AGGGGFRFEGSPGLRF---EGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQ 897
G G +P L + E S GG+ GP G P G G G P G F+GP G+
Sbjct: 150 PGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMG-PSGPRGLPGPPGAP-GPQGFQGPPGE 207
Query: 898 P--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV- 952
P G PRG P G G G +G R G G PG G G G+
Sbjct: 208 PGEPGASGPMGPRGPP-GPPGKNGDDGEAGKPGR-PGERGPPGPQGARGLPGTAGLPGMK 265
Query: 953 GMR-FEGPHG----QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIR--FEGPLVQQG-- 1003
G R F G G AG + E G GP G PG R GP +G
Sbjct: 266 GHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND 325
Query: 1004 ---GGMRFEGPSVPG------GGLRIEGPLGQGGPR-FEGCHALRFDGQPGQPSLLPRFD 1053
G GP+ P G + +G G GPR EG +R G+PG P
Sbjct: 326 GATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR--GEPGPPGPAGA-A 382
Query: 1054 GLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
G G PG GQPG + +G PG P F G + GPQ P G +G
Sbjct: 383 GPAGNPG-----ADGQPGAKGANGAPGIAGAPGFPGA-RGPSGPQGPGG-----PPGPKG 431
Query: 1114 TRFD-NHPSQRLESVSFNQTGP--YNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGP 1170
+ P + ++ + + GP PPG A +G + + P G
Sbjct: 432 NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGER---- 487
Query: 1171 HGPGNQSF 1178
GPG++ F
Sbjct: 488 GGPGSRGF 495
Score = 45.1 bits (105), Expect = 5e-04
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 780 IDGPPTPASLRFDGSPGQMG---GGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
+ GPP P GSPG+ G GP GP G G G PGP+G P G
Sbjct: 1116 LQGPPGPP-----GSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP----G 1166
Query: 837 PIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRF 878
P G+ G G G PG GP G P G F
Sbjct: 1167 PRGRTGDAG----------PVGPPGPPGPPGPPGPPSAGFDF 1198
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 98.6 bits (244), Expect = 4e-20
Identities = 153/506 (30%), Positives = 191/506 (37%), Gaps = 116/506 (22%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P+ R S GP + P + P+ GPP PA + G+PG+ G GP +G
Sbjct: 1067 PVGSPGERGSAGTAGPIGL----PGRPGPQ--GPPGPAGEK--GAPGEKGPQGPAGRDGV 1118
Query: 810 QGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGP 868
QG +G GP GP G+P +G G+ G G + GS G + E G PG +GP
Sbjct: 1119 QGPVG------LPGPAGPAGSPGE-DGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGP 1169
Query: 869 GGQP--VGGLRFEGHRGQ--------PVGGLRFEGPHGQPVGGLRFDNPRGQ-------- 910
G P GG G RGQ G F GP G P+G P G+
Sbjct: 1170 VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVG 1228
Query: 911 ---PVGGLRFEGGHGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHGQ 962
P G G GP+GA DGP G PG GG+ +G + G GP G+
Sbjct: 1229 PMGPPGPPGPRGPQGPNGA----DGPQGPPGSVGSVGGVGEKGEPGEAG----NPGPPGE 1280
Query: 963 S-VAGLRFE-GQHNQLG-----------GNLRFEGPHGQPG-VGIRFE-------GPLVQ 1001
+ V G + E G+ + G G +GP G PG VG + GP Q
Sbjct: 1281 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1340
Query: 1002 QG-GGMRFE-------GPSVPGGGLRIEGPLGQGGP----RFEGCHALR-------FDGQ 1042
G GG + E GP P G GP G+ GP EG + +G
Sbjct: 1341 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1400
Query: 1043 PGQ--------PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV---P 1091
PG+ P+ P +GL G PGP E+ G PG DGPPG P G+ P
Sbjct: 1401 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGLKGDP 1458
Query: 1092 QRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQ 1151
H P G QG + D S G P G GL
Sbjct: 1459 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL- 1517
Query: 1152 FQRHEQIFDSPQGPNFN-GPHGPGNQ 1176
PQGP N G GP Q
Sbjct: 1518 --------PGPQGPKGNKGSTGPAGQ 1535
Score = 97.8 bits (242), Expect = 7e-20
Identities = 145/487 (29%), Positives = 186/487 (38%), Gaps = 131/487 (26%)
Query: 753 DGPSRPSV-ARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
DG P++ A++ + I + + + GPP P L G PG +GG G +G G
Sbjct: 514 DGSKGPTISAQEAQAQAILQ---QARIALRGPPGPMGLT--GRPGPVGGPGSSGAKGESG 568
Query: 812 QLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGG-GGFRFEGSPGLR----FEGSPG----- 861
G P +GPPGP G P G G+ G GG G PG + F+G PG
Sbjct: 569 DPGPQGPRGVQGPPGPTGKP----GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDK 624
Query: 862 GLRFE-GPGGQP----VGGLRFE----GHRGQP--VGGLRFEGPHGQP-----VGGLRFD 905
G R E GP G P G+R E G RG P G GP G P G D
Sbjct: 625 GHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 684
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQ-SV 964
P G P G + +G GP G GP G PG +GP+ G +GP G+ +
Sbjct: 685 GPPG-PKGNMGPQGEPGPPGQQGN-PGPQGLPGP----QGPIGPPGE----KGPQGKPGL 734
Query: 965 AGL----------RFEGQHNQLG--------GNLRFEGPHGQPGV-GIR----------- 994
AGL EGQ + G G + + GP G G G+R
Sbjct: 735 AGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 794
Query: 995 -----FEGPLVQQG-----GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH--ALRFDGQ 1042
F+G + +G G + G P G GP G GP + L G
Sbjct: 795 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL 854
Query: 1043 PGQPSL--------LPRFDGLHGQ---------PGPRFERTP-------------GQPGP 1072
PG P P F G +G+ PGPR +R P G+PGP
Sbjct: 855 PGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP 914
Query: 1073 QRF---DGPPGQQVQ--PRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESV 1127
+ DGPPG + P+ P F GP+ P G G HP QR E+
Sbjct: 915 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-----PPGKDG--LPGHPGQRGETG 967
Query: 1128 SFNQTGP 1134
+TGP
Sbjct: 968 FQGKTGP 974
Score = 95.1 bits (235), Expect = 5e-19
Identities = 140/452 (30%), Positives = 167/452 (36%), Gaps = 69/452 (15%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P DG PG G GP GP GQ G P GP GP+G P +GP G+ G
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE-KGPQGKPG 733
Query: 843 GGGF-RFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRG----QPVGGLR----FE 892
G +G PG EG G GP G P G + + G RG V GL+ +
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIGYPGPRGVKGADGVRGLKGSKGEK 792
Query: 893 GPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLL 948
G G P G + RG+ VG + G GP G R GP G PG G +G L
Sbjct: 793 GEDGFPGFKGDMGLKGDRGE-VGQIGPRGEDGPEGPKGR-AGPTGDPGPSGQAGEKGKLG 850
Query: 949 QQGVG--MRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
G+ +GP G S F G + + G G GP GQ G GP +G
Sbjct: 851 VPGLPGYPGRQGPKG-STGFPGFPGANGEKGARGVAGKPGPRGQRGP----TGPRGSRGA 905
Query: 1004 -GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPR 1062
G GP GG GP G+ GP+ + F G G P P DGL G PG R
Sbjct: 906 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ-GPVGFPGPKGPPG-PPGKDGLPGHPGQR 963
Query: 1063 ----FERTPGQPGPQRF---------------------DGPPGQQVQPRFDGVPQRFDGP 1097
F+ G PGP GPPG+Q P G P
Sbjct: 964 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023
Query: 1098 QHQQASRFDIPLGLQG-------TRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQ 1148
Q S D P GL+G P + GP P G+A A
Sbjct: 1024 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI 1083
Query: 1149 GLQFQRHEQIFDSPQG----PNFNGPHGPGNQ 1176
GL + Q P G P GP GP +
Sbjct: 1084 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1115
Score = 88.6 bits (218), Expect = 4e-17
Identities = 116/380 (30%), Positives = 145/380 (38%), Gaps = 102/380 (26%)
Query: 782 GPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
GPP P L+ G PG+ G G + GP G G P G GP G P G +G
Sbjct: 1204 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP----GSVGS 1259
Query: 841 AGGGGFRFE-------GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
GG G + E G PG G P G R E P G G +G P +G
Sbjct: 1260 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD----DG 1315
Query: 894 PHGQP--VGGLRFDNPRGQP-------VGGLRFEGGH-------GPSGAAIRFDGPHGQP 937
P G P VG P G+P VGG + E G GPSG A GP G P
Sbjct: 1316 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----GPPGPP 1371
Query: 938 G-----GGIRFEGPLLQQGVGMRF--EGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG 990
G G EG ++G EGP G++ G + +GP G+PG
Sbjct: 1372 GKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT--------------GPVGPQGPAGKPG 1417
Query: 991 V-GIR-FEGPLVQQG--GGMRFEGPSVPGG-----GLR----------------IEGPLG 1025
G+R GP+ +QG G +GP P G GL+ + GP G
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1477
Query: 1026 QGG-------PRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFER---------- 1065
+ G P +G + DG P P P GL G GP+ +
Sbjct: 1478 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1537
Query: 1066 TPGQPGPQRFDGPPGQQVQP 1085
G PGP GPPG+ +QP
Sbjct: 1538 DSGLPGPPGSPGPPGEVIQP 1557
Score = 73.9 bits (180), Expect = 1e-12
Identities = 106/333 (31%), Positives = 127/333 (38%), Gaps = 81/333 (24%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
++GPP PA GP GP G +GP GP G P GP G
Sbjct: 452 VEGPPGPA--------------GPAGIMGPPG---------LQGPTGPPGDP-GDRGPPG 487
Query: 840 QAGGGGFRFEGSPGLRFEGSPGGL-----RFEGPG--GQPVGGLRFEGHRGQPVGGLRFE 892
+ G G+ GL G PG + R+ G G G + + +
Sbjct: 488 RPG-----LPGADGL--PGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 540
Query: 893 GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
GP G P+G R PVGG G G SG GP G P G GP + G
Sbjct: 541 GPPG-PMG----LTGRPGPVGGPGSSGAKGESGD----PGPQG-PRGVQGPPGPTGKPGK 590
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFE-GPLVQQG----GGM 1006
R G+ + G G+ F+G G PG G R E GP G GM
Sbjct: 591 RGRPGADGGRGMPG------EPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGM 644
Query: 1007 RFEGPSVPGGGLRIE-GPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER 1065
R E + GL E GP G GPR G PGQP + G+ G PGP+
Sbjct: 645 RGEDGEIGPRGLPGEAGPRGLLGPR-------GTPGAPGQPGMA----GVDGPPGPK--- 690
Query: 1066 TPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
G GPQ GPPGQQ P G+P GPQ
Sbjct: 691 --GNMGPQGEPGPPGQQGNPGPQGLP----GPQ 717
Score = 64.3 bits (155), Expect = 9e-10
Identities = 115/394 (29%), Positives = 140/394 (35%), Gaps = 57/394 (14%)
Query: 809 PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGP 868
P + G G P + T + G G+ G G PG+ EG PG GP
Sbjct: 409 PNEEFGPGVPAETD----ITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGP---AGP 461
Query: 869 GGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFE---GGHGPSG 925
G +G +G G P G GP G+P G D G P L GG G G
Sbjct: 462 AG-IMGPPGLQGPTGPP-GDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGGDGSKG 518
Query: 926 AAIRFDGPHGQ---PGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRF 982
I Q I GP G+ R G +G + E G
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 578
Query: 983 EGPHGQPGVGIRFEGPLVQQGGGM----------RFEG-PSVPG--GGLRIEGPLGQGGP 1029
+GP G G + P G GM F+G P +PG G GP G GP
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Query: 1030 RFEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR-FERTPGQPGPQRFDGPPGQQVQPRF 1087
G +R DG+ G P LP G G GPR PGQPG DGPPG P+
Sbjct: 639 --PGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKG 691
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP-----PGNA 1142
+ PQ GP QQ + P GL G + P + GP P PG
Sbjct: 692 NMGPQGEPGPPGQQGN--PGPQGLPGPQGPIGPP--------GEKGPQGKPGLAGLPGAD 741
Query: 1143 FNAPSQGLQFQRHEQIFDSPQGP----NFNGPHG 1172
G + Q E+ P GP + GP G
Sbjct: 742 GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 775
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 98.6 bits (244), Expect = 4e-20
Identities = 153/506 (30%), Positives = 191/506 (37%), Gaps = 116/506 (22%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P+ R S GP + P + P+ GPP PA + G+PG+ G GP +G
Sbjct: 1016 PVGSPGERGSAGTAGPIGL----PGRPGPQ--GPPGPAGEK--GAPGEKGPQGPAGRDGV 1067
Query: 810 QGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGP 868
QG +G GP GP G+P +G G+ G G + GS G + E G PG +GP
Sbjct: 1068 QGPVG------LPGPAGPAGSPGE-DGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGP 1118
Query: 869 GGQP--VGGLRFEGHRGQ--------PVGGLRFEGPHGQPVGGLRFDNPRGQ-------- 910
G P GG G RGQ G F GP G P+G P G+
Sbjct: 1119 VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVG 1177
Query: 911 ---PVGGLRFEGGHGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHGQ 962
P G G GP+GA DGP G PG GG+ +G + G GP G+
Sbjct: 1178 PMGPPGPPGPRGPQGPNGA----DGPQGPPGSVGSVGGVGEKGEPGEAG----NPGPPGE 1229
Query: 963 S-VAGLRFE-GQHNQLG-----------GNLRFEGPHGQPG-VGIRFE-------GPLVQ 1001
+ V G + E G+ + G G +GP G PG VG + GP Q
Sbjct: 1230 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1289
Query: 1002 QG-GGMRFE-------GPSVPGGGLRIEGPLGQGGP----RFEGCHALR-------FDGQ 1042
G GG + E GP P G GP G+ GP EG + +G
Sbjct: 1290 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1349
Query: 1043 PGQ--------PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV---P 1091
PG+ P+ P +GL G PGP E+ G PG DGPPG P G+ P
Sbjct: 1350 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGLKGDP 1407
Query: 1092 QRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQ 1151
H P G QG + D S G P G GL
Sbjct: 1408 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL- 1466
Query: 1152 FQRHEQIFDSPQGPNFN-GPHGPGNQ 1176
PQGP N G GP Q
Sbjct: 1467 --------PGPQGPKGNKGSTGPAGQ 1484
Score = 97.8 bits (242), Expect = 7e-20
Identities = 145/487 (29%), Positives = 186/487 (38%), Gaps = 131/487 (26%)
Query: 753 DGPSRPSV-ARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
DG P++ A++ + I + + + GPP P L G PG +GG G +G G
Sbjct: 463 DGSKGPTISAQEAQAQAILQ---QARIALRGPPGPMGLT--GRPGPVGGPGSSGAKGESG 517
Query: 812 QLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGG-GGFRFEGSPGLR----FEGSPG----- 861
G P +GPPGP G P G G+ G GG G PG + F+G PG
Sbjct: 518 DPGPQGPRGVQGPPGPTGKP----GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDK 573
Query: 862 GLRFE-GPGGQP----VGGLRFE----GHRGQP--VGGLRFEGPHGQP-----VGGLRFD 905
G R E GP G P G+R E G RG P G GP G P G D
Sbjct: 574 GHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 633
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQ-SV 964
P G P G + +G GP G GP G PG +GP+ G +GP G+ +
Sbjct: 634 GPPG-PKGNMGPQGEPGPPGQQGN-PGPQGLPGP----QGPIGPPGE----KGPQGKPGL 683
Query: 965 AGL----------RFEGQHNQLG--------GNLRFEGPHGQPGV-GIR----------- 994
AGL EGQ + G G + + GP G G G+R
Sbjct: 684 AGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 743
Query: 995 -----FEGPLVQQG-----GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH--ALRFDGQ 1042
F+G + +G G + G P G GP G GP + L G
Sbjct: 744 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL 803
Query: 1043 PGQPSL--------LPRFDGLHGQ---------PGPRFERTP-------------GQPGP 1072
PG P P F G +G+ PGPR +R P G+PGP
Sbjct: 804 PGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP 863
Query: 1073 QRF---DGPPGQQVQ--PRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESV 1127
+ DGPPG + P+ P F GP+ P G G HP QR E+
Sbjct: 864 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-----PPGKDG--LPGHPGQRGETG 916
Query: 1128 SFNQTGP 1134
+TGP
Sbjct: 917 FQGKTGP 923
Score = 95.1 bits (235), Expect = 5e-19
Identities = 140/452 (30%), Positives = 167/452 (36%), Gaps = 69/452 (15%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P DG PG G GP GP GQ G P GP GP+G P +GP G+ G
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE-KGPQGKPG 682
Query: 843 GGGF-RFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRG----QPVGGLR----FE 892
G +G PG EG G GP G P G + + G RG V GL+ +
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIGYPGPRGVKGADGVRGLKGSKGEK 741
Query: 893 GPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLL 948
G G P G + RG+ VG + G GP G R GP G PG G +G L
Sbjct: 742 GEDGFPGFKGDMGLKGDRGE-VGQIGPRGEDGPEGPKGR-AGPTGDPGPSGQAGEKGKLG 799
Query: 949 QQGVG--MRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
G+ +GP G S F G + + G G GP GQ G GP +G
Sbjct: 800 VPGLPGYPGRQGPKG-STGFPGFPGANGEKGARGVAGKPGPRGQRGP----TGPRGSRGA 854
Query: 1004 -GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPR 1062
G GP GG GP G+ GP+ + F G G P P DGL G PG R
Sbjct: 855 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ-GPVGFPGPKGPPG-PPGKDGLPGHPGQR 912
Query: 1063 ----FERTPGQPGPQRF---------------------DGPPGQQVQPRFDGVPQRFDGP 1097
F+ G PGP GPPG+Q P G P
Sbjct: 913 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972
Query: 1098 QHQQASRFDIPLGLQG-------TRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQ 1148
Q S D P GL+G P + GP P G+A A
Sbjct: 973 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI 1032
Query: 1149 GLQFQRHEQIFDSPQG----PNFNGPHGPGNQ 1176
GL + Q P G P GP GP +
Sbjct: 1033 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1064
Score = 88.6 bits (218), Expect = 4e-17
Identities = 116/380 (30%), Positives = 145/380 (38%), Gaps = 102/380 (26%)
Query: 782 GPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
GPP P L+ G PG+ G G + GP G G P G GP G P G +G
Sbjct: 1153 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP----GSVGS 1208
Query: 841 AGGGGFRFE-------GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
GG G + E G PG G P G R E P G G +G P +G
Sbjct: 1209 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD----DG 1264
Query: 894 PHGQP--VGGLRFDNPRGQP-------VGGLRFEGGH-------GPSGAAIRFDGPHGQP 937
P G P VG P G+P VGG + E G GPSG A GP G P
Sbjct: 1265 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----GPPGPP 1320
Query: 938 G-----GGIRFEGPLLQQGVGMRF--EGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG 990
G G EG ++G EGP G++ G + +GP G+PG
Sbjct: 1321 GKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT--------------GPVGPQGPAGKPG 1366
Query: 991 V-GIR-FEGPLVQQG--GGMRFEGPSVPGG-----GLR----------------IEGPLG 1025
G+R GP+ +QG G +GP P G GL+ + GP G
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1426
Query: 1026 QGG-------PRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFER---------- 1065
+ G P +G + DG P P P GL G GP+ +
Sbjct: 1427 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1486
Query: 1066 TPGQPGPQRFDGPPGQQVQP 1085
G PGP GPPG+ +QP
Sbjct: 1487 DSGLPGPPGSPGPPGEVIQP 1506
Score = 73.9 bits (180), Expect = 1e-12
Identities = 106/333 (31%), Positives = 127/333 (38%), Gaps = 81/333 (24%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
++GPP PA GP GP G +GP GP G P GP G
Sbjct: 401 VEGPPGPA--------------GPAGIMGPPG---------LQGPTGPPGDP-GDRGPPG 436
Query: 840 QAGGGGFRFEGSPGLRFEGSPGGL-----RFEGPG--GQPVGGLRFEGHRGQPVGGLRFE 892
+ G G+ GL G PG + R+ G G G + + +
Sbjct: 437 RPG-----LPGADGL--PGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 489
Query: 893 GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
GP G P+G R PVGG G G SG GP G P G GP + G
Sbjct: 490 GPPG-PMG----LTGRPGPVGGPGSSGAKGESGD----PGPQG-PRGVQGPPGPTGKPGK 539
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFE-GPLVQQG----GGM 1006
R G+ + G G+ F+G G PG G R E GP G GM
Sbjct: 540 RGRPGADGGRGMPG------EPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGM 593
Query: 1007 RFEGPSVPGGGLRIE-GPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER 1065
R E + GL E GP G GPR G PGQP + G+ G PGP+
Sbjct: 594 RGEDGEIGPRGLPGEAGPRGLLGPR-------GTPGAPGQPGMA----GVDGPPGPK--- 639
Query: 1066 TPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
G GPQ GPPGQQ P G+P GPQ
Sbjct: 640 --GNMGPQGEPGPPGQQGNPGPQGLP----GPQ 666
Score = 64.3 bits (155), Expect = 9e-10
Identities = 115/394 (29%), Positives = 140/394 (35%), Gaps = 57/394 (14%)
Query: 809 PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGP 868
P + G G P + T + G G+ G G PG+ EG PG GP
Sbjct: 358 PNEEFGPGVPAETD----ITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGP---AGP 410
Query: 869 GGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFE---GGHGPSG 925
G +G +G G P G GP G+P G D G P L GG G G
Sbjct: 411 AG-IMGPPGLQGPTGPP-GDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGGDGSKG 467
Query: 926 AAIRFDGPHGQ---PGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRF 982
I Q I GP G+ R G +G + E G
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 527
Query: 983 EGPHGQPGVGIRFEGPLVQQGGGM----------RFEG-PSVPG--GGLRIEGPLGQGGP 1029
+GP G G + P G GM F+G P +PG G GP G GP
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Query: 1030 RFEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR-FERTPGQPGPQRFDGPPGQQVQPRF 1087
G +R DG+ G P LP G G GPR PGQPG DGPPG P+
Sbjct: 588 --PGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKG 640
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP-----PGNA 1142
+ PQ GP QQ + P GL G + P + GP P PG
Sbjct: 641 NMGPQGEPGPPGQQGN--PGPQGLPGPQGPIGPP--------GEKGPQGKPGLAGLPGAD 690
Query: 1143 FNAPSQGLQFQRHEQIFDSPQGP----NFNGPHG 1172
G + Q E+ P GP + GP G
Sbjct: 691 GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 724
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 98.6 bits (244), Expect = 4e-20
Identities = 153/506 (30%), Positives = 191/506 (37%), Gaps = 116/506 (22%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
P+ R S GP + P + P+ GPP PA + G+PG+ G GP +G
Sbjct: 1055 PVGSPGERGSAGTAGPIGL----PGRPGPQ--GPPGPAGEK--GAPGEKGPQGPAGRDGV 1106
Query: 810 QGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGP 868
QG +G GP GP G+P +G G+ G G + GS G + E G PG +GP
Sbjct: 1107 QGPVG------LPGPAGPAGSPGE-DGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGP 1157
Query: 869 GGQP--VGGLRFEGHRGQ--------PVGGLRFEGPHGQPVGGLRFDNPRGQ-------- 910
G P GG G RGQ G F GP G P+G P G+
Sbjct: 1158 VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVG 1216
Query: 911 ---PVGGLRFEGGHGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHGQ 962
P G G GP+GA DGP G PG GG+ +G + G GP G+
Sbjct: 1217 PMGPPGPPGPRGPQGPNGA----DGPQGPPGSVGSVGGVGEKGEPGEAG----NPGPPGE 1268
Query: 963 S-VAGLRFE-GQHNQLG-----------GNLRFEGPHGQPG-VGIRFE-------GPLVQ 1001
+ V G + E G+ + G G +GP G PG VG + GP Q
Sbjct: 1269 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1328
Query: 1002 QG-GGMRFE-------GPSVPGGGLRIEGPLGQGGP----RFEGCHALR-------FDGQ 1042
G GG + E GP P G GP G+ GP EG + +G
Sbjct: 1329 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1388
Query: 1043 PGQ--------PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV---P 1091
PG+ P+ P +GL G PGP E+ G PG DGPPG P G+ P
Sbjct: 1389 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGLKGDP 1446
Query: 1092 QRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQ 1151
H P G QG + D S G P G GL
Sbjct: 1447 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL- 1505
Query: 1152 FQRHEQIFDSPQGPNFN-GPHGPGNQ 1176
PQGP N G GP Q
Sbjct: 1506 --------PGPQGPKGNKGSTGPAGQ 1523
Score = 97.8 bits (242), Expect = 7e-20
Identities = 145/487 (29%), Positives = 186/487 (38%), Gaps = 131/487 (26%)
Query: 753 DGPSRPSV-ARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
DG P++ A++ + I + + + GPP P L G PG +GG G +G G
Sbjct: 502 DGSKGPTISAQEAQAQAILQ---QARIALRGPPGPMGLT--GRPGPVGGPGSSGAKGESG 556
Query: 812 QLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGG-GGFRFEGSPGLR----FEGSPG----- 861
G P +GPPGP G P G G+ G GG G PG + F+G PG
Sbjct: 557 DPGPQGPRGVQGPPGPTGKP----GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDK 612
Query: 862 GLRFE-GPGGQP----VGGLRFE----GHRGQP--VGGLRFEGPHGQP-----VGGLRFD 905
G R E GP G P G+R E G RG P G GP G P G D
Sbjct: 613 GHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 672
Query: 906 NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQ-SV 964
P G P G + +G GP G GP G PG +GP+ G +GP G+ +
Sbjct: 673 GPPG-PKGNMGPQGEPGPPGQQGN-PGPQGLPGP----QGPIGPPGE----KGPQGKPGL 722
Query: 965 AGL----------RFEGQHNQLG--------GNLRFEGPHGQPGV-GIR----------- 994
AGL EGQ + G G + + GP G G G+R
Sbjct: 723 AGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 782
Query: 995 -----FEGPLVQQG-----GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH--ALRFDGQ 1042
F+G + +G G + G P G GP G GP + L G
Sbjct: 783 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL 842
Query: 1043 PGQPSL--------LPRFDGLHGQ---------PGPRFERTP-------------GQPGP 1072
PG P P F G +G+ PGPR +R P G+PGP
Sbjct: 843 PGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP 902
Query: 1073 QRF---DGPPGQQVQ--PRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESV 1127
+ DGPPG + P+ P F GP+ P G G HP QR E+
Sbjct: 903 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-----PPGKDG--LPGHPGQRGETG 955
Query: 1128 SFNQTGP 1134
+TGP
Sbjct: 956 FQGKTGP 962
Score = 95.1 bits (235), Expect = 5e-19
Identities = 140/452 (30%), Positives = 167/452 (36%), Gaps = 69/452 (15%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAG 842
P P DG PG G GP GP GQ G P GP GP+G P +GP G+ G
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE-KGPQGKPG 721
Query: 843 GGGF-RFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRG----QPVGGLR----FE 892
G +G PG EG G GP G P G + + G RG V GL+ +
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIGYPGPRGVKGADGVRGLKGSKGEK 780
Query: 893 GPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLL 948
G G P G + RG+ VG + G GP G R GP G PG G +G L
Sbjct: 781 GEDGFPGFKGDMGLKGDRGE-VGQIGPRGEDGPEGPKGR-AGPTGDPGPSGQAGEKGKLG 838
Query: 949 QQGVG--MRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQG- 1003
G+ +GP G S F G + + G G GP GQ G GP +G
Sbjct: 839 VPGLPGYPGRQGPKG-STGFPGFPGANGEKGARGVAGKPGPRGQRGP----TGPRGSRGA 893
Query: 1004 -GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPR 1062
G GP GG GP G+ GP+ + F G G P P DGL G PG R
Sbjct: 894 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ-GPVGFPGPKGPPG-PPGKDGLPGHPGQR 951
Query: 1063 ----FERTPGQPGPQRF---------------------DGPPGQQVQPRFDGVPQRFDGP 1097
F+ G PGP GPPG+Q P G P
Sbjct: 952 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011
Query: 1098 QHQQASRFDIPLGLQG-------TRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQ 1148
Q S D P GL+G P + GP P G+A A
Sbjct: 1012 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI 1071
Query: 1149 GLQFQRHEQIFDSPQG----PNFNGPHGPGNQ 1176
GL + Q P G P GP GP +
Sbjct: 1072 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1103
Score = 88.6 bits (218), Expect = 4e-17
Identities = 116/380 (30%), Positives = 145/380 (38%), Gaps = 102/380 (26%)
Query: 782 GPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
GPP P L+ G PG+ G G + GP G G P G GP G P G +G
Sbjct: 1192 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP----GSVGS 1247
Query: 841 AGGGGFRFE-------GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
GG G + E G PG G P G R E P G G +G P +G
Sbjct: 1248 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD----DG 1303
Query: 894 PHGQP--VGGLRFDNPRGQP-------VGGLRFEGGH-------GPSGAAIRFDGPHGQP 937
P G P VG P G+P VGG + E G GPSG A GP G P
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----GPPGPP 1359
Query: 938 G-----GGIRFEGPLLQQGVGMRF--EGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG 990
G G EG ++G EGP G++ G + +GP G+PG
Sbjct: 1360 GKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT--------------GPVGPQGPAGKPG 1405
Query: 991 V-GIR-FEGPLVQQG--GGMRFEGPSVPGG-----GLR----------------IEGPLG 1025
G+R GP+ +QG G +GP P G GL+ + GP G
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1465
Query: 1026 QGG-------PRFEGCHALRFDGQ---PGQPSLLPRFDGLHGQPGPRFER---------- 1065
+ G P +G + DG P P P GL G GP+ +
Sbjct: 1466 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1525
Query: 1066 TPGQPGPQRFDGPPGQQVQP 1085
G PGP GPPG+ +QP
Sbjct: 1526 DSGLPGPPGSPGPPGEVIQP 1545
Score = 73.9 bits (180), Expect = 1e-12
Identities = 106/333 (31%), Positives = 127/333 (38%), Gaps = 81/333 (24%)
Query: 780 IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG 839
++GPP PA GP GP G +GP GP G P GP G
Sbjct: 440 VEGPPGPA--------------GPAGIMGPPG---------LQGPTGPPGDP-GDRGPPG 475
Query: 840 QAGGGGFRFEGSPGLRFEGSPGGL-----RFEGPG--GQPVGGLRFEGHRGQPVGGLRFE 892
+ G G+ GL G PG + R+ G G G + + +
Sbjct: 476 RPG-----LPGADGL--PGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 528
Query: 893 GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV 952
GP G P+G R PVGG G G SG GP G P G GP + G
Sbjct: 529 GPPG-PMG----LTGRPGPVGGPGSSGAKGESGD----PGPQG-PRGVQGPPGPTGKPGK 578
Query: 953 GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFE-GPLVQQG----GGM 1006
R G+ + G G+ F+G G PG G R E GP G GM
Sbjct: 579 RGRPGADGGRGMPG------EPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGM 632
Query: 1007 RFEGPSVPGGGLRIE-GPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER 1065
R E + GL E GP G GPR G PGQP + G+ G PGP+
Sbjct: 633 RGEDGEIGPRGLPGEAGPRGLLGPR-------GTPGAPGQPGMA----GVDGPPGPK--- 678
Query: 1066 TPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
G GPQ GPPGQQ P G+P GPQ
Sbjct: 679 --GNMGPQGEPGPPGQQGNPGPQGLP----GPQ 705
Score = 64.3 bits (155), Expect = 9e-10
Identities = 115/394 (29%), Positives = 140/394 (35%), Gaps = 57/394 (14%)
Query: 809 PQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGP 868
P + G G P + T + G G+ G G PG+ EG PG GP
Sbjct: 397 PNEEFGPGVPAETD----ITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGP---AGP 449
Query: 869 GGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFE---GGHGPSG 925
G +G +G G P G GP G+P G D G P L GG G G
Sbjct: 450 AG-IMGPPGLQGPTGPP-GDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGGDGSKG 506
Query: 926 AAIRFDGPHGQ---PGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRF 982
I Q I GP G+ R G +G + E G
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 566
Query: 983 EGPHGQPGVGIRFEGPLVQQGGGM----------RFEG-PSVPG--GGLRIEGPLGQGGP 1029
+GP G G + P G GM F+G P +PG G GP G GP
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Query: 1030 RFEGCHALR-FDGQPGQPSLLPRFDGLHGQPGPR-FERTPGQPGPQRFDGPPGQQVQPRF 1087
G +R DG+ G P LP G G GPR PGQPG DGPPG P+
Sbjct: 627 --PGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKG 679
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP-----PGNA 1142
+ PQ GP QQ + P GL G + P + GP P PG
Sbjct: 680 NMGPQGEPGPPGQQGN--PGPQGLPGPQGPIGPP--------GEKGPQGKPGLAGLPGAD 729
Query: 1143 FNAPSQGLQFQRHEQIFDSPQGP----NFNGPHG 1172
G + Q E+ P GP + GP G
Sbjct: 730 GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 763
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 98.2 bits (243), Expect = 5e-20
Identities = 113/353 (32%), Positives = 145/353 (41%), Gaps = 85/353 (24%)
Query: 783 PPTPASLRFD-----------GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT- 830
PPTP S + G G+MG GP+ GP+G +G P+ GP G G
Sbjct: 460 PPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPKGEKGDV 519
Query: 831 --------------PLRFEGPIGQAGGGGFRFEGSPG-LRFEGSPGGLRFEGPGGQP--- 872
L GP G+ G G R G PG L G PG + GP G P
Sbjct: 520 GIGPFGQGEKGEKGSLGLPGPPGRDGSKGMR--GEPGELGEPGLPGEVGMRGPQGPPGLP 577
Query: 873 -----VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAA 927
VG +G RG+ +G G+ G D G+P G +G GPSG A
Sbjct: 578 GPPGRVGAPGLQGERGE-------KGTRGEK-GERGLDGFPGKP-GDTGQQGRPGPSGVA 628
Query: 928 --------IRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVA----GLRFEGQHNQ 975
+ GP G PG ++ EG +QG GP G A G R
Sbjct: 629 GPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGA----PGPRGHQGAPGPPGAR------- 677
Query: 976 LGGNLRFEGPHGQPGV-GIR-FEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGG-PR 1030
G + EG G PG+ G+R +G + G G + +GP P G + GP G GG P
Sbjct: 678 --GPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPG---VPGPPGPGGSPG 732
Query: 1031 FEGCHALRFDGQPGQPSLL--PRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQ 1081
G + F G+PG P P DG +G PGP T G+PG + DG PG+
Sbjct: 733 LPG--EIGFPGKPGPPGPTGPPGKDGPNGPPGP--PGTKGEPGERGEDGLPGK 781
Score = 95.1 bits (235), Expect = 5e-19
Identities = 114/340 (33%), Positives = 139/340 (40%), Gaps = 65/340 (19%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-G 850
+G PG+ G GP +GPQG G P G PG G P GP G G G + E G
Sbjct: 1302 EGLPGKDGDTGPTGPQGPQGPRG---PPGKNGSPGSPGEP----GPSGTPGQKGSKGENG 1354
Query: 851 SPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNP- 907
SPGL PG L GP G+P G EG G+P G F+G G P G++ D
Sbjct: 1355 SPGL-----PGFLGPRGPPGEPGEKGVPGKEGVPGKP-GEPGFKGERGDP--GIKGDKGP 1406
Query: 908 ---RGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV-GMRFEGPHG 961
+GQP G G G +G GP G PG G + GP Q G G+R E P
Sbjct: 1407 PGGKGQP-GDPGIPGHKGHTGLM----GPQGLPGENGPVGPPGPPGQPGFPGLRGESPSM 1461
Query: 962 QSVAGLRFEGQHNQLGGNLRF----------------EGPHGQPGVGIRFEGPLVQQGGG 1005
+++ L E QL L + GP G PG + L + G
Sbjct: 1462 ETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPG-----KDGLPGRAGP 1516
Query: 1006 MRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL-------LPRFDGLHGQ 1058
M G GG +EGP G GP+ E G PG P + P G G+
Sbjct: 1517 MGEPGRPGQGG---LEGPSGPIGPKGER----GAKGDPGAPGVGLRGEMGPPGIPGQPGE 1569
Query: 1059 PGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
PG + PG PGPQ GP G P G P + D Q
Sbjct: 1570 PGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQ 1609
Score = 89.0 bits (219), Expect = 3e-17
Identities = 113/336 (33%), Positives = 138/336 (41%), Gaps = 63/336 (18%)
Query: 793 GSPGQMGGGGPLRF---EGPQGQLGGGCPLRFEGPPGPVGTPLR--------FEGPIGQA 841
G+PG G G + EG G+ G P +GP GP G P + GP G
Sbjct: 1285 GAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTP 1344
Query: 842 GGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQP 898
G G + E GSPGL PG L GP G+P G EG G+P G F+G G P
Sbjct: 1345 GQKGSKGENGSPGL-----PGFLGPRGPPGEPGEKGVPGKEGVPGKP-GEPGFKGERGDP 1398
Query: 899 VGGLRFD----NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV 952
G++ D +GQP G G G +G GP G PG G + GP Q G
Sbjct: 1399 --GIKGDKGPPGGKGQP-GDPGIPGHKGHTGLM----GPQGLPGENGPVGPPGPPGQPGF 1451
Query: 953 -GMRFEGPHGQSVAGLRFEGQHNQLGGNLRF-------------------EGPHGQPGVG 992
G+R E P +++ L E QL L + GP G+ G+
Sbjct: 1452 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 1511
Query: 993 IRFEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALR----FDGQPGQP 1046
R GP+ + G G EGPS P G G G G G GQPG+P
Sbjct: 1512 GR-AGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP 1570
Query: 1047 SLLPRFDGLHGQPGPRFERTP-GQPGPQRFDGPPGQ 1081
DGL G PGP+ E P G PG GPPGQ
Sbjct: 1571 GYAK--DGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1604
Score = 85.5 bits (210), Expect = 4e-16
Identities = 128/442 (28%), Positives = 166/442 (37%), Gaps = 61/442 (13%)
Query: 754 GPSRPSVAR--DGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
GP+ P A+ +G N +P G P P+ G PG +G G G G
Sbjct: 895 GPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPS-----GPPGSVGAPGLRGTPGKDG 949
Query: 812 QLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQ 871
+ G EG PGPVG P G G G G +G PGLR GSPG GP G
Sbjct: 950 ERGEKGAAGEEGSPGPVG-PRGDPGAPGLPGPPGKGKDGEPGLR--GSPG---LPGPLGT 1003
Query: 872 PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFD 931
+ G +GG +G G P G RG P G+ G GPSG
Sbjct: 1004 KAACGKVRGSENCALGGQCVKGDRGAP-GIPGSPGSRGDP--GIGVAGPPGPSGPP---- 1056
Query: 932 GPHGQPG--GGIRFEGPLLQQGVGMRF--------EGPHGQ-SVAGLRFEGQHNQLGGNL 980
G G PG G F GP QG R GP G+ ++ L G N L ++
Sbjct: 1057 GDKGSPGSRGLPGFPGP---QGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDV 1113
Query: 981 RFEGPHGQPGV----GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHA 1036
+ P G PG+ G + + + + G EG G + GP G GP+
Sbjct: 1114 CNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQ------ 1167
Query: 1037 LRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDG 1096
G G+ DG GQ G + G PG F GPPG P DG+
Sbjct: 1168 ----GSQGERGA----DGEVGQKGDQ-----GHPGVPGFMGPPGNPGPPGADGIAGAAGP 1214
Query: 1097 PQHQQASRFDIPLGLQG-TRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRH 1155
P Q + + P G QG + P + + + GP + PG A G + R
Sbjct: 1215 PGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE-PGKAGEPGLPGPEGARG 1273
Query: 1156 EQIFDSPQGPNFNGPHGPGNQS 1177
F G +G GP +S
Sbjct: 1274 PPGFKGHTGD--SGAPGPRGES 1293
Score = 78.2 bits (191), Expect = 6e-14
Identities = 152/541 (28%), Positives = 192/541 (35%), Gaps = 119/541 (21%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P + GPP P G PG++G G GP G G P GPPGP GT +G
Sbjct: 719 PGVPGPPGPGGS--PGLPGEIGFPGKPGPPGPTGPPGKDGP---NGPPGPPGT----KGE 769
Query: 838 IGQAGGGGFRFEGSPGLRFEGSPGGLRF----EGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
G+ G G G PGLR E GL +G G P G F G RG+ G +G
Sbjct: 770 PGERGEDGL--PGKPGLRGEIGEQGLAGRPGEKGEAGLP-GAPGFPGVRGEK-GDQGEKG 825
Query: 894 PHGQPVGGLRFDN-------PRGQPVGGL-----------RFEGGHGPSGAAIRFDGPHG 935
G P GL+ D P G P GL R G GP G G G
Sbjct: 826 ELGLP--GLKGDRGEKGEAGPAGPP--GLPGTTSLFTPHPRMPGEQGPKGEK-GDPGLPG 880
Query: 936 QPG-----GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG--------GNLRF 982
+PG G + +GP G + EG HG A G +G G++
Sbjct: 881 EPGLQGRPGELGPQGPTGPPGAKGQ-EGAHGAPGAAGN-PGAPGHVGAPGPSGPPGSVGA 938
Query: 983 EGPHGQPGV-GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDG 1041
G G PG G R E + G GP G + GP G+G +G LR G
Sbjct: 939 PGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGK---DGEPGLR--G 993
Query: 1042 QPGQPSLLPR-------------------------FDGLHGQPGPRFERTPGQPGPQRFD 1076
PG P L G+ G PG R + G GP
Sbjct: 994 SPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPS 1053
Query: 1077 GPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYN 1136
GPPG + P G+P F GPQ P G G +P +R GP
Sbjct: 1054 GPPGDKGSPGSRGLP-GFPGPQG--------PAGRDGA--PGNPGER---------GPPG 1093
Query: 1137 DPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQ 1196
P ++ +P + + D P GP P PG F + +
Sbjct: 1094 KPGLSSLLSPGD-INLLAKDVCNDCPPGP----PGLPGLPGFKGDKGVPGKPGREGTEGK 1148
Query: 1197 SSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQ-GQQFLPVHPQNPGFVQNPSGAL 1255
+ G G +P P + Q SQ + A G+ GQ+ HP PGF+ P
Sbjct: 1149 KGEAGPPG-LPGPPGIAGPQGSQ------GERGADGEVGQKGDQGHPGVPGFMGPPGNPG 1201
Query: 1256 P 1256
P
Sbjct: 1202 P 1202
Score = 76.6 bits (187), Expect = 2e-13
Identities = 117/399 (29%), Positives = 141/399 (35%), Gaps = 114/399 (28%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P + GPP A + GS G+ G G + +G QG G P F GPPG G P +G
Sbjct: 1155 PGLPGPPGIAGPQ--GSQGERGADGEVGQKGDQGH--PGVP-GFMGPPGNPGPP-GADGI 1208
Query: 838 IGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPH 895
G AG G +GSPG EG PG +GP G P G EG G+P GP
Sbjct: 1209 AGAAGPPGI--QGSPGK--EGPPGP---QGPSGLPGIPGEEGKEGRDGKP-------GPP 1254
Query: 896 GQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMR 955
G+P G+P G GP GA G PG F+G G
Sbjct: 1255 GEP-------GKAGEP-------GLPGPEGA-------RGPPG----FKGHTGDSGA--- 1286
Query: 956 FEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG 1015
GP G+S G + G G PG + G GP+ P
Sbjct: 1287 -PGPRGES--------------GAMGLPGQEGLPG----------KDGD----TGPTGPQ 1317
Query: 1016 GGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRF 1075
G GP G+ G G PG+P G GQ G + E G PG F
Sbjct: 1318 GPQGPRGPPGKNGS----------PGSPGEPGP----SGTPGQKGSKGEN--GSPGLPGF 1361
Query: 1076 DGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPY 1135
GP G +P GVP + P F G G + D
Sbjct: 1362 LGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGD------------------ 1403
Query: 1136 NDPPGNAFNAPSQGLQFQRHEQIFDSPQG-PNFNGPHGP 1173
PPG G+ + PQG P NGP GP
Sbjct: 1404 KGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442
Score = 37.4 bits (85), Expect = 0.11
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 978 GNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH 1035
G + GP G PG P G G + GP G + I GP GQG +G
Sbjct: 484 GEMGVAGPMGLPG-------PKGDIGAIGPVGAPGPKGEKGDVGI-GPFGQGEKGEKG-- 533
Query: 1036 ALRFDGQPGQPSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQVQPRFDGVPQRF 1094
+L G PG+ G+ G+PG E PG+ G + GPPG P G P
Sbjct: 534 SLGLPGPPGRDGS----KGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAP-GL 588
Query: 1095 DGPQHQQASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGP 1134
G + ++ +R G +G R D P + ++ + GP
Sbjct: 589 QGERGEKGTR-----GEKGERGLDGFPGKPGDTGQQGRPGP 624
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 97.4 bits (241), Expect = 9e-20
Identities = 144/439 (32%), Positives = 175/439 (39%), Gaps = 87/439 (19%)
Query: 753 DGPSRPSVA-------RDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLR 805
DG SRP A + G + P + P GP P L+ GQ GG GP
Sbjct: 185 DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPV--GPRGPQGLQ-----GQQGGAGPTG 237
Query: 806 FEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG-LRFEGSPGGLR 864
G G G P+ GP GP G P G G+ G G+PG + F GSPG
Sbjct: 238 PPGEPGDPGPMGPIGSRGPEGPPGKP----GEDGEPGR-----NGNPGEVGFAGSPGARG 288
Query: 865 FEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPS 924
F G G P GL+ GHRG GL EGP G+ VG +G GP+
Sbjct: 289 FPGAPGLP--GLK--GHRGHK--GL--EGPKGE--------------VGAPGSKGEAGPT 326
Query: 925 G--AAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRF 982
G A+ GP G PG R GP Q G R G HG G+ + G L
Sbjct: 327 GPMGAMGPLGPRGMPGERGRL-GP--QGAPGQR--GAHG-------MPGKPGPM-GPLGI 373
Query: 983 EGPHGQPG-VGIRFE-GPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFD 1040
G G PG G++ E GP +G EGP G GP+ G P G A+ D
Sbjct: 374 PGSSGFPGNPGMKGEAGPTGARGP----EGPQGQRGETGPPGPV--GSPGLPG--AIGTD 425
Query: 1041 GQPGQ--PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVP--QRFDG 1096
G PG P+ P G G GP PG PGPQ GP G + QP GVP + G
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAGP-----PGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAG 480
Query: 1097 PQHQQASR-FDIPLGLQGTRFDNHPSQRLESVSFNQTGPYND--PPGNAFNAPSQGLQFQ 1153
P+ + P+G G P R + + GP + PGN S GL
Sbjct: 481 PKGEPGPHGIQGPIGPPGEEGKRGP--RGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGP 538
Query: 1154 RHEQIFDSPQGPNFNGPHG 1172
+ Q P G +GP G
Sbjct: 539 KGAQGERGPVGS--SGPKG 555
Score = 89.7 bits (221), Expect = 2e-17
Identities = 111/324 (34%), Positives = 132/324 (40%), Gaps = 51/324 (15%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P GP P R G+PG+ G G G +G GG P +G PGP GTP GP
Sbjct: 701 PGAVGPLGPRGER--GNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTP-GDTGP 757
Query: 838 IGQAGGGGFR-FEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHG 896
G G G R G+PG + G GG+ +G G +G RG P G L GP G
Sbjct: 758 PGLQGMPGERGIAGTPGPK--GDRGGIGEKGAEGTAGN----DGARGLP-GPLGPPGPAG 810
Query: 897 QPVGGLRFDNPRG--QPVGGLRFEGGHGPSG--AAIRFDGPHGQPG-GGIRFEGPLLQQG 951
P G PRG P G G G +G A+ F GP G G G++ E Q
Sbjct: 811 -PTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQK 869
Query: 952 VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV--GIRFEGPLVQQG--GGMR 1007
GP G L G+ GP+G PG+ G +GP G G
Sbjct: 870 GDAGSPGPQG--------------LAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAG 915
Query: 1008 FEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTP 1067
GP P G GPLG+ G EG LR G PG + G G GP P
Sbjct: 916 RVGPPGPAGAPGPAGPLGEPGK--EGPPGLR--GDPGSHGRV----GDRGPAGP-----P 962
Query: 1068 GQPGPQRFDGPPGQQVQPRFDGVP 1091
G PG + G PG+ QP DG P
Sbjct: 963 GGPGDK---GDPGEDGQPGPDGPP 983
Score = 84.7 bits (208), Expect = 6e-16
Identities = 122/359 (33%), Positives = 141/359 (39%), Gaps = 81/359 (22%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQ 812
GP P+ A GP + E P +GPP LR D GS G++G GP GP G
Sbjct: 918 GPPGPAGA-PGPAGPLGE------PGKEGPP---GLRGDPGSHGRVGDRGPA---GPPGG 964
Query: 813 LGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGPGGQ 871
G +G PGP G P GP G G G G PG R E G PG GP G
Sbjct: 965 PGDKGDPGEDGQPGPDGPP----GPAGTTGQRGI--VGMPGQRGERGMPG---LPGPAGT 1015
Query: 872 P--VGGLRFEGHRGQP--VGGLRFEGPHGQP--VGGLRFDNPRGQP--VGGLRFEGGHGP 923
P VG G +G P VG GP G+P G D G+ VG G GP
Sbjct: 1016 PGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGP 1075
Query: 924 SG-----AAIRFDGPHGQPG-----GGIRFEGPLLQQG-VGMRF----EGPHGQSVAGLR 968
+G A GP G PG G GP+ G G R +GP G
Sbjct: 1076 AGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGD------ 1129
Query: 969 FEGQHNQLG-----GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGP 1023
+G H G G+ F G G PG GP +QG GP P G GP
Sbjct: 1130 -KGDHGDRGDRGQKGHRGFTGLQGLPGP----PGPNGEQGSA-GIPGPFGPRGP---PGP 1180
Query: 1024 LGQGGPRFEGCHALRFDGQPGQ--PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG 1080
+G G +G PG P P G G+ GP E PG+PGP GPPG
Sbjct: 1181 VGPSGK----------EGNPGPLGPIGPPGVRGSVGEAGP--EGPPGEPGPPGPPGPPG 1227
Score = 84.3 bits (207), Expect = 8e-16
Identities = 108/328 (32%), Positives = 126/328 (38%), Gaps = 52/328 (15%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GPP PA G G+ G GP GP G G GP G VG F GP G
Sbjct: 804 GPPGPA-----GPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVG----FAGPQGPD 854
Query: 842 GGGGFRFE-GSPGLRFE-GSPGGLRFEGPGGQ--PVGGLRFEGHRGQ--PVGGLRFEGPH 895
G G + E G PG + + GSPG G G P G +G RG P G F G
Sbjct: 855 GQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSA 914
Query: 896 GQ-----PVGGLRFDNPRGQP----VGGLRFE-GGHGPSGAAIRFDGPHGQPGGGIRFEG 945
G+ P G P G+P GLR + G HG G GP G PGG
Sbjct: 915 GRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDR----GPAGPPGGPGDKGD 970
Query: 946 PLLQQGVGMRFEGPHGQS-VAGLR-FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQ 1001
P G +GP G + G R G Q G G GP G PG V
Sbjct: 971 PGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK--------VG 1020
Query: 1002 QGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGP 1061
G +GP P G GP+G+ GP + DG PG+ + G G PGP
Sbjct: 1021 PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGN----DGTPGRDGAVGE-RGDRGDPGP 1075
Query: 1062 R----FERTPGQPGPQRFDGPPGQQVQP 1085
+ PG PGP G GQ+ P
Sbjct: 1076 AGLPGSQGAPGTPGPVGAPGDAGQRGDP 1103
Score = 80.5 bits (197), Expect = 1e-14
Identities = 123/411 (29%), Positives = 164/411 (39%), Gaps = 76/411 (18%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFR-FEGS 851
G PG G GP+ GP G+ G P G PG VG P GP+G+ G G R F GS
Sbjct: 483 GEPGPHGIQGPI---GPPGEEGKRGP---RGDPGTVGPP----GPVGERGAPGNRGFPGS 532
Query: 852 PGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRG 909
GL PG +G G PVG +G +G P G G G G P G
Sbjct: 533 DGL-----PGPKGAQGERG-PVGSSGPKGSQGDPGRPGEPGLPGARGL-TGNPGVQGPEG 585
Query: 910 Q--PVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGL 967
+ P+G +G GP G+ G GQP G + GP G + V G
Sbjct: 586 KLGPLGAPGEDGRPGPPGSI----GIRGQP-GSMGLPGPKGSSGDPGKPGEAGNAGVPGQ 640
Query: 968 R-FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRFEG----PSVPGGGLR- 1019
R G+ ++G + GP G PG+ G +QG G F+G P PG G +
Sbjct: 641 RGAPGKDGEVGPS----GPVGPPGLA----GERGEQGPPGPTGFQGLPGPPGPPGEGGKP 692
Query: 1020 -------IEGPLGQGGPRFEGCHALRFDGQPGQPSL--LPRFDGL---HGQPGPRFERTP 1067
G +G GPR E + G+ G+P + LP G+ HG GP+ +P
Sbjct: 693 GDQGVPGDPGAVGPLGPRGERGN----PGERGEPGITGLPGEKGMAGGHGPDGPK--GSP 746
Query: 1068 GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDN--------- 1118
G G GPPG Q P G+ GP+ + + G +GT ++
Sbjct: 747 GPSGTPGDTGPPGLQGMPGERGIAGT-PGPKGDRGGIGE--KGAEGTAGNDGARGLPGPL 803
Query: 1119 -HPSQRLESVSFNQTGPYN--DPPGNAFNAPSQGLQFQRHEQIFDSPQGPN 1166
P + + GP PPG+ N S+G F PQGP+
Sbjct: 804 GPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD 854
Score = 80.1 bits (196), Expect = 2e-14
Identities = 140/446 (31%), Positives = 163/446 (36%), Gaps = 86/446 (19%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL 813
GP R P M GP S P P G PGQ G G GP G +
Sbjct: 600 GPPGSIGIRGQPGSMGLPGPKGSS---GDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPV 656
Query: 814 G--GGCPLRFE-GPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGG 870
G G R E GPPGP G GP G G G G PG +G PG PG
Sbjct: 657 GPPGLAGERGEQGPPGPTGFQ-GLPGPPGPPGEG-----GKPG--DQGVPG-----DPGA 703
Query: 871 QPVGGLRFEGHRGQPVGGLRFEGPHGQP-VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIR 929
VG L G RG P G G+P + GL G GGHGP G
Sbjct: 704 --VGPLGPRGERGNP-------GERGEPGITGL---------PGEKGMAGGHGPDGPK-G 744
Query: 930 FDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGP 985
GP G PG G +G ++G+ GP G G+ +G G G GP
Sbjct: 745 SPGPSGTPGDTGPPGLQGMPGERGIA-GTPGPKGDR-GGIGEKGAEGTAGNDGARGLPGP 802
Query: 986 HGQPG----VGIRFE-------GPLVQQGG-GMRFE-GPSVPGGGLRIEGPLGQGGPRFE 1032
G PG G + E GP +G G R E GP+ G +GP GQ G + E
Sbjct: 803 LGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGE 862
Query: 1033 GCHALRFDGQPGQ--PSLLPRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQVQPRFDG 1089
G+PGQ + P GL G PGP PG G + GPPG F G
Sbjct: 863 -------PGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPG---ATGFPG 912
Query: 1090 VPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYN--DPPGNAFNAPS 1147
R P A PLG G + P R + S + G PPG +
Sbjct: 913 SAGRVGPPGPAGAPGPAGPLGEPGK--EGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGD 970
Query: 1148 QGLQFQRHEQIFDSPQGPNFNGPHGP 1173
G D GP +GP GP
Sbjct: 971 PG---------EDGQPGP--DGPPGP 985
Score = 79.7 bits (195), Expect = 2e-14
Identities = 134/449 (29%), Positives = 161/449 (35%), Gaps = 111/449 (24%)
Query: 775 KLSPRID----GPPTPASLRFD----GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPG 826
K PR D GPP P R G PG G GP +G +G +G P +G PG
Sbjct: 502 KRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPG 561
Query: 827 PVGTP-----------LRFEGPIGQAGGGGFRFE-GSPG----LRFEGSPGGLRFEGPGG 870
G P +GP G+ G G E G PG + G PG + GP G
Sbjct: 562 RPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKG 621
Query: 871 Q--------PVGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGG 920
G G RG P G + GP G P GL + P G F+G
Sbjct: 622 SSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPP--GLAGERGEQGPPGPTGFQGL 679
Query: 921 HGPSGAAIRFDGPHGQPG-----GGIRFEGPLLQQGVGMRFEGPHGQ-SVAGLRFEGQHN 974
GP G G G+PG G GPL +G G G+ + GL G+
Sbjct: 680 PGPPGP----PGEGGKPGDQGVPGDPGAVGPLGPRGERGN-PGERGEPGITGL--PGEKG 732
Query: 975 QLGGNLRFEGPHGQPGVG--IRFEGPLVQQG-----GGMRFEGPSVPGGGLRIEGPLGQG 1027
GG+ +GP G PG GP QG G GP GG+ +G G
Sbjct: 733 MAGGH-GPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTA 791
Query: 1028 GPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRF 1087
G DG G P L G G GP E+ G+PGP+ GPPG + P
Sbjct: 792 GN----------DGARGLPGPL----GPPGPAGPTGEK--GEPGPRGLVGPPGSRGNPGS 835
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNA 1145
G +GP A F P G G Q G +P PG +A
Sbjct: 836 RGE----NGP--TGAVGFAGPQGPDG-----------------QPGVKGEPGEPGQKGDA 872
Query: 1146 PSQGLQFQRHEQIFDSPQG-PNFNGPHGP 1173
S G PQG GPHGP
Sbjct: 873 GSPG------------PQGLAGSPGPHGP 889
Score = 76.6 bits (187), Expect = 2e-13
Identities = 135/443 (30%), Positives = 158/443 (35%), Gaps = 103/443 (23%)
Query: 772 GPNKL--SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG 829
GP L SP GP +G PG GG G +GP G G GPPGP G
Sbjct: 876 GPQGLAGSPGPHGP--------NGVPGLKGGRGT---QGPPGATGFPGSAGRVGPPGPAG 924
Query: 830 TPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGPGGQPVGGLRFEGHRGQPVGG 888
P GP G G G EG PGLR + GS G + GP G P G G +G P G
Sbjct: 925 AP----GPAGPLGEPGK--EGPPGLRGDPGSHGRVGDRGPAGPPGG----PGDKGDP-GE 973
Query: 889 LRFEGPHGQP-----------VGGLRFDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHG 935
GP G P VG RG P G G GP+GA G G
Sbjct: 974 DGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGAT----GDKG 1029
Query: 936 QPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG-----GNLRFEGPHGQ 988
PG G GP+ + G EGP G R +G + G G G G
Sbjct: 1030 PPGPVGPPGSNGPVGEPGP----EGPAGNDGTPGR-DGAVGERGDRGDPGPAGLPGSQGA 1084
Query: 989 PGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL 1048
PG GP+ G + P G GP G+ G R G PG
Sbjct: 1085 PGT----PGPVGAPGDAGQRGDPGSRGP----IGPPGRAGKR----------GLPGPQG- 1125
Query: 1049 LPRFD-GLHGQPGPRFERTP-GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFD 1106
PR D G HG G R ++ G G Q GPPG + G+P F GP+
Sbjct: 1126 -PRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPF-GPRGPPG---- 1179
Query: 1107 IPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPN 1166
P+G G + P GP PPG + G + P P
Sbjct: 1180 -PVGPSGKEGNPGP-----------LGPIG-PPGVRGSVGEAGPE--------GPPGEPG 1218
Query: 1167 FNGPHGPGNQSFSNPLNRASGHY 1189
GP GP + L GHY
Sbjct: 1219 PPGPPGPPGH-LTAALGDIMGHY 1240
Score = 50.4 bits (119), Expect = 1e-05
Identities = 48/147 (32%), Positives = 55/147 (37%), Gaps = 23/147 (15%)
Query: 1041 GQPGQPSLLPRFDGLHGQP---------GPRFER----TPGQPGPQRFDGPPGQQVQPRF 1087
GQ G+P L+P G+ G+P GPR ER PG GPQ DG PG QP
Sbjct: 113 GQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGA 172
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPS 1147
G P P H P Q D +S +Q G G
Sbjct: 173 PGPPGH---PSHPGPDGLSRPFSAQMAGLDE------KSGLGSQVGLMPGSVGPVGPRGP 223
Query: 1148 QGLQFQRHEQIFDSPQG-PNFNGPHGP 1173
QGLQ Q+ P G P GP GP
Sbjct: 224 QGLQGQQGGAGPTGPPGEPGDPGPMGP 250
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 97.4 bits (241), Expect = 9e-20
Identities = 122/379 (32%), Positives = 153/379 (40%), Gaps = 72/379 (18%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLG 814
P P V +G T + + P+ P GPP P PG G GP ++G QG++G
Sbjct: 159 PGHPGVLPEGATDL--QCPSICPP---GPPGP--------PGMPGFKGPTGYKGEQGEVG 205
Query: 815 GGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG-LRFEGSPGGLRFEGPGGQPV 873
GPPGP G P G +G G G R G PG L G G + F GP G P
Sbjct: 206 KDGEKGDPGPPGPAGLP----GSVGLQGPRGLR--GLPGPLGPPGDRGPIGFRGPPGIP- 258
Query: 874 GGLRFEGHRGQ--------PVGGLRFEGPHGQP-VGGLRFDNPRGQP----------VGG 914
G G RG+ P G L GP G P V G P G+P V G
Sbjct: 259 GAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAG-----PSGEPGMPGKDGQNGVPG 313
Query: 915 LRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVG--MRFEGPHGQ-------S 963
L + G A GP+G PG G +G ++G + GP G+
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAG 373
Query: 964 VAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRFEGPSVPGGGLRIE 1021
+ G R E H G L +GP G PGV F+G Q+G G GP G +
Sbjct: 374 MPGERGEAGHRGSAGALGPQGPPGAPGVR-GFQG---QKGSMGDPGLPGPQGLRGDVGDR 429
Query: 1022 GPLGQGGPRFEGCHALRFDGQPGQPSLL-------PRFD-GLHGQPGPRFERTP-GQPGP 1072
GP G GP+ + A DG PG L P+ + G G+ GP+ + P G G
Sbjct: 430 GPGGAAGPKGDQGIA-GSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGV 488
Query: 1073 QRFDGPPGQQVQPRFDGVP 1091
Q GPPG GVP
Sbjct: 489 QGVPGPPGPLGLQGVPGVP 507
Score = 89.4 bits (220), Expect = 3e-17
Identities = 128/418 (30%), Positives = 161/418 (38%), Gaps = 74/418 (17%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSP 852
G PG G GP G G G P GPPGP G P G G+ G G G P
Sbjct: 29 GLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAP----GKPGKPGEAG--LPGLP 82
Query: 853 GLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQP-VGGLRFDNPRGQ- 910
G+ +G G GP G P G RG GP G P +GG P G+
Sbjct: 83 GV--DGLTGRDGPPGPKGAP-------GERGS-------LGPPGPPGLGGKGLPGPPGEA 126
Query: 911 ----PVGGLRFEGGHGPSGAAIRFDGPHGQPG----GGIRFEGPLLQQGVGMRFEGPHG- 961
P GG+ G GPSG GP G PG G+ EG Q + GP G
Sbjct: 127 GVSGPPGGIGLRGPPGPSGLP-GLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGP 185
Query: 962 QSVAGLR----FEGQHNQLG-----GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPS 1012
+ G + ++G+ ++G G+ GP G PG + +GP +G GP
Sbjct: 186 PGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPG-SVGLQGPRGLRG----LPGPL 240
Query: 1013 VPGGGLRIEGPLG-QGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
P G GP+G +G P G D P G G+PGP+ TPG G
Sbjct: 241 GPPGD---RGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPK--GTPGVAG 295
Query: 1072 PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDI-----PLGLQG----TRFDNHPSQ 1122
P G PG+ Q +GVP DG Q +A R P GL G +
Sbjct: 296 PSGEPGMPGKDGQ---NGVP-GLDG-QKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGE 350
Query: 1123 RLESVSFNQTGPYNDP--PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSF 1178
R + + GP +P PG+A +G R PQGP P PG + F
Sbjct: 351 RGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGP----PGAPGVRGF 404
Score = 84.3 bits (207), Expect = 8e-16
Identities = 134/429 (31%), Positives = 166/429 (38%), Gaps = 96/429 (22%)
Query: 755 PSRPSV----ARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGP---LRFE 807
P P V RDGP + S GPP G PG+ G GP +
Sbjct: 79 PGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLR 138
Query: 808 GPQGQLG-GGCPLRFEGPPGPVGTP-----------------LRFEGPIGQAGGGGFR-- 847
GP G G G P GPPGP G P + GP G G GF+
Sbjct: 139 GPPGPSGLPGLP----GPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGP 194
Query: 848 --FEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQP--VGGL 902
++G G + +G G GP G P G + +G RG + GL GP G P G +
Sbjct: 195 TGYKGEQGEVGKDGEKGDPGPPGPAGLP-GSVGLQGPRG--LRGL--PGPLGPPGDRGPI 249
Query: 903 RFDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQ-----PGGGIRFEGPLLQQGVGMR 955
F P G P G G GP G F GP G P G GP + G+
Sbjct: 250 GFRGPPGIPGAPGKAGDRGERGPEG----FRGPKGDLGRPGPKGTPGVAGPSGEPGM--- 302
Query: 956 FEGPHGQS-VAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRFEG 1010
G GQ+ V GL +GQ + G G +GP+G PG+ R G ++G G G
Sbjct: 303 -PGKDGQNGVPGL--DGQKGEAGRNGAPGEKGPNGLPGLPGR-AGSKGEKGERGRAGELG 358
Query: 1011 PSVPGGGLRIEGPLGQGGPRFEGCH-----ALRFDGQPGQPSLLPRFDGLHGQPGPRFER 1065
+ P G + G G G R E H AL G PG P + G GQ G +
Sbjct: 359 EAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGV----RGFQGQKGSMGD- 413
Query: 1066 TPGQPGPQ--RFD----------GPPGQQVQPRFDGV--------PQRFDGPQHQQASRF 1105
PG PGPQ R D GP G Q DG+ P GP+ + SR
Sbjct: 414 -PGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRG 472
Query: 1106 DI-PLGLQG 1113
++ P G QG
Sbjct: 473 ELGPKGTQG 481
Score = 84.0 bits (206), Expect = 1e-15
Identities = 131/430 (30%), Positives = 155/430 (36%), Gaps = 114/430 (26%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GPP PA L GS G G G GP G G P+ F GPPG G P + G G+
Sbjct: 214 GPPGPAGL--PGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGK-AGDRGER 270
Query: 842 GGGGFRFE----GSPGLRFEGSPGGLRFEGPGGQP----------VGGLRFEGHRGQPV- 886
G GFR G PG + G+PG GP G+P V GL +G +G+
Sbjct: 271 GPEGFRGPKGDLGRPGPK--GTPG---VAGPSGEPGMPGKDGQNGVPGL--DGQKGEAGR 323
Query: 887 -GGLRFEGPHGQP-----------------VGGLRFDNPRGQP-------VGGLRFEGGH 921
G +GP+G P G L P G+P + G R E GH
Sbjct: 324 NGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGH 383
Query: 922 GPSGAAIRFDGPHGQPG-----------GGIRFEGPL-LQQGVGMR----FEGPHG-QSV 964
S A+ GP G PG G GP L+ VG R GP G Q +
Sbjct: 384 RGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGI 443
Query: 965 AGLR-FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGP 1023
AG G +LG + GP G+ G GP QG VPG GP
Sbjct: 444 AGSDGLPGDKGELGPS-GLVGPKGESGSRGEL-GPKGTQGPNGTSGVQGVPGP----PGP 497
Query: 1024 LG-QGGPRFEGCHALRFDGQPGQPSL---------------------------LPRFDGL 1055
LG QG P G G+PG P P G
Sbjct: 498 LGLQGVPGVPG-----ITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGS 552
Query: 1056 HGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRF--DGPQHQQASRFD---IPLG 1110
G+PGP PG PGP G PG + P + G GP+ Q R D G
Sbjct: 553 IGRPGPA--GPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAG 610
Query: 1111 LQGTRFDNHP 1120
L G D P
Sbjct: 611 LDGPEGDQGP 620
Score = 62.4 bits (150), Expect = 3e-09
Identities = 97/332 (29%), Positives = 118/332 (35%), Gaps = 61/332 (18%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE--- 849
G PG+ G G G G+LG P G PG G P G G G G
Sbjct: 337 GLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGE-RGEAGHRGSAGALGPQGP 395
Query: 850 -GSPGLR-FEGSPGGLRFEG-PGGQPVGGL---RFEGHRGQPVGGLRFEGPHGQP----- 898
G+PG+R F+G G + G PG Q + G R G P G G G P
Sbjct: 396 PGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGE 455
Query: 899 VGGLRFDNPRGQPV--GGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGV---- 952
+G P+G+ G L +G GP+G + G G PG GPL QGV
Sbjct: 456 LGPSGLVGPKGESGSRGELGPKGTQGPNGTS----GVQGVPGP----PGPLGLQGVPGVP 507
Query: 953 ---------GMRFEGPHGQSVAGLRFEGQHNQLGGNLR---FEGPHGQPGVGIRFEGPLV 1000
G + + G Q QL +LR G G+PG GP
Sbjct: 508 GITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPA----GPPG 563
Query: 1001 QQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRF-------EGCHALRFDGQPGQPSLLPR 1051
G G + G P G G LG GPR +G DG G
Sbjct: 564 PPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGP--- 620
Query: 1052 FDGLHGQPGPRFER---TPGQPGPQRFDGPPG 1080
G G PG + PG+PGP G PG
Sbjct: 621 -QGPQGVPGTSKDGQDGAPGEPGPPGDPGLPG 651
Score = 46.6 bits (109), Expect = 2e-04
Identities = 42/125 (33%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 749 RPLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEG 808
+PL G S+ R GP GP GPP P GS G G GP + G
Sbjct: 546 KPLAPG----SIGRPGPA-----GP-------PGPPGPP-----GSIGHPGARGPPGYRG 584
Query: 809 PQGQLGGGCPLRFEGPPGPVGTP-LRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEG 867
P G+LG P +G G G +GP G G G +G PG +G G G
Sbjct: 585 PTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQG--PQGVPGTSKDGQDGAPGEPG 642
Query: 868 PGGQP 872
P G P
Sbjct: 643 PPGDP 647
Score = 45.8 bits (107), Expect = 3e-04
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 768 MIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGP 827
MI E +L+ + P P S+ G G G GP G G G P + GP G
Sbjct: 532 MISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGP---PGSIGHPGARGPPGYRGPTGE 588
Query: 828 VGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVG 887
+G P GP G G G + G+ G +G G +GP G P G +G G P
Sbjct: 589 LGDP----GPRGNQGDRGDK--GAAGAGLDGPEGDQGPQGPQGVP--GTSKDGQDGAP-- 638
Query: 888 GLRFEGPHGQP 898
GP G P
Sbjct: 639 --GEPGPPGDP 647
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 97.1 bits (240), Expect = 1e-19
Identities = 124/561 (22%), Positives = 234/561 (41%), Gaps = 90/561 (16%)
Query: 138 VNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQK- 196
+ SL P + P+P +++ V+ L P P + + I PP++ ++
Sbjct: 117 MTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPN-IATLGEIPQPPLMGNVDPS 175
Query: 197 ------------NLTQEQLIRQQLLAKQKQLLELQQKKLELELEQ----AKAQLAVSLSV 240
NL + QLL KQ+ E++ ++ + Q A + A SV
Sbjct: 176 KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSV 235
Query: 241 QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKG---TNRDP 297
+ + G L ++ VK P P + K ++++ + +P
Sbjct: 236 PRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEP 295
Query: 298 RLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKEL 357
+ ++ G+ +SH + S +++S S + S + +S+S + ++
Sbjct: 296 ESGKSNERKGGRSRSHTR---------SKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQK 346
Query: 358 DQLDSKS----------KSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKH 407
D+ SKS + KS+S S ++K T++ K +E E ++ D K R K+
Sbjct: 347 DRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTRE-KIKEKERVKEKDREKEREREKER 405
Query: 408 LQDKTDGKDDDVKEKRKTAEKKDKD---EHMKSSEHRLAGSRNKIINGIVQKQDTITEES 464
++K GK+ D ++R+ +KDK+ E + EH + K +K+ +E
Sbjct: 406 EKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEK------EKEQDKEKER 459
Query: 465 EKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRS--PKRRQRSMSPTSTPKAGKIR 522
EK +K +K +SR+P P ++ RR R S +RR+RS S + +P+ K
Sbjct: 460 EKDRSKEIDEKRKKDKKSRTP----PRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT- 514
Query: 523 QSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPK 582
K+ +P SR ++ KR ++D RR E ER +T+ + + + K
Sbjct: 515 ---IKRKSSRSPSPRSRNKKDKKREKERDHISERR----ERER---STSMRKSSNDRDGK 564
Query: 583 ENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQH 642
E +E +S K EH+K P S +K + AP+ +++
Sbjct: 565 EKLEKNSTSLKEK----------------EHNKEP------DSSVSKEVDDKDAPRTEEN 602
Query: 643 RLSVDANLQIPKELTLASKRE 663
++ + N Q+ +E L++K E
Sbjct: 603 KIQHNGNCQLNEE-NLSTKTE 622
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 97.1 bits (240), Expect = 1e-19
Identities = 124/561 (22%), Positives = 234/561 (41%), Gaps = 90/561 (16%)
Query: 138 VNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQK- 196
+ SL P + P+P +++ V+ L P P + + I PP++ ++
Sbjct: 1 MTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPN-IATLGEIPQPPLMGNVDPS 59
Query: 197 ------------NLTQEQLIRQQLLAKQKQLLELQQKKLELELEQ----AKAQLAVSLSV 240
NL + QLL KQ+ E++ ++ + Q A + A SV
Sbjct: 60 KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSV 119
Query: 241 QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKG---TNRDP 297
+ + G L ++ VK P P + K ++++ + +P
Sbjct: 120 PRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEP 179
Query: 298 RLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKEL 357
+ ++ G+ +SH + S +++S S + S + +S+S + ++
Sbjct: 180 ESGKSNERKGGRSRSHTR---------SKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQK 230
Query: 358 DQLDSKS----------KSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKH 407
D+ SKS + KS+S S ++K T++ K +E E ++ D K R K+
Sbjct: 231 DRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTRE-KIKEKERVKEKDREKEREREKER 289
Query: 408 LQDKTDGKDDDVKEKRKTAEKKDKD---EHMKSSEHRLAGSRNKIINGIVQKQDTITEES 464
++K GK+ D ++R+ +KDK+ E + EH + K +K+ +E
Sbjct: 290 EKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEK------EKEQDKEKER 343
Query: 465 EKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRS--PKRRQRSMSPTSTPKAGKIR 522
EK +K +K +SR+P P ++ RR R S +RR+RS S + +P+ K
Sbjct: 344 EKDRSKEIDEKRKKDKKSRTP----PRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT- 398
Query: 523 QSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPK 582
K+ +P SR ++ KR ++D RR E ER +T+ + + + K
Sbjct: 399 ---IKRKSSRSPSPRSRNKKDKKREKERDHISERR----ERER---STSMRKSSNDRDGK 448
Query: 583 ENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQH 642
E +E +S K EH+K P S +K + AP+ +++
Sbjct: 449 EKLEKNSTSLKEK----------------EHNKEP------DSSVSKEVDDKDAPRTEEN 486
Query: 643 RLSVDANLQIPKELTLASKRE 663
++ + N Q+ +E L++K E
Sbjct: 487 KIQHNGNCQLNEE-NLSTKTE 506
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 96.7 bits (239), Expect = 2e-19
Identities = 140/413 (33%), Positives = 173/413 (41%), Gaps = 79/413 (19%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P + G P L DG+PG++G GP G G LG P+ + GP G G G
Sbjct: 792 PGVFGERGPPGL--DGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKG----LMGS 845
Query: 838 IGQAGGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHG 896
+G+ G G + E G PG+ G PG +G G P F G RG+P GP G
Sbjct: 846 VGEPGLKGDKGEQGVPGV--SGDPGFQGDKGSQGLP----GFPGARGKP-------GPLG 892
Query: 897 Q--PVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV 952
+ G + F P G P G F G GP G +GP G G G GP Q G
Sbjct: 893 KVGDKGSIGFPGPPG-PEG---FPGDIGPPGD----NGPEGMKGKPGARGLPGPRGQLG- 943
Query: 953 GMRFEGPHGQSVA-GLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE 1009
EGP G A GL EGQ + G G +G G+PG R GP+ +Q G M F
Sbjct: 944 PEGDEGPMGPPGAPGL--EGQPGRKGFPGRPGLDGVKGEPGDPGR-PGPVGEQ-GFMGFI 999
Query: 1010 GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPG-PRFERTPG 1068
G G + +G G GP PG P P+ G G PG P TPG
Sbjct: 1000 GLVGEPGIVGEKGDRGMMGP-------------PGVPG--PK--GSMGHPGMPGGMGTPG 1042
Query: 1069 QPGPQRFDGPPGQQVQPRFDGV-----PQRFDGPQHQQASR-FDIPLGLQGTRFDNHPSQ 1122
+PGPQ GPPG + P G P+ DGP +Q SR P G QG P Q
Sbjct: 1043 EPGPQ---GPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGR--PGRPGQ 1097
Query: 1123 RLESVSFNQTGPYNDP--PGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGP 1173
+ + G P PG + ++GL + PQGP GP GP
Sbjct: 1098 QGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGE------PGPQGP--QGPIGP 1142
Score = 91.7 bits (226), Expect = 5e-18
Identities = 133/389 (34%), Positives = 160/389 (41%), Gaps = 71/389 (18%)
Query: 777 SPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLR--F 834
+P GP P R G PG G G GP G G +GPPGP G P R
Sbjct: 1040 TPGEPGPQGPPGSR--GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQ 1097
Query: 835 EGPIGQAGGGGFR-FEGSPGLR----FEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VG 887
+G G+ G G R F G PG +G PG +GP G P+G G +G P VG
Sbjct: 1098 QGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQG-PIGPPGEMGPKGPPGAVG 1156
Query: 888 --GLRFE-------GPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGA-AIRFD------ 931
GL E GP G P G RG+P GL EG GP G ++ D
Sbjct: 1157 EPGLPGEAGMKGDLGPLGTP-GEQGLIGQRGEP--GL--EGDSGPMGPDGLKGDRGDPGP 1211
Query: 932 -GPHGQPG--GGIRFEGPLLQQGV-GMRFEGPHGQS--------VAGLRFEGQHNQLG-- 977
G HG+ G G + +GP GV G+R GP G+S +G QLG
Sbjct: 1212 DGEHGEKGQEGLMGEDGPPGPPGVTGVR--GPEGKSGKQGEKGRTGAKGAKGYQGQLGEM 1269
Query: 978 GNLRFEGPHGQPGV-GIRFEGPLVQQGGGMRFEGPSVPG-----GGLRIEGPLGQGGPRF 1031
G GP G PG G R G L G R PG G I GPLG GP+
Sbjct: 1270 GVPGDPGPPGTPGPKGSR--GSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKG 1327
Query: 1032 EGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERT-------PGQPGPQRFDGPPGQQVQ 1084
E G+ G+ P G G G R +R PGQ G Q G PGQQ Q
Sbjct: 1328 EKGE----QGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQ 1383
Query: 1085 PRFDGVPQRFDGPQHQQASRFDIPLGLQG 1113
P G P+ + GP+ + + + P G QG
Sbjct: 1384 PGHPG-PRGWPGPKGSKGA--EGPKGKQG 1409
Score = 87.8 bits (216), Expect = 7e-17
Identities = 113/329 (34%), Positives = 129/329 (39%), Gaps = 44/329 (13%)
Query: 778 PRIDGPP----TPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLR 833
P + G P S G PG G GPL G +G +G F GPPGP G
Sbjct: 861 PGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIG------FPGPPGPEG---- 910
Query: 834 FEGPIGQAGGGGFR-FEGSPGLRFEGSPGGLRFEGPGGQ--PVGGLRFEGHRGQPVGGLR 890
F G IG G G +G PG R G PG GP G P+G G GQP G
Sbjct: 911 FPGDIGPPGDNGPEGMKGKPGAR--GLPGPRGQLGPEGDEGPMGPPGAPGLEGQP-GRKG 967
Query: 891 FEGPHG-QPVGGLRFDNPRGQPVGGLRFEGGHG----PSGAAIRFD----GPHGQPGGGI 941
F G G V G D R PVG F G G P + D GP G PG
Sbjct: 968 FPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKG 1027
Query: 942 RFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQ 1001
P + G+G E P Q G R G G R GP G +GP +
Sbjct: 1028 SMGHPGMPGGMGTPGE-PGPQGPPGSR--GPPGMRGAKGR-RGPRGP-------DGPAGE 1076
Query: 1002 QGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGP 1061
Q G +GP P G G G G R + F G PG PS P GL G+PGP
Sbjct: 1077 Q-GSRGLKGPPGPQGRPGRPGQQGVAGERGH-LGSRGFPGIPG-PSGPPGTKGLPGEPGP 1133
Query: 1062 RFERTP-GQPGPQRFDGPPGQQVQPRFDG 1089
+ + P G PG GPPG +P G
Sbjct: 1134 QGPQGPIGPPGEMGPKGPPGAVGEPGLPG 1162
Score = 81.6 bits (200), Expect = 5e-15
Identities = 112/355 (31%), Positives = 137/355 (38%), Gaps = 83/355 (23%)
Query: 777 SPRIDGPPTPASLR----------FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPG 826
+P + GPP + DG+ G MG G GP G+ G +G PG
Sbjct: 662 NPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKG------HKGYPG 715
Query: 827 PVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP- 885
P G P G GQ G EGSPG + G PG GP G P G G+ G P
Sbjct: 716 PAGHP----GEQGQPGP-----EGSPGAK--GYPGRQGLPGPVGDP-GPKGSRGYIGLPG 763
Query: 886 -VGGLRFEGPHGQP-VGGLRFDNPRGQPVGGLRFEGGHGPSG-----AAIRFDGPHGQPG 938
G +G G P V G R G P G G GP G + GP G PG
Sbjct: 764 LFGLPGSDGERGLPGVPGKR--GKMGMP-GFPGVFGERGPPGLDGNPGELGLPGPPGVPG 820
Query: 939 --GGIRFEGPLLQQGVGMRFEGPHGQ-----SVAGLRFEGQHNQLG-----GNLRFEGPH 986
G + GP+ + GP G SV +G + G G+ F+G
Sbjct: 821 LIGDLGVLGPI-------GYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDK 873
Query: 987 GQPGV----GIRFE-GPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRF 1039
G G+ G R + GPL + G G + F GP P G GP G GP
Sbjct: 874 GSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGP---------- 923
Query: 1040 DGQPGQPSLLPRFDGLHGQPGPRFERTP-GQPGPQRFDGPPGQQVQPRFDGVPQR 1093
+G G+P G G PGPR + P G GP G PG + QP G P R
Sbjct: 924 EGMKGKP-------GARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGR 971
Score = 80.5 bits (197), Expect = 1e-14
Identities = 118/377 (31%), Positives = 141/377 (37%), Gaps = 71/377 (18%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGP 809
PL + S+ GP GP I P G PG G GP
Sbjct: 890 PLGKVGDKGSIGFPGPP-----GPEGFPGDIGPPGDNGPEGMKGKPGARG------LPGP 938
Query: 810 QGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGL-RFEGSPGGLRFEGP 868
+GQLG P EGP GP G P G GQ G G F G PGL +G PG GP
Sbjct: 939 RGQLG---PEGDEGPMGPPGAP----GLEGQPGRKG--FPGRPGLDGVKGEPGDPGRPGP 989
Query: 869 GGQPVGGLRFEGHRGQP-----VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGP 923
G+ G + F G G+P G GP G P +P G P GG+ G GP
Sbjct: 990 VGEQ-GFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHP-GMP-GGMGTPGEPGP 1046
Query: 924 SGAAIRFDGPHGQPG--------GGIRFEGPLLQQGVGMRFEGPHG----------QSVA 965
G G G PG G +GP +QG +GP G Q VA
Sbjct: 1047 QGP----PGSRGPPGMRGAKGRRGPRGPDGPAGEQG-SRGLKGPPGPQGRPGRPGQQGVA 1101
Query: 966 GLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
G E H G GP G PG L + G +GP P G + +GP G
Sbjct: 1102 G---ERGHLGSRGFPGIPGPSGPPGT-----KGLPGEPGPQGPQGPIGPPGEMGPKGPPG 1153
Query: 1026 Q-GGPRFEGCHALRFD----GQPGQPSLL-----PRFDGLHGQPGP-RFERTPGQPGPQR 1074
G P G ++ D G PG+ L+ P +G G GP + G PGP
Sbjct: 1154 AVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDG 1213
Query: 1075 FDGPPGQQVQPRFDGVP 1091
G GQ+ DG P
Sbjct: 1214 EHGEKGQEGLMGEDGPP 1230
Score = 79.3 bits (194), Expect = 3e-14
Identities = 134/466 (28%), Positives = 168/466 (36%), Gaps = 116/466 (24%)
Query: 721 SDKPFVDSPASRFAGLDTNQRLTA------LAEDRPLFDGPSRPSVARD----------- 763
S KP + S AS+ AG ++ R A D PL D +RPS +
Sbjct: 533 SKKP-IGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALV 591
Query: 764 -GPTKMIFEGPNKLS--------------PRIDGPPTP-ASLRFDGSPGQMGGGGPLRFE 807
P + + P S P + GPP P G PG G G
Sbjct: 592 LAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGAR 651
Query: 808 GPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEG 867
GP+G G P G PGP G GQ G G SPG +G+ G + G
Sbjct: 652 GPRGPPG---PYGNPGLPGPPGAK-------GQKGDPGL----SPGKAHDGAKGDMGLPG 697
Query: 868 PGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAA 927
G P G +GH+G P G G GQP P G P G + G G
Sbjct: 698 LSGNP-GPPGRKGHKGYP-GPAGHPGEQGQP-------GPEGSP-GAKGYPGRQG----- 742
Query: 928 IRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGL-RFEGQHNQLGGNLRFEGPH 986
GP G PG +G G+ F P GL G+ ++ G
Sbjct: 743 --LPGPVGDPGP----KGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKM-------GMP 789
Query: 987 GQPGV-GIRFEGPLVQQGGGMRFEG-PSVPG--GGLRIEGPLGQGGPR-------FEGCH 1035
G PGV G R L G + G P VPG G L + GP+G GP+ G
Sbjct: 790 GFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEP 849
Query: 1036 ALRFD-GQPGQPSL--------------LPRFDGLHGQPGPRFE-------RTPGQPGPQ 1073
L+ D G+ G P + LP F G G+PGP + PG PGP+
Sbjct: 850 GLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPE 909
Query: 1074 RFD---GPPGQQVQPRFDGVP--QRFDGPQHQQASRFDI-PLGLQG 1113
F GPPG G P + GP+ Q D P+G G
Sbjct: 910 GFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPG 955
Score = 76.6 bits (187), Expect = 2e-13
Identities = 123/375 (32%), Positives = 145/375 (38%), Gaps = 84/375 (22%)
Query: 772 GPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLG-GGCPLRFEGPPGPVGT 830
GP R+ P +DG G +G GP GP+G+ G G + EGPPGP G
Sbjct: 1291 GPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGP---PGPKGEKGEQGEDGKAEGPPGPPGD 1347
Query: 831 PLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFE-GPGGQPVGGLRFEGHRGQ----- 884
GP+G G G G PG + GLR + G GQP GH G
Sbjct: 1348 ----RGPVGDRGDRG--EPGDPGYPGQEGVQGLRGKPGQQGQP-------GHPGPRGWPG 1394
Query: 885 PVGGLRFEGPHGQP----------VGGLR-FDNPRGQPVGGLRFEGGHGPSGAAIRFDGP 933
P G EGP G+ V GL+ PRG VG EG GP G R DG
Sbjct: 1395 PKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRG-VVGRQGLEGIAGPDGLPGR-DGQ 1452
Query: 934 HGQPG-----GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFE-GQHNQLG---------- 977
GQ G G GP ++G P Q G + E G QLG
Sbjct: 1453 AGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Query: 978 ----GNLRFEGPHGQPGVG--IRFEGPLVQQG-----GGMRFEGPSVPGG--GLR----I 1020
GN G GQPG + F G G G + F+G P G GL I
Sbjct: 1513 TGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGI 1572
Query: 1021 EGPLGQGGPRFEGCHALRFD-GQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPP 1079
GPLG GP G + D G G L G G PGPR G+PGP GPP
Sbjct: 1573 VGPLGILGP--SGLPGPKGDKGSRGDWGL----QGPRGPPGPR-----GRPGP---PGPP 1618
Query: 1080 GQQVQPRFDGVPQRF 1094
G +Q + D + F
Sbjct: 1619 GGPIQLQQDDLGAAF 1633
Score = 55.8 bits (133), Expect = 3e-07
Identities = 65/197 (32%), Positives = 76/197 (38%), Gaps = 37/197 (18%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-G 850
DG PG+ G G +G G G P G PG G P +GP G G G + G
Sbjct: 1444 DGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLP-GAQGPPGFKGESGLPGQLG 1502
Query: 851 SPGLR----FEGSPGGLRFEGPGGQP--VGGLRFEGHRG-----QPVGGLRF---EGPHG 896
PG R G PG G GQP G + F G G P G + F +GP G
Sbjct: 1503 PPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRG 1562
Query: 897 QP--------VGGLRFDNPRGQP--------VGGLRFEGGHGPSGAAIRFDGPHGQPGGG 940
P VG L P G P G +G GP G R GP G PGG
Sbjct: 1563 PPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGR-PGPPGPPGGP 1621
Query: 941 IRFEGPLLQQGVGMRFE 957
I+ L Q +G F+
Sbjct: 1622 IQ----LQQDDLGAAFQ 1634
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 95.5 bits (236), Expect = 4e-19
Identities = 140/484 (28%), Positives = 178/484 (36%), Gaps = 122/484 (25%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRID--------------------GPPTPASLRFDGS 794
P P + PT GP SP+ D GPP P G+
Sbjct: 135 PGPPGICESCPT-----GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGP--PGT 187
Query: 795 PGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGL 854
G G G ++GP G+ G P GPPG +G GP G+ G G G PG
Sbjct: 188 SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGP----SGPAGKDGESG--RPGRPGE 241
Query: 855 RFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQP----VGGLRFDN---- 906
R G PG +GP G P G +GHRG F+G +G+ GL+ +N
Sbjct: 242 R--GLPGPPGIKGPAGIP-GFPGMKGHRG-------FDGRNGEKGETGAPGLKGENGLPG 291
Query: 907 ---------PRGQP----VGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQG 951
PRG P GL G + A DG G PG G F G +G
Sbjct: 292 ENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKG 351
Query: 952 VGMRFEGPHGQSVAGLRFEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE 1009
GP G S GQ + G G+ +GP G PG+ GG
Sbjct: 352 E----VGPAG-SPGSNGAPGQRGEPGPQGHAGAQGPPGPPGIN--------GSPGGKGEM 398
Query: 1010 GPS-VPG--GGLRIEGPLGQGGPRFEGCHALRFD-GQPGQPSLLPRFDGLHGQPGPRFER 1065
GP+ +PG G + GP G G G LR G+PG+ +G G+PGPR ER
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGA--NGAPGLRGGAGEPGK-------NGAKGEPGPRGER 449
Query: 1066 ----TPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPS 1121
PG PG + DG G +P +G+P + A F P G G P
Sbjct: 450 GEAGIPGVPGAKGEDGKDGSPGEPGANGLP---GAAGERGAPGFRGPAGPNGI-----PG 501
Query: 1122 QRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNG----PHGPGNQS 1177
++ + GP P G A G+ P GP G P GPG+
Sbjct: 502 EKGPAGERGAPGPAG-PRGAAGEPGRDGV-----------PGGPGMRGMPGSPGGPGSDG 549
Query: 1178 FSNP 1181
P
Sbjct: 550 KPGP 553
Score = 94.7 bits (234), Expect = 6e-19
Identities = 143/450 (31%), Positives = 164/450 (36%), Gaps = 112/450 (24%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGG-GGPLRFEGPQGQ 812
GP PS R P M F GP DG P G G+ GG GGP GPQG
Sbjct: 564 GPPGPSGPRGQPGVMGFPGPKGN----DGAP--------GKNGERGGPGGP----GPQGP 607
Query: 813 LGGGCPLRFEGPPGPVGT--------PLRFEGPIGQAGGGGFRFE----GSPGLRFE-GS 859
G +GPPGP G P +G G G GG E G PG + + G+
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 860 PGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEG 919
PG +G G P G RG P G G P GLR P GG G
Sbjct: 668 PGAPGGKGDAGAP-------GERGPP-------GLAGAP--GLRGGAGPPGPEGGKGAAG 711
Query: 920 GHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLG 977
GP GAA G G PG GG+ GP +G GP V G
Sbjct: 712 PPGPPGAA-GTPGLQGMPGERGGLGSPGPKGDKG---EPGGPGADGVPGK---------- 757
Query: 978 GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHAL 1037
+GP G G I GP Q G P +PG I GP G G R E
Sbjct: 758 -----DGPRGPTG-PIGPPGPAGQPGDKGEGGAPGLPG----IAGPRGSPGERGE----- 802
Query: 1038 RFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGP 1097
G PG P+ P G +G+PG + ER G PG + GPPG P G P GP
Sbjct: 803 --TGPPG-PAGFPGAPGQNGEPGGKGER--GAPGEKGEGGPPGVAGPPGGSG-PAGPPGP 856
Query: 1098 QHQQASR----------FDIPLGLQGTRFDN-HPSQRLESVSFNQTGPYNDPPGNAFNAP 1146
Q + R F GL G N +P S S + G PPG A N
Sbjct: 857 QGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDG----PPGPAGNT- 911
Query: 1147 SQGLQFQRHEQIFDSPQGPNFNGPHGPGNQ 1176
+P P +GP G Q
Sbjct: 912 -------------GAPGSPGVSGPKGDAGQ 928
Score = 92.8 bits (229), Expect = 2e-18
Identities = 132/422 (31%), Positives = 156/422 (36%), Gaps = 73/422 (17%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P DG P P GS G+ G GP GP+GQ G + F GP G G P G
Sbjct: 545 PGSDGKPGPP-----GSQGESGRPGPPGPSGPRGQPG---VMGFPGPKGNDGAP----GK 592
Query: 838 IGQAGG-GGFRFEGSPGLRFEGSPGGLRF-EGPGGQ--PVGGLRFEGHRGQPVGGLRFEG 893
G+ GG GG +G PG E P G GPGG G +G +G P G G
Sbjct: 593 NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG----G 648
Query: 894 PHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--------GGIRFEG 945
P G+ G P+G G GG G +GA G G PG GG G
Sbjct: 649 PPGEN-GKPGEPGPKGD-AGAPGAPGGKGDAGA----PGERGPPGLAGAPGLRGGAGPPG 702
Query: 946 PLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGG 1005
P +G P GL +G + GG L GP G G GP G
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGL--QGMPGERGG-LGSPGPKGDKG---EPGGPGADGVPG 756
Query: 1006 MRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER 1065
+GP P G + GP GQ G + EG G PG LP G G PG R E
Sbjct: 757 K--DGPRGPTGPIGPPGPAGQPGDKGEG-------GAPG----LPGIAGPRGSPGERGE- 802
Query: 1066 TPGQPGPQRFDGPPGQQVQP-----------RFDGVPQRFDGPQHQQASRFDIPLGLQGT 1114
G PGP F G PGQ +P + +G P GP P G QG
Sbjct: 803 -TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG--PPGPQGV 859
Query: 1115 RFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP--NFNGPHG 1172
+ + + F PPG+ N G + D P GP N P
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK---DGPPGPAGNTGAPGS 916
Query: 1173 PG 1174
PG
Sbjct: 917 PG 918
Score = 90.5 bits (223), Expect = 1e-17
Identities = 109/324 (33%), Positives = 125/324 (38%), Gaps = 71/324 (21%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GPP PA G PG G GG G G G GPPGP G P G G+
Sbjct: 768 GPPGPA-----GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFP-GAPGQNGEP 821
Query: 842 GGGGFRFEGSPGLRFEGSPGGLRF----EGPGGQPVGGLRFEGHRGQP--VGGLRFEGPH 895
GG G R G+PG + EG P G+ GP G P G +G RG P G F G
Sbjct: 822 GGKGER--GAPGEKGEGGPPGVAGPPGGSGPAGPP-GPQGVKGERGSPGGPGAAGFPGAR 878
Query: 896 GQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMR 955
G P P G G GPSG+ + DGP G P G G GV
Sbjct: 879 GLP-----------GPPGSNGNPGPPGPSGSPGK-DGPPG-PAGNTGAPG---SPGVS-- 920
Query: 956 FEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG--GGMRFEGPSV 1013
GP G + GQ + G G G PG GPL G G GP
Sbjct: 921 --GPKGDA-------GQPGEKGS----PGAQGPPGA----PGPLGIAGITGARGLAGP-- 961
Query: 1014 PGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQ 1073
PG + GP G GP+ + G+PG L G G PGP+ G PG
Sbjct: 962 PG----MPGPRGSPGPQGVKGES----GKPGANGL----SGERGPPGPQ-----GLPGLA 1004
Query: 1074 RFDGPPGQQVQPRFDGVPQRFDGP 1097
G PG+ P DG+P R P
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSP 1028
Score = 86.3 bits (212), Expect = 2e-16
Identities = 138/468 (29%), Positives = 162/468 (34%), Gaps = 98/468 (20%)
Query: 754 GPSRPSVARDGPTKMIF-EGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQ 812
GPS P GP I GP P P G PG G G F G +G
Sbjct: 210 GPSGPP----GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGH 265
Query: 813 LG-----------GGCPLRFE----------GPPGPVGTPLR-----FEGPIGQAGGGGF 846
G G L+ E GP GP G P G G G G
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGA 325
Query: 847 R-FEGSPG-------LRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQ--PVGGLRFEGPHG 896
R +G PG F GSPG GP G P G G RG+ P G +GP G
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP-GSNGAPGQRGEPGPQGHAGAQGPPG 384
Query: 897 QP-----VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQ 949
P GG P G P G G GP G A G +G PG GG G
Sbjct: 385 PPGINGSPGGKGEMGPAGIP-GAPGLMGARGPPGPA----GANGAPGLRGGAGEPGKNGA 439
Query: 950 QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFEGPLVQQGGGMRF 1008
+G GP G+ R E + G +G G PG G + G F
Sbjct: 440 KGE----PGPRGE-----RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGF 490
Query: 1009 EGPSVPGGGLRIEGPLGQ-GGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTP 1067
GP+ P G +GP G+ G P G G+PG+ +P G+ G PG +P
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAPGPAGPRGAA--GEPGRDG-VPGGPGMRGMPG-----SP 542
Query: 1068 GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNHPSQRLES 1126
G PG GPPG Q + G P GP+ Q +G G + D P + E
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGP-SGPRGQPG-----VMGFPGPKGNDGAPGKNGER 596
Query: 1127 VSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPG 1174
GP P N PQGP GP GPG
Sbjct: 597 GGPGGPGPQGPPGKNGET----------------GPQGP--PGPTGPG 626
Score = 85.5 bits (210), Expect = 4e-16
Identities = 113/359 (31%), Positives = 126/359 (35%), Gaps = 100/359 (27%)
Query: 753 DGPSRPSVARDGPTKMIFEGPN--------KLSPRIDGPP-TPASLRFDGSPGQMGGGGP 803
DGP P+ P GP K SP GPP P L G G G GP
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 804 LRFEGPQGQLG-----------GGCPLRFE-GPPGPVGTPLRFEGPIGQAG-GGGFRFEG 850
GP+G G G L E GPPGP G P G G+ G G +G
Sbjct: 962 PGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLP-GLAGTAGEPGRDGNPGSDG 1020
Query: 851 SPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQ 910
PG +GSPGG G G P G GH G P
Sbjct: 1021 LPGR--DGSPGGKGDRGENGSP-GAPGAPGHPGPP------------------------G 1053
Query: 911 PVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLR 968
PVG G G SG A GP G PG G GP +GP G G
Sbjct: 1054 PVGPAGKSGDRGESGPA----GPAGAPGPAGSRGAPGP----------QGPRGDK--GET 1097
Query: 969 FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG 1028
E + G+ F G G PG GP QQ G + GP+ P GP+G G
Sbjct: 1098 GERGAAGIKGHRGFPGNPGAPG----SPGPAGQQ-GAIGSPGPAGP------RGPVGPSG 1146
Query: 1029 PRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFER-------TPGQPGPQRFDGPPG 1080
P + DG G P G G PGPR R +PG PG GPPG
Sbjct: 1147 PPGK-------DGTSGHP-------GPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPG 1191
Score = 82.8 bits (203), Expect = 2e-15
Identities = 134/439 (30%), Positives = 160/439 (36%), Gaps = 88/439 (20%)
Query: 782 GPPTPASLRFDGSPG---QMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT--PLRFEG 836
GPP P + +GSPG +M GP G G +G GPPGP G G
Sbjct: 381 GPPGPPGI--NGSPGGKGEM---GPAGIPGAPGLMGA------RGPPGPAGANGAPGLRG 429
Query: 837 PIGQAGGGGFRFEGSPGLRFE-------GSPGGLRFEGPGGQP----VGGL-RFEGHRGQ 884
G+ G G + G PG R E G PG +G G P GL G RG
Sbjct: 430 GAGEPGKNGAK--GEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 885 PVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGG-GIRF 943
P F GP G P G +G P G G GP GAA G G PGG G+R
Sbjct: 488 P----GFRGPAG-PNG---IPGEKG-PAGERGAPGPAGPRGAAGE-PGRDGVPGGPGMR- 536
Query: 944 EGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQG 1003
G+ GP G + G GP GQPGV + F GP G
Sbjct: 537 -------GMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGV-MGFPGPKGNDG 588
Query: 1004 --------GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLL------ 1049
GG GP P G GP G GP G G PG L
Sbjct: 589 APGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDK-GDTGPPGPQGLQGLPGTG 647
Query: 1050 --PRFDGLHGQPGPRFER-TPGQPGPQRFDGPPGQQVQPRFDGVP--QRFDGPQHQQASR 1104
P +G G+PGP+ + PG PG + G PG++ P G P + GP + +
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707
Query: 1105 FDI----PLGLQGT-RFDNHPSQRLESVSFNQTGPYNDPPG-NAFNAPSQGLQFQRHEQI 1158
P G GT P +R S G +P G A P +
Sbjct: 708 GAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK---------- 757
Query: 1159 FDSPQGPNFN-GPHGPGNQ 1176
D P+GP GP GP Q
Sbjct: 758 -DGPRGPTGPIGPPGPAGQ 775
Score = 71.2 bits (173), Expect = 7e-12
Identities = 98/331 (29%), Positives = 125/331 (37%), Gaps = 71/331 (21%)
Query: 795 PGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIG-----QAGGGGF--- 846
P G GP GP G G G PG G+P GP G G +
Sbjct: 99 PNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSP----GPPGICESCPTGPQNYSPQ 154
Query: 847 --RFEGSPGLRFEGSPGGLRFEGPGGQ--PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGL 902
++ G+ G G + GP G P G GH G P G ++GP G+P G
Sbjct: 155 YDSYDVKSGVAVGGLAG---YPGPAGPPGPPGPPGTSGHPGSP-GSPGYQGPPGEP-GQA 209
Query: 903 RFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPH 960
P G P G GPSG A + DG G+PG G GP G+ +GP
Sbjct: 210 GPSGPPGPP-------GAIGPSGPAGK-DGESGRPGRPGERGLPGP---PGI----KGPA 254
Query: 961 G-QSVAGLR----FEGQHNQLG--GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSV 1013
G G++ F+G++ + G G +G +G PG GP+ +G P +
Sbjct: 255 GIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN-GAPGPMGPRGAPGERGRPGL 313
Query: 1014 PGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTP------ 1067
PG G G G R DGQPG P P G G PG + E P
Sbjct: 314 PGAA----GARGNDGARGS-------DGQPGPPG-PPGTAGFPGSPGAKGEVGPAGSPGS 361
Query: 1068 -------GQPGPQRFDGPPGQQVQPRFDGVP 1091
G+PGPQ G G P +G P
Sbjct: 362 NGAPGQRGEPGPQGHAGAQGPPGPPGINGSP 392
Score = 35.8 bits (81), Expect = 0.33
Identities = 47/172 (27%), Positives = 59/172 (34%), Gaps = 53/172 (30%)
Query: 1011 PSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQP 1070
P+ P G +GP G GP PG P G +G PG PGQP
Sbjct: 95 PTRPPNGQGPQGPKGDPGP-------------PGIP-------GRNGDPG-----IPGQP 129
Query: 1071 GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN 1130
G GPPG + PQ + PQ+ +D+ G+ +P
Sbjct: 130 GSPGSPGPPG--ICESCPTGPQNY-SPQYDS---YDVKSGVAVGGLAGYP---------G 174
Query: 1131 QTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHG-PGNQSFSNP 1181
GP PPG + G SP P + GP G PG S P
Sbjct: 175 PAGP-PGPPGPPGTSGHPG-----------SPGSPGYQGPPGEPGQAGPSGP 214
Score = 35.4 bits (80), Expect = 0.43
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 3/120 (2%)
Query: 737 DTNQRLTALAEDRPLFDG-PSRPSVARDGPTKMIFEGPNKLSPRIDGPPT--PASLRFDG 793
+T +R A + F G P P + P PR P+ P G
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSG 1155
Query: 794 SPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG 853
PG +G GP G +G G GPPGP G P G +G A G E + G
Sbjct: 1156 HPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 95.1 bits (235), Expect = 5e-19
Identities = 114/340 (33%), Positives = 139/340 (40%), Gaps = 65/340 (19%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE-G 850
+G PG+ G GP +GPQG G P G PG G P GP G G G + E G
Sbjct: 749 EGLPGKDGDTGPTGPQGPQGPRG---PPGKNGSPGSPGEP----GPSGTPGQKGSKGENG 801
Query: 851 SPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNP- 907
SPGL PG L GP G+P G EG G+P G F+G G P G++ D
Sbjct: 802 SPGL-----PGFLGPRGPPGEPGEKGVPGKEGVPGKP-GEPGFKGERGDP--GIKGDKGP 853
Query: 908 ---RGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV-GMRFEGPHG 961
+GQP G G G +G GP G PG G + GP Q G G+R E P
Sbjct: 854 PGGKGQP-GDPGIPGHKGHTGLM----GPQGLPGENGPVGPPGPPGQPGFPGLRGESPSM 908
Query: 962 QSVAGLRFEGQHNQLGGNLRF----------------EGPHGQPGVGIRFEGPLVQQGGG 1005
+++ L E QL L + GP G PG + L + G
Sbjct: 909 ETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPG-----KDGLPGRAGP 963
Query: 1006 MRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL-------LPRFDGLHGQ 1058
M G GG +EGP G GP+ E G PG P + P G G+
Sbjct: 964 MGEPGRPGQGG---LEGPSGPIGPKGER----GAKGDPGAPGVGLRGEMGPPGIPGQPGE 1016
Query: 1059 PGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
PG + PG PGPQ GP G P G P + D Q
Sbjct: 1017 PGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQ 1056
Score = 89.0 bits (219), Expect = 3e-17
Identities = 113/336 (33%), Positives = 138/336 (41%), Gaps = 63/336 (18%)
Query: 793 GSPGQMGGGGPLRF---EGPQGQLGGGCPLRFEGPPGPVGTPLR--------FEGPIGQA 841
G+PG G G + EG G+ G P +GP GP G P + GP G
Sbjct: 732 GAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTP 791
Query: 842 GGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQP--VGGLRFEGHRGQPVGGLRFEGPHGQP 898
G G + E GSPGL PG L GP G+P G EG G+P G F+G G P
Sbjct: 792 GQKGSKGENGSPGL-----PGFLGPRGPPGEPGEKGVPGKEGVPGKP-GEPGFKGERGDP 845
Query: 899 VGGLRFD----NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGV 952
G++ D +GQP G G G +G GP G PG G + GP Q G
Sbjct: 846 --GIKGDKGPPGGKGQP-GDPGIPGHKGHTGLM----GPQGLPGENGPVGPPGPPGQPGF 898
Query: 953 -GMRFEGPHGQSVAGLRFEGQHNQLGGNLRF-------------------EGPHGQPGVG 992
G+R E P +++ L E QL L + GP G+ G+
Sbjct: 899 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 958
Query: 993 IRFEGPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALR----FDGQPGQP 1046
R GP+ + G G EGPS P G G G G G GQPG+P
Sbjct: 959 GR-AGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP 1017
Query: 1047 SLLPRFDGLHGQPGPRFERTP-GQPGPQRFDGPPGQ 1081
DGL G PGP+ E P G PG GPPGQ
Sbjct: 1018 GYAK--DGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1051
Score = 84.7 bits (208), Expect = 6e-16
Identities = 125/426 (29%), Positives = 161/426 (37%), Gaps = 74/426 (17%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGG----------GCPLRF-----EGPPGP 827
P P G PG++G GP G +GQ G G P GPPG
Sbjct: 358 PGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGS 417
Query: 828 VGTP-LRF----EGPIGQAGGGGFRFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGH 881
VG P LR +G G+ G G EGSPG + G PG GP G+ G G
Sbjct: 418 VGAPGLRGTPGKDGERGEKGAAGE--EGSPGPVGPRGDPGAPGLPGPPGKGKDGE--PGL 473
Query: 882 RGQP--VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG- 938
RG P G L +G G P G RG P G+ G GPSG G G PG
Sbjct: 474 RGSPGLPGPLGTKGDRGAP-GIPGSPGSRGDP--GIGVAGPPGPSGPP----GDKGSPGS 526
Query: 939 -GGIRFEGPLLQQGVGMRFEGPHGQS-VAGLRFEGQHNQLGGNLRFEGPHGQPGV----G 992
G F GP +GP G+ ++ L G N L ++ + P G PG+ G
Sbjct: 527 RGLPGFPGP----------QGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPG 576
Query: 993 IRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRF 1052
+ + + + G EG G + GP G GP+ G G+
Sbjct: 577 FKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQ----------GSQGERGA---- 622
Query: 1053 DGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQ 1112
DG GQ G + G PG F GPPG P DG+ P Q + + P G Q
Sbjct: 623 DGEVGQKGDQ-----GHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQ 677
Query: 1113 G-TRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPH 1171
G + P + + + GP + PG A G + R F G +G
Sbjct: 678 GPSGLPGIPGEEGKEGRDGKPGPPGE-PGKAGEPGLPGPEGARGPPGFKGHTGD--SGAP 734
Query: 1172 GPGNQS 1177
GP +S
Sbjct: 735 GPRGES 740
Score = 83.2 bits (204), Expect = 2e-15
Identities = 131/434 (30%), Positives = 159/434 (36%), Gaps = 84/434 (19%)
Query: 750 PLFDGPSRPSVARDGPTKMIFEGP-NKLSPRI--DGPPTPASLR-FDGSPGQMGGGGPLR 805
P F GP P+ RDG + ++ G N L+ + D PP P L G G G G
Sbjct: 530 PGFPGPQGPA-GRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPG 588
Query: 806 FEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRF 865
EG +G+ G P GPPG G +G G+ G G G G +G PG F
Sbjct: 589 REGTEGKKGEAGPPGLPGPPGIAGP----QGSQGERGADGE--VGQKG--DQGHPGVPGF 640
Query: 866 EGPGGQP--VGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGH 921
GP G P G G G P G EGP G P G P G P G EG
Sbjct: 641 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPG-PQG------PSGLP-GIPGEEGKE 692
Query: 922 GPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLR 981
G G GP G+PG + P L G R GP G F+G G
Sbjct: 693 GRDGKP----GPPGEPG---KAGEPGLPGPEGAR--GPPG-------FKGHTGDSGA--- 733
Query: 982 FEGPHGQPG-VGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFD 1040
GP G+ G +G+ + L + G GP+ P G GP G+ G
Sbjct: 734 -PGPRGESGAMGLPGQEGLPGKDGDT---GPTGPQGPQGPRGPPGKNGS----------P 779
Query: 1041 GQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQ 1100
G PG+P G GQ G + E G PG F GP G +P GVP + P
Sbjct: 780 GSPGEPGP----SGTPGQKGSKGEN--GSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKP 833
Query: 1101 QASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFD 1160
F G G + D PPG G+ +
Sbjct: 834 GEPGFKGERGDPGIKGD------------------KGPPGGKGQPGDPGIPGHKGHTGLM 875
Query: 1161 SPQG-PNFNGPHGP 1173
PQG P NGP GP
Sbjct: 876 GPQGLPGENGPVGP 889
Score = 73.2 bits (178), Expect = 2e-12
Identities = 96/327 (29%), Positives = 113/327 (34%), Gaps = 89/327 (27%)
Query: 783 PPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRF-------- 834
P P G G G G L G +G G GPPG GT F
Sbjct: 288 PGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPG 347
Query: 835 -EGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG 893
+GP G+ G G G PGL +G PG L +GP G P G +GQ EG
Sbjct: 348 EQGPKGEKGDPGL--PGEPGL--QGRPGELGPQGPTGPP-------GAKGQ-------EG 389
Query: 894 PHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSG--AAIRFDGPHGQPGGGIRFEGPLLQQG 951
HG P G P G G GPSG ++ G G PG
Sbjct: 390 AHGAP-------GAAGNP-GAPGHVGAPGPSGPPGSVGAPGLRGTPGK------------ 429
Query: 952 VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP 1011
+G G+ A G+ G GP G PG P + G +G
Sbjct: 430 -----DGERGEKGAA----GEEGSPGP----VGPRGDPGA------PGLPGPPGKGKDGE 470
Query: 1012 SVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG 1071
G + GPLG G R G PG P G PG R + G G
Sbjct: 471 PGLRGSPGLPGPLGTKGDR----------GAPGIP----------GSPGSRGDPGIGVAG 510
Query: 1072 PQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
P GPPG + P G+P F GPQ
Sbjct: 511 PPGPSGPPGDKGSPGSRGLP-GFPGPQ 536
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 94.4 bits (233), Expect = 8e-19
Identities = 138/461 (29%), Positives = 170/461 (36%), Gaps = 88/461 (19%)
Query: 752 FDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQG 811
F GP P + GP GP P + P P G PG G GP +G +G
Sbjct: 614 FPGPLGPP-GKAGPV-----GP----PGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKG 663
Query: 812 QL--------GGGCPLRFEGPPGPVGTPLRFEGPIGQAG-GGGFRFEGSPGLRFEGSPGG 862
G P F+GPPGP G F GP G G G +G P G+PG
Sbjct: 664 DTISCNVTYPGRHGPPGFDGPPGPKG----FPGPQGAPGLSGSDGHKGRP-----GTPGT 714
Query: 863 LRFEGPGG--QPVGGLRFEGHRG-QPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEG 919
GP G +G F G +G PVG GP G P + P G L G
Sbjct: 715 AEIPGPPGFRGDMGDPGFGGEKGSSPVGP---PGPPGSPGVNGQKGIPGDPAFGHLGPPG 771
Query: 920 GHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGN 979
G SG GP G PG EGP G + +GP G+ G+
Sbjct: 772 KRGLSGVP-GIKGPRGDPGCP-GAEGPAGIPGF-LGLKGPKGRE--------------GH 814
Query: 980 LRFEGPHGQPGVGIRFEGP-LVQQGGGMRFEG-PSVPG-----GGLRIEGPLGQGG---- 1028
F G G PG P + Q G + G P PG G + GP G G
Sbjct: 815 AGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGL 874
Query: 1029 PRFEGCHALRFDGQPGQPSLLPRF--DGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPR 1086
P G H G PG P + F DGL G PGP+ R G PG F G PG++ +P
Sbjct: 875 PGRPGAH-----GPPGLPGIPGPFGDDGLPGPPGPKGPR--GLPG---FPGFPGERGKPG 924
Query: 1087 FDGVPQRFDGPQHQQASRFDIPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDP------- 1138
+G P P + S GL+G + P E +Q G +P
Sbjct: 925 AEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDG 984
Query: 1139 -PGNAFNAPSQGLQFQRHEQIFDSPQG-----PNFNGPHGP 1173
PG + + G+Q +R E P G P G GP
Sbjct: 985 FPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGP 1025
Score = 89.0 bits (219), Expect = 3e-17
Identities = 136/438 (31%), Positives = 157/438 (35%), Gaps = 93/438 (21%)
Query: 772 GPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
G L I P P GSPG G G GP+G G P GPPGP G P
Sbjct: 1033 GSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGD--PASHFGPPGPKGEP 1090
Query: 832 LRFEGPIGQAGGGGFRFEGSPGLR----FEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVG 887
G G G G +G PG++ G PG GP G P G G RGQP G
Sbjct: 1091 -GSPGCPGHFGASG--EQGLPGIQGPRGSPGRPGPPGSSGPPGCP-GDHGMPGLRGQP-G 1145
Query: 888 GLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEG 945
+ GP G +G P G GP G GP G PG G +G
Sbjct: 1146 EMGDPGPRGL----------QGDP-------GIPGPPG----IKGPSGSPGLNGLHGLKG 1184
Query: 946 PLLQQGV-GMRFEGPHGQ-SVAGLRFE-GQHNQLG----GNLRFEGPHGQPGVGIRFEGP 998
+G G+ GP G + GL+ E G G G +GP G PG GP
Sbjct: 1185 QKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPG----SSGP 1240
Query: 999 LVQQGGGMR----FEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDG 1054
G R P PG +GP G GPR G PG P L D
Sbjct: 1241 PGPAGATGRAPKDIPDPGPPGD----QGPPGPDGPR----------GAPGPPGLPGSVDL 1286
Query: 1055 LHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGV-----PQRFDGPQHQQASRFDIPL 1109
L G+PG PG PGP GPPG + P DG P F GPQ F P
Sbjct: 1287 LRGEPGDC--GLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHG--FPGPP 1342
Query: 1110 GLQGTRFDNHPSQRLESVSFNQTGPYND--PPGNAFNAPSQGLQFQRHEQIFDSPQGPNF 1167
G +G P GP + PP + + P +I P P
Sbjct: 1343 GEKGL-----PGPPGRKGPTGLPGPRGEPGPPADVDDCP----------RIPGLPGAPGM 1387
Query: 1168 NGPHG----PGNQSFSNP 1181
GP G PG + S P
Sbjct: 1388 RGPEGAMGLPGMRGPSGP 1405
Score = 85.9 bits (211), Expect = 3e-16
Identities = 109/354 (30%), Positives = 135/354 (38%), Gaps = 56/354 (15%)
Query: 771 EGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT 830
+GP SP GPP + G PG G G G G++G P +G PG G
Sbjct: 1111 QGPRG-SPGRPGPPGSS-----GPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGP 1164
Query: 831 PLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVG-GL 889
P +GP G G G G G + GL GP G PVG +G RG P G+
Sbjct: 1165 P-GIKGPSGSPGLNG--LHGLKGQKGTKGASGLHDVGPPG-PVGIPGLKGERGDPGSPGI 1220
Query: 890 RFEGPHGQ--PVGGLRFDNPRGQPVGGLRF----------EGGHGPSGAAIRFDGPHGQP 937
GP G+ P G P G P G G GP G DGP G P
Sbjct: 1221 SPPGPRGKKGPPGPPGSSGPPG-PAGATGRAPKDIPDPGPPGDQGPPGP----DGPRGAP 1275
Query: 938 G-GGIRFEGPLLQQGVG-MRFEGPHG----QSVAGLR-FEGQHNQLG--GNLRFEGPHGQ 988
G G+ LL+ G GP G G + F G + G G + F GP G
Sbjct: 1276 GPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGP 1335
Query: 989 PGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSL 1048
G F GP ++G GP G + GP G+ GP + R G PG P +
Sbjct: 1336 HG----FPGPPGEKG----LPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGM 1387
Query: 1049 -----LPRFDGLHGQPGPRFERTPGQPGPQRFD------GPPGQQVQPRFDGVP 1091
G+ G GP + PG G + D GPPG++ DG P
Sbjct: 1388 RGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYP 1441
Score = 81.6 bits (200), Expect = 5e-15
Identities = 133/434 (30%), Positives = 161/434 (37%), Gaps = 87/434 (20%)
Query: 782 GPPTPASLRFDGSPGQ-----MGGGGPLRFEGPQGQLG-GGCPLRFEGPPGPVGTPLRFE 835
GPP P L G PG+ +G GP F G G G G P R + PG G P
Sbjct: 385 GPPGPPGLL--GRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKP---- 438
Query: 836 GPIGQAGGGGFRFEGSPGLRF----EGSPGGLRFEGPGGQPVGGLRFEGHRGQP------ 885
G G G G +G PG G+PG +G G P GG +G +G
Sbjct: 439 GSPGLPGAPGL--QGLPGSSVIYCSVGNPGPQGIKGKVGPP-GGRGPKGEKGNEGLCACE 495
Query: 886 VGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG------- 938
G + GP G P G G P G L +G GP GA +GP G PG
Sbjct: 496 PGPMGPPGPPGLP-GRQGSKGDLGLP-GWLGTKGDPGPPGA----EGPPGLPGKHGASGP 549
Query: 939 -GGIRFEGPLLQQGV-GMRFE-GPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRF 995
G +G ++ V G + E GP G F GQ G + G G PG
Sbjct: 550 PGNKGAKGDMVVSRVKGHKGERGPDGPP----GFPGQPGSHGRD-GHAGEKGDPGPPGDH 604
Query: 996 EGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQG--GPRFEGCHALRFDGQPGQPSLLPRFD 1053
E GG F GP P G GP G G GP E H G PG P + D
Sbjct: 605 EDATP---GGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHP----GVPGHPGVRGP-D 656
Query: 1054 GLHGQPGPRFERT---PGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLG 1110
GL GQ G PG+ GP FDGPPG P+ F GPQ G
Sbjct: 657 GLKGQKGDTISCNVTYPGRHGPPGFDGPPG----------PKGFPGPQGAP--------G 698
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGP 1170
L G+ D H + T PPG + G ++ P P G
Sbjct: 699 LSGS--DGHKGR----PGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752
Query: 1171 HG----PGNQSFSN 1180
+G PG+ +F +
Sbjct: 753 NGQKGIPGDPAFGH 766
Score = 79.0 bits (193), Expect = 3e-14
Identities = 125/433 (28%), Positives = 151/433 (34%), Gaps = 89/433 (20%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGP 837
P GPP P G G G G F G +G LG G PL G G G + G
Sbjct: 124 PGHPGPPGPRGK--PGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFILGA 181
Query: 838 IGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQ 897
+ G G PGL G PG GP G G+ G+P GL GP GQ
Sbjct: 182 VKGIQGD----RGDPGL--PGLPGSWGAGGPAGPT-------GYPGEP--GL--VGPPGQ 224
Query: 898 PVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGP---LLQQGVGM 954
P NP G+ +G G G G G PG + E P L + G+
Sbjct: 225 PGRPGLKGNP------GVGVKGQMGDPGEV----GQQGSPGPTLLVEPPDFCLYKGEKGI 274
Query: 955 R-------FEGPHGQS-VAGLRFEGQHNQLGGNLRFEGPHGQPGV-------GIRFEGPL 999
+ GP G+ +G+ +G+ G F GP G PG G++ E L
Sbjct: 275 KGIPGMVGLPGPPGRKGESGIGAKGEKGIPG----FPGPRGDPGSYGSPGFPGLKGELGL 330
Query: 1000 VQQGGGMRFEGPSVPGGGLRIEGPLG------------QGGPRFEGCHALRFD-GQPGQP 1046
V G GP G GP G G P F G + D G PG P
Sbjct: 331 VGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGPPGPP 390
Query: 1047 SLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDG-PQHQQASRF 1105
LL G+PG G PGPQ F G PG + G P G P +
Sbjct: 391 GLL-------GRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGL 443
Query: 1106 DIPLGLQGTRFDNHPSQRLESVSFNQTGPYN-----DPPGNAFNAPSQGLQFQRHEQIFD 1160
GLQG P + S GP PPG +G +E +
Sbjct: 444 PGAPGLQGL-----PGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKG-----NEGLCA 493
Query: 1161 SPQGPNFNGPHGP 1173
GP GP GP
Sbjct: 494 CEPGP--MGPPGP 504
Score = 77.0 bits (188), Expect = 1e-13
Identities = 146/517 (28%), Positives = 187/517 (36%), Gaps = 84/517 (16%)
Query: 778 PRIDGPP-TPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG 836
P +GP P L G G+ G G F G G G C G PG G P + G
Sbjct: 791 PGAEGPAGIPGFLGLKGPKGREGHAG---FPGVPGPPGHSCERGAPGIPGQPGLP-GYPG 846
Query: 837 PIGQAGGGGFRFE-GSPG----LRFEGSPGGLRFEGPGGQP-----------VGGLRFEG 880
G GG G + G PG G PG GP G P G +G
Sbjct: 847 SPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKG 906
Query: 881 HRGQPVGGLRFEGPHGQPVGGLRFDNPRGQP----VGGLRFEGG-HGPSGAAIRFDGPHG 935
RG P G F G G+P G +G+P + GL + G G GA GP G
Sbjct: 907 PRGLP-GFPGFPGERGKP-GAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAI----GPPG 960
Query: 936 QPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRF 995
G E ++ Q GP G F G+ G +G G+PG R+
Sbjct: 961 DEG-----EMAIISQKGTPGEPGPPGDD----GFPGERGD-KGTPGMQGRRGEPG---RY 1007
Query: 996 EGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALRFD-GQPGQPSLLPRFD 1053
P +G P PG GP G G R F G L D G+PG P P F
Sbjct: 1008 GPPGFHRGEPGEKGQPGPPGP----PGPPGSTGLRGFIGFPGLPGDQGEPGSPG-PPGFS 1062
Query: 1054 GLHGQPGPRFERTPGQPG-PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQ 1112
G+ G GP+ G G P GPPG + +P G P F Q +P G+Q
Sbjct: 1063 GIDGARGPK-----GNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQ-----GLP-GIQ 1111
Query: 1113 GTRFDNHPSQRLESVSFNQTGP--YNDPPGNAFNAPSQGLQFQRHEQIFDSPQG----PN 1166
G R S + GP + PPG + GL+ Q E P+G P
Sbjct: 1112 GPR-----------GSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPG 1160
Query: 1167 FNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNIPAPMTVGNIQASQ--QVLSG 1224
GP G S S LN G + +S + G P P+ + ++ + G
Sbjct: 1161 IPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGP-PGPVGIPGLKGERGDPGSPG 1219
Query: 1225 VAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYPD 1261
++ P G+ P P +G PK PD
Sbjct: 1220 ISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPD 1256
Score = 56.6 bits (135), Expect = 2e-07
Identities = 66/202 (32%), Positives = 79/202 (39%), Gaps = 46/202 (22%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLR-FDGSPGQMGGGGPLRFEGPQGQL 813
P + R P GP P GPP P + F G G+ G GP+ F GPQG
Sbjct: 1281 PGSVDLLRGEPGDCGLPGP----PGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQG-- 1334
Query: 814 GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRF-EGSPG--------LRFEGSPGGLR 864
P F GPPG G P GP G+ G G G PG R G PG
Sbjct: 1335 ----PHGFPGPPGEKGLP----GPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPG 1386
Query: 865 FEGP-GGQPVGGLR---FEGHRGQP-VGGLR-FEGPHGQPVGGLRFDNPRGQ--PVGGLR 916
GP G + G+R G +G+P + G R +G G P P G+ G
Sbjct: 1387 MRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSP-------GPPGRKGDTGEDG 1439
Query: 917 FEGGHGPSGAAIRFDGPHGQPG 938
+ GG GP GP G PG
Sbjct: 1440 YPGGPGP-------PGPIGDPG 1454
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 792 DGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGG--GGF 846
DG PG G G G G GG GPPGP+G P GP G G GGF
Sbjct: 1420 DGVPGSPGPPGRKGDTGEDGYPGG------PGPPGPIGDP----GPKGFGPGYLGGF 1466
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 94.0 bits (232), Expect = 1e-18
Identities = 159/534 (29%), Positives = 199/534 (37%), Gaps = 105/534 (19%)
Query: 777 SPRIDGPPTPASLR------FDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT 830
SP GP P + DG+PG G G +GP+G G P G PGP+G
Sbjct: 1431 SPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGE 1490
Query: 831 PLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP----V 886
+G G G G R G PG+ G PG EGP G P G +G G+P V
Sbjct: 1491 AGE-KGERGPPGPAGSR--GLPGV--AGRPGAKGPEGPPG-PTGRQGEKGEPGRPGDPAV 1544
Query: 887 GGLRFEGPHGQ--------PVGGLRFDNPRGQPVGGLRFEGGHGPSG-----AAIRFDGP 933
G GP G+ P G RG P GL G GP G I G
Sbjct: 1545 VGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP--GLVLPGDPGPKGDPGDRGPIGLTGR 1602
Query: 934 HGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV-- 991
G PG GP ++G R GP G V +G+ + G EGP G PG+
Sbjct: 1603 AGPPGD----SGPPGEKGDPGR-PGPPG-PVGPRGRDGEVGEKGD----EGPPGDPGLPG 1652
Query: 992 -----GIR----FEGPLVQQG--------GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGC 1034
G+R GP+ ++G G G S P G GP G G +
Sbjct: 1653 KAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTG 1712
Query: 1035 HALRFDGQPGQPSLLPRFDGLHGQPGPRFER-------TPGQPGPQRFDGPPGQQVQPRF 1087
R G+PG GQ GPR + PG+ G + F GPPG Q P
Sbjct: 1713 PGAREKGEPGD----------RGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDP-- 1760
Query: 1088 DGVPQRFDGPQHQQASRFDIPLGLQG-TRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAP 1146
GV GP ++ R P GL G + D P + +GP N G A +
Sbjct: 1761 -GV----RGPAGEKGDRG--PPGLDGRSGLDGKPG------AAGPSGP-NGAAGKAGDPG 1806
Query: 1147 SQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNI 1206
GL R EQ P GP G G + LN +G D + + G G+
Sbjct: 1807 RDGLPGLRGEQGLPGPSGP--PGLPGKPGEDGKPGLNGKNGEPGDPG--EDGRKGEKGDS 1862
Query: 1207 PAPMTVG-NIQASQQVLSGVAQPVAFGQGQQFL--PVHPQNPGFVQNPSGALPK 1257
A G + ++ G+ P QG L PV P GF P G PK
Sbjct: 1863 GASGREGRDGPKGERGAPGILGP----QGPPGLPGPVGPPGQGFPGVPGGTGPK 1912
Score = 87.8 bits (216), Expect = 7e-17
Identities = 123/382 (32%), Positives = 149/382 (39%), Gaps = 67/382 (17%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSP 852
G PG+ G GP G QG G P+ G PGP G P GP G G G + G P
Sbjct: 2153 GLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP-GLAGPAGPQGPSGLK--GEP 2209
Query: 853 GLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPV 912
G E P G G P G + G P G GP G P GL GQ V
Sbjct: 2210 G---ETGPPGRGLTG----PTGAVGLPG----PPGPSGLVGPQGSP--GL-----PGQ-V 2250
Query: 913 GGLRFEGGHGPSGAAIRFDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGL--- 967
G G G GA+ + DG G PG G GP+ +G P GQ+V GL
Sbjct: 2251 GETGKPGAPGRDGASGK-DGDRGSPGVPGSPGLPGPVGPKGEPGPTGAP-GQAVVGLPGA 2308
Query: 968 -RFEGQHNQLGGNLRFE-GPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG 1025
+G L G+L E G G G+ GP ++G R P PG +G G
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGL----PGPRGEKGEAGRAGEPGDPGE----DGQKG 2360
Query: 1026 QGGPR-FEGCHALRFDGQPGQPSL--------------LPRFDGLHGQPGPRFERTPGQP 1070
GP+ F+G + G PG P P G GQ GPR E GQP
Sbjct: 2361 APGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEM--GQP 2418
Query: 1071 GP---QRFDGPPGQQVQPRFDGVP-----QRFDGPQHQQASRFDIPLGLQGTRFD-NHPS 1121
GP + GPPG++ P G P G + + D +GL G R + P
Sbjct: 2419 GPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPG 2478
Query: 1122 QRLESVSFNQTGP--YNDPPGN 1141
R E Q GP PPG+
Sbjct: 2479 IRGEDGRPGQEGPRGLTGPPGS 2500
Score = 83.6 bits (205), Expect = 1e-15
Identities = 126/432 (29%), Positives = 161/432 (37%), Gaps = 82/432 (18%)
Query: 778 PRIDGPPTPASLRFD-------------GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGP 824
P GPP P ++ D G PGQ G G + GP G+ G P EG
Sbjct: 2376 PGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGI 2435
Query: 825 PGPVGTPLRFEGPIGQAGGGGFRFE-GSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRG 883
PGP+G P G +G G G + + G PG+ G PG G G+P G+R E R
Sbjct: 2436 PGPLGPP-GPPGSVGPPGASGLKGDKGDPGV---GLPGP---RGERGEP--GIRGEDGRP 2486
Query: 884 QPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRF 943
G GP G R + VG +G G S + GP G G +
Sbjct: 2487 GQEGPRGLTGPPGS-----RGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAK-GDMGE 2540
Query: 944 EGPL-LQQGVGMRFEG--PHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGV--------- 991
GP L G R + P + G + L G GP GQPG
Sbjct: 2541 RGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGS 2600
Query: 992 -------GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPG 1044
GIR E G + F GP G ++G G G + + A G PG
Sbjct: 2601 PGKDGVPGIRGE------KGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEA----GPPG 2650
Query: 1045 QPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASR 1104
+P L G G+PG PGQ G +G G + FDG P GP+ Q +
Sbjct: 2651 RPGLAGH-KGEMGEPG-----VPGQSGAPGKEGLIGPKGDRGFDGQP----GPKGDQGEK 2700
Query: 1105 FDIPLGLQGT-RFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQ 1163
G +GT P S + GP PPG+ +GLQ Q+ E+ P
Sbjct: 2701 -----GERGTPGIGGFPG---PSGNDGSAGP-PGPPGSVGPRGPEGLQGQKGER---GPP 2748
Query: 1164 GPNFNGPHG-PG 1174
G G G PG
Sbjct: 2749 GERVVGAPGVPG 2760
Score = 81.6 bits (200), Expect = 5e-15
Identities = 119/346 (34%), Positives = 139/346 (40%), Gaps = 50/346 (14%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLS--PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQ 812
P P +A GP +GP+ L P GPP G+ G G GP GPQG
Sbjct: 2188 PGAPGLA--GPAGP--QGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
Query: 813 LGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQP 872
G G G G P G G +G G R GSPG+ GSPG GP G+P
Sbjct: 2244 PG------LPGQVGETGKP-GAPGRDGASGKDGDR--GSPGV--PGSPGLPGPVGPKGEP 2292
Query: 873 VGGLRFEGHRGQPVGGL-RFEGPHGQPVGGLRFDNPRGQP--VGGLRFEGGHGPSGAAIR 929
G GQ V GL +G G P GGL D G+P G G G G A R
Sbjct: 2293 GP----TGAPGQAVVGLPGAKGEKGAP-GGLAGDLV-GEPGAKGDRGLPGPRGEKGEAGR 2346
Query: 930 FDGPHGQPG--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHG 987
P G PG G GP F+G G V G + G+L G G
Sbjct: 2347 AGEP-GDPGEDGQKGAPGP-------KGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPG 2398
Query: 988 QPGVGIRFEGPLVQQG-----GGMRFEGPSVPGGGLRIEGPLGQGGPRFE----GCHALR 1038
PGV + F G +G G G + P G I GPLG GP G L+
Sbjct: 2399 APGV-VGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLK 2457
Query: 1039 FDGQPGQPSL-LPRFDGLHGQPGPRFE-RTPGQPGPQRFDGPPGQQ 1082
G G P + LP G G+PG R E PGQ GP+ GPPG +
Sbjct: 2458 --GDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSR 2501
Score = 80.5 bits (197), Expect = 1e-14
Identities = 115/351 (32%), Positives = 137/351 (39%), Gaps = 64/351 (18%)
Query: 778 PRIDGPP-TPASLRFDGSPGQMGGGGPLRFEGPQGQL----------------------G 814
P DG P +P G+PG G G GP+G G
Sbjct: 1301 PGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEG 1360
Query: 815 GGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRF-EGSPGLRFEGSPGGLRFEGPGGQPV 873
G P R +G PGP G P GP G G G R G PG +G G GP G
Sbjct: 1361 PGLPGR-KGDPGPSGPP----GPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGE 1415
Query: 874 GGLRFEGHRGQP--VGGLRFEGPHGQP-VGGLRFDNPRGQP-----VGGLRFEGGHGPSG 925
GG+ G G P G +GP G P G + D+ G P G +G GP G
Sbjct: 1416 GGIA-PGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPG 1474
Query: 926 AAIRFDGPHGQPGGGIRFEGPLLQQG-VGMRFEGPHGQSVAGLR-FEGQHNQLGGNLRFE 983
A GP G G F GPL + G G R GP G AG R G + G +
Sbjct: 1475 AI----GPKGDRG----FPGPLGEAGEKGER--GPPGP--AGSRGLPG----VAGRPGAK 1518
Query: 984 GPHGQPG-VGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQ 1042
GP G PG G + E + G GP+V G +G +G GPR A G+
Sbjct: 1519 GPEGPPGPTGRQGEKGEPGRPGDPAVVGPAV-AGPKGEKGDVGPAGPR----GATGVQGE 1573
Query: 1043 PGQPSL-LPRFDGLHGQPGPRFE-RTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
G P L LP G G PG R G+ GP GPPG++ P G P
Sbjct: 1574 RGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPP 1624
Score = 76.3 bits (186), Expect = 2e-13
Identities = 105/325 (32%), Positives = 128/325 (39%), Gaps = 52/325 (16%)
Query: 782 GPPTPASLRFD-GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ 840
G P LR G PG G G GPQG G G PG G P G G+
Sbjct: 1257 GEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRP----GSPGR 1312
Query: 841 AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG 900
AG G G+PGL+ GSPG GP G P G G +G+P + G G +
Sbjct: 1313 AGNPG--TPGAPGLK--GSPG---LPGPRGDP-GERGPRGPKGEPGAPGQVIGGEGPGLP 1364
Query: 901 GLRFD-NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFE-G 958
G + D P G P G GP G GP G PG G ++ G R E G
Sbjct: 1365 GRKGDPGPSGPP-------GPRGPLGD----PGPRGPPG----LPGTAMKGDKGDRGERG 1409
Query: 959 PHGQSVAGLR-FEGQHNQLGGNLRFEGPHGQPG----VGIRFEGP--LVQQGGGMRFEGP 1011
P G G+ E L G+ +GP G PG G +G L Q G +GP
Sbjct: 1410 PPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGP 1469
Query: 1012 SVPGGGL------RIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRF-E 1064
P G + GPLG+ G + E G PG P+ G+ G+PG + E
Sbjct: 1470 RGPPGAIGPKGDRGFPGPLGEAGEKGE-------RGPPG-PAGSRGLPGVAGRPGAKGPE 1521
Query: 1065 RTPGQPGPQRFDGPPGQQVQPRFDG 1089
PG G Q G PG+ P G
Sbjct: 1522 GPPGPTGRQGEKGEPGRPGDPAVVG 1546
Score = 73.9 bits (180), Expect = 1e-12
Identities = 103/340 (30%), Positives = 130/340 (38%), Gaps = 81/340 (23%)
Query: 773 PNKLSPR-IDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
P + PR + GPP GS G+ G G + G +G G + GPPGP G
Sbjct: 2486 PGQEGPRGLTGPP--------GSRGERGEKGDVGSAGLKGDKGDSAVIL--GPPGPRGAK 2535
Query: 832 --LRFEGPIGQAGGGGFRFE-GSPGLR-FEGSPG--------GLR-FEGPGGQPVGGLRF 878
+ GP G G G R + G PG + +G PG GLR GP GQP G
Sbjct: 2536 GDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP-GAAGI 2594
Query: 879 EGHRGQP----VGGLRFEGPHGQPVGGLRFDNPRGQP-----VGGLRFEGGHGPSGAAIR 929
G G P V G+R E G + F PRG G +G G G A
Sbjct: 2595 PGDPGSPGKDGVPGIRGEK------GDVGFMGPRGLKGERGVKGACGLDGEKGDKGEA-- 2646
Query: 930 FDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLR----FEGQHNQLGGNLRFEGP 985
GP G+PG +G + + GV + P + + G + F+GQ G +G
Sbjct: 2647 --GPPGRPGLA-GHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGE-KGE 2702
Query: 986 HGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQ 1045
G PG+G F GPS G GP G GPR G G
Sbjct: 2703 RGTPGIG--------------GFPGPSGNDGSAGPPGPPGSVGPR----------GPEG- 2737
Query: 1046 PSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQP 1085
G G+ GP ER G PG G G+Q +P
Sbjct: 2738 ------LQGQKGERGPPGERVVGAPGVPGAPGERGEQGRP 2771
Score = 73.6 bits (179), Expect = 1e-12
Identities = 119/358 (33%), Positives = 144/358 (40%), Gaps = 84/358 (23%)
Query: 772 GPNKLSPRIDGPPTPASLRFDGSPGQMGG---GGPLRFEGPQGQLGGGCPLRFEGPPGPV 828
GP L+ R GPP + G PG+ G GP GP+G+ G EGPPG
Sbjct: 1595 GPIGLTGRA-GPPGDS-----GPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDP 1648
Query: 829 GTPLRFEGPIGQAGGGGFRFEGSPGLR----FEGSPGGLRFEGPGGQPVGGLRFEGHRGQ 884
G P G+AG G R G+PG+R +G G +G G P G +G RG+
Sbjct: 1649 GLP-------GKAGERGLR--GAPGVRGPVGEKGDQGDPGEDGRNGSP-GSSGPKGDRGE 1698
Query: 885 PVGGLRFEGPHGQPVGGLRFDNP----RGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-- 938
P GP G P G L P +G+P G EG GP G G G PG
Sbjct: 1699 P-------GPPGPP-GRLVDTGPGAREKGEP-GDRGQEGPRGPKGD----PGLPGAPGER 1745
Query: 939 GGIRFEGPLLQQG-VGMRFEGPHGQ-SVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFE 996
G F GP QG G+R GP G+ G + L G GP G G +
Sbjct: 1746 GIEGFRGPPGPQGDPGVR--GPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAG 1803
Query: 997 GPLVQQGGGMRFE----GPSVPGGGLRIEGPLGQGG-PRFEGCHALRFDGQPGQPSLLPR 1051
P G+R E GPS P G + G G+ G P G +G+PG P R
Sbjct: 1804 DPGRDGLPGLRGEQGLPGPSGPPG---LPGKPGEDGKPGLNG-----KNGEPGDPGEDGR 1855
Query: 1052 --------FDGLHGQPGPRFER----------TPGQPGPQRFDGPPGQQVQPRFDGVP 1091
G G+ GP+ ER PG PGP GPPGQ F GVP
Sbjct: 1856 KGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPV---GPPGQ----GFPGVP 1906
Score = 73.6 bits (179), Expect = 1e-12
Identities = 140/464 (30%), Positives = 172/464 (37%), Gaps = 110/464 (23%)
Query: 754 GPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQL 813
GPS P P + +G L+ + P P G G G G +GP+G+
Sbjct: 1821 GPSGPPGLPGKPGE---DGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGER 1877
Query: 814 GGGCPLRFEGP---PGPVGTPLR-FEGPIGQAGGGGFRFE-GSPGLRFEGSPG--GLRFE 866
G L +GP PGPVG P + F G G G G R E GS G +G PG GLR E
Sbjct: 1878 GAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG--EQGLPGERGLRGE 1935
Query: 867 GPGGQP-------VGGLRFEG--------------------HRGQPVGGLRFEGPHGQ-- 897
PG P G++ R P G +GP G+
Sbjct: 1936 -PGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEG 1994
Query: 898 PVG-----GLRFD----NPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPG-GGIRFEGPL 947
P+G GL+ D P+G P L G GPSG A G G+PG G+ P
Sbjct: 1995 PIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLA----GEPGKPGIPGL----PG 2046
Query: 948 LQQGVGMRFE-GPHGQ-SVAGLRFEGQHNQLGGNLRFEGPHGQPG--VGIRFEGPLV--Q 1001
GVG G G+ G R E + G GP G PG V + GP + +
Sbjct: 2047 RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGE 2106
Query: 1002 QG-----------GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLP 1050
QG G +GP G I+G G+ GPR + DG PG P
Sbjct: 2107 QGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQ-------DGNPGLP---- 2155
Query: 1051 RFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLG 1110
G G GP E PG GP+ GP G P G P GP Q P G
Sbjct: 2156 ---GERGMAGP--EGKPGLQGPRGPPGPVGGHGDPGPPGAP-GLAGPAGPQG-----PSG 2204
Query: 1111 LQGTRFDNHPSQRLESVSFNQTGPYN-----DPPGNAFNAPSQG 1149
L+G + P R TGP PPG + QG
Sbjct: 2205 LKGEPGETGPPGR------GLTGPTGAVGLPGPPGPSGLVGPQG 2242
Score = 72.8 bits (177), Expect = 2e-12
Identities = 138/468 (29%), Positives = 169/468 (36%), Gaps = 102/468 (21%)
Query: 773 PNKLSPRID----GPPTPASLRFDGSPG--QMGGGGPLRFEGPQGQLGG----GCPLR-- 820
P P+ D GPP P D PG + G G EGP+G G G P
Sbjct: 1687 PGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERG 1746
Query: 821 ---FEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGL----RFEGSPGGLRFEGPGGQPV 873
F GPPGP G P GP G+ G G PGL +G PG GP G
Sbjct: 1747 IEGFRGPPGPQGDP-GVRGPAGEKGD-----RGPPGLDGRSGLDGKPGAAGPSGPNG-AA 1799
Query: 874 GGLRFEGHRGQPVGGLRFE----GPHGQP----------VGGLRFDNPRGQPVGGLRFEG 919
G G G P GLR E GP G P GL N G +G
Sbjct: 1800 GKAGDPGRDGLP--GLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKG 1857
Query: 920 GHGPSGAAIR--FDGPHGQ--------PGGGIRFEGPLLQQGVGMRFEG-PHGQSVAGLR 968
G SGA+ R DGP G+ P G GP+ G G F G P G G R
Sbjct: 1858 EKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQG--FPGVPGGTGPKGDR 1915
Query: 969 FEGQHNQLGGNLRFEGPHGQPG-----------VGIRFEG--PLVQ---QGGGMRFEGPS 1012
E G G G+PG GI+ +V+ + G P
Sbjct: 1916 GETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPE 1975
Query: 1013 ---VPGGGLRIEGPLGQGGP-RFEGCHALRFD----GQPGQPSLL------PRFDGLHGQ 1058
P G +GP G+ GP F G L+ D G G P L P GL G+
Sbjct: 1976 RRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGE 2035
Query: 1059 PG-PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFD 1117
PG P PG+ G G PG++ +R + + + R D P GL GT
Sbjct: 2036 PGKPGIPGLPGRAGGVGEAGRPGER--------GERGEKGERGEQGR-DGPPGLPGT--P 2084
Query: 1118 NHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGP 1165
P VS ++ G PG + GL+ + E + QGP
Sbjct: 2085 GPPGPPGPKVSVDEPG-----PGLSGEQGPPGLKGAKGEPGSNGDQGP 2127
Score = 69.7 bits (169), Expect = 2e-11
Identities = 105/360 (29%), Positives = 130/360 (36%), Gaps = 70/360 (19%)
Query: 749 RPLFDGPSRPSVARDGPT-KMIFEGPNKLSPRIDGPPTPASLR----FDGSPGQMGGGGP 803
RP GP P RDG + EGP P + G LR G G+ G G
Sbjct: 1620 RPGPPGPVGPR-GRDGEVGEKGDEGPPG-DPGLPGKAGERGLRGAPGVRGPVGEKGDQGD 1677
Query: 804 LRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGL 863
+G G G P G PGP G P R G G R +G PG R + P G
Sbjct: 1678 PGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDT-----GPGAREKGEPGDRGQEGPRGP 1732
Query: 864 RFE-GPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHG 922
+ + G G P G EG RG P GP G P G+R P G+ +G G
Sbjct: 1733 KGDPGLPGAP-GERGIEGFRGPP-------GPQGDP--GVR--GPAGE-------KGDRG 1773
Query: 923 PSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRF 982
P G R G G+PG GP G + P + GLR G
Sbjct: 1774 PPGLDGR-SGLDGKPGAA----GPSGPNGAAGKAGDPGRDGLPGLR---------GEQGL 1819
Query: 983 EGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPG--------GGLRIEGPLGQGGPRFEGC 1034
GP G PG+ + G + G + P PG G G G+ GP+
Sbjct: 1820 PGPSGPPGLPGK-PGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPK---- 1874
Query: 1035 HALRFDGQPGQPSLL-----PRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDG 1089
G+ G P +L P G G PG F PG GP+ G G + + G
Sbjct: 1875 ------GERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPG 1928
Score = 43.1 bits (100), Expect = 0.002
Identities = 60/204 (29%), Positives = 78/204 (38%), Gaps = 44/204 (21%)
Query: 983 EGPHGQPG-VGIRFE-GPLVQQG--GGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALR 1038
+G G+PG +G+R + GP G G GP P G +G G G
Sbjct: 1253 KGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGA--------- 1303
Query: 1039 FDGQPGQPSLLPRFDGLHGQPG-PRFERTPGQPGPQRFD----GPPGQQVQPRFDGVPQR 1093
DG+PG P G G PG P + +PG PGP R D GP G + +P G
Sbjct: 1304 -DGRPGSPGRA----GNPGTPGAPGLKGSPGLPGP-RGDPGERGPRGPKGEPGAPGQVIG 1357
Query: 1094 FDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP-PGNAFNAPSQGLQF 1152
+GP GL G + D PS GP DP P P ++
Sbjct: 1358 GEGP------------GLPGRKGDPGPSG-----PPGPRGPLGDPGPRGPPGLPGTAMKG 1400
Query: 1153 QRHEQIFDSPQGPNFNG--PHGPG 1174
+ ++ P GP G P PG
Sbjct: 1401 DKGDRGERGPPGPGEGGIAPGEPG 1424
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 94.0 bits (232), Expect = 1e-18
Identities = 111/346 (32%), Positives = 135/346 (39%), Gaps = 65/346 (18%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP--------LR 833
GPP P G PG MG G + GP G LG P G PG G P L
Sbjct: 1065 GPPGPTG--DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLG 1122
Query: 834 FEGPIGQAGGGGFRFEGSPGL-RFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRF- 891
F+G G G G R G PGL F GSPG + G G+ G G +G+ G LR
Sbjct: 1123 FKGIKGLLGPPGIR--GPPGLPGFPGSPGPMGIRGDQGRD-GIPGPAGEKGE-TGLLRAP 1178
Query: 892 EGPHGQPVGGLRFDNPRGQP--------VGGLRFEGGHGPSGAAIRFDGPHGQPG----G 939
GP G P G RG P G + G GP+G F GP G PG G
Sbjct: 1179 PGPRGNP-GAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE-GFPGPPGLPGAIIPG 1236
Query: 940 GIRFEGPLLQQGV--GMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEG 997
GP +G GP G V G++ + G++ GP G PG G
Sbjct: 1237 QTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGD------KGSMGHPGPKGPPGTA----G 1286
Query: 998 PLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRF----- 1052
+ G R P PG + GP +G P F+G ++ G+ G P L
Sbjct: 1287 DMGPPG---RLGAPGTPG----LPGP--RGDPGFQGFPGVK--GEKGNPGFLGSIGPPGP 1335
Query: 1053 ------DGLHGQPGP-RFERTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
G+ G PG + PG PGP G PG Q +P G P
Sbjct: 1336 IGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPP 1381
Score = 85.1 bits (209), Expect = 5e-16
Identities = 133/442 (30%), Positives = 167/442 (37%), Gaps = 86/442 (19%)
Query: 772 GPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP 831
GP+++S I P F G+PG+ G G G +G +G PGP G P
Sbjct: 943 GPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKG---------LKGLPGPAGPP 993
Query: 832 LRFEGPIGQAGGGGFRFEGSPGLR-FEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-VGGL 889
GP G G G G PGLR GS G + G G+ G L F G G+P + G+
Sbjct: 994 ----GPRGDLGSTG--NPGEPGLRGIPGSMGNMGMPGSKGKR-GTLGFPGRAGRPGLPGI 1046
Query: 890 R-FEGPHGQP--VGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQ--PGGGIRFE 944
+G G+P G R P G P G G G G + GP G P G
Sbjct: 1047 HGLQGDKGEPGYSEGTR-PGPPG-PTGDPGLPGDMGKKG-EMGQPGPPGHLGPAGPEGAP 1103
Query: 945 GPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-------VGIR--- 994
G G+ + GPHG L F+G LG GP G PG +GIR
Sbjct: 1104 GSPGSPGLPGK-PGPHGD----LGFKGIKGLLGPP-GIRGPPGLPGFPGSPGPMGIRGDQ 1157
Query: 995 ----FEGPLVQQGGGMRFEGPSVPGGGLRIEGPLG-QGGPRFEGCHALR----------- 1038
GP ++G P P G +G G +G P F G +
Sbjct: 1158 GRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGP 1217
Query: 1039 -----FDGQPGQP-SLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQ 1092
F G PG P +++P G G PG R +PG PGP GPPG V G+
Sbjct: 1218 TGIEGFPGPPGLPGAIIPGQTGNRGPPGSR--GSPGAPGP---PGPPGSHV----IGIKG 1268
Query: 1093 RFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF-NQTGPYNDPPGNAFNAPSQGLQ 1151
H P G GT D P RL + GP DP F G++
Sbjct: 1269 DKGSMGHPG------PKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF----PGVK 1318
Query: 1152 FQRHEQIFDSPQGPNFNGPHGP 1173
++ F GP GP GP
Sbjct: 1319 GEKGNPGFLGSIGP--PGPIGP 1338
Score = 80.1 bits (196), Expect = 2e-14
Identities = 132/443 (29%), Positives = 164/443 (37%), Gaps = 78/443 (17%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGP------------- 824
P DG P + F G PG G G F G +G L GCP + P
Sbjct: 688 PGPDGEPGIPGIGFPGPPGPKGDQG---FPGTKGSL--GCPGKMGEPGLPGKPGLPGAKG 742
Query: 825 ------PGPVGTPLRFEGPIGQAG-GGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLR 877
PG GTP F G G +G G G PGL G+PG +GP G P G
Sbjct: 743 EPAVAMPGGPGTP-GFPGERGNSGEHGEIGLPGLPGL--PGTPGNEGLDGPRGDP-GQPG 798
Query: 878 FEGHRGQPVGGLRFEGPHG-QPVGGLRFDNPRGQPVGGLRFEGGHGPSG-------AAIR 929
G +G P G EGP G Q + GL + +GQ G R G GP G
Sbjct: 799 PPGEQGPP--GRCIEGPRGAQGLPGL--NGLKGQQ--GRR--GKTGPKGDPGIPGLDRSG 850
Query: 930 FDGPHGQPG--GGIRFEGPLLQQGV--GMRFEGPHGQS--VAGLRFEGQHNQLG--GNLR 981
F G G PG G GPL Q+G GP G+ + + F G G GN
Sbjct: 851 FPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPG 910
Query: 982 FEGPHGQPGV-GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR-FEGCHALRF 1039
G G PG+ G++ + G +G P + G G+ G + F G +
Sbjct: 911 TPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKG 970
Query: 1040 D-GQPGQPSL--LPRFDGLHGQPGPRFE----RTPGQPGPQRFDGPPGQQVQPRFDGVPQ 1092
+ G PG P L L G G PGPR + PG+PG + G G P G
Sbjct: 971 NRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRG 1030
Query: 1093 RFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP--PGNAFNAPSQGL 1150
P +A R +P G+ G + D E GP DP PG+ G
Sbjct: 1031 TLGFP--GRAGRPGLP-GIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMG- 1086
Query: 1151 QFQRHEQIFDSPQGPNFNGPHGP 1173
P P GP GP
Sbjct: 1087 ----------QPGPPGHLGPAGP 1099
Score = 75.5 bits (184), Expect = 4e-13
Identities = 134/465 (28%), Positives = 165/465 (35%), Gaps = 136/465 (29%)
Query: 778 PRIDGPPTPASLRFDGSPGQMGGGGP----------------------------LRFEGP 809
P D TP S GSPG G GP +GP
Sbjct: 409 PGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGP 468
Query: 810 QGQLG---GGCPLRFEGPPGPVGTP--LRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLR 864
+G+ G CP GPPG G P +G G+ G G + GSP GSPG
Sbjct: 469 KGEPGLLCTQCPY-IPGPPGLPGLPGLHGVKGIPGRQGAAGLK--GSP-----GSPGNTG 520
Query: 865 FEG----PGGQPVGGLRFE-----------------GHRGQPVGGLRFEGPHGQPVGGLR 903
G PG Q GL+ E G RGQP G +G G P G
Sbjct: 521 LPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQP-GRKGLDGIPGTP-GVKG 578
Query: 904 FDNPRGQ-----------PVGGLRFEGGHGPSG-AAIRFDGPHGQPG-----------GG 940
P+G+ P G G GP+G A GP G+PG G
Sbjct: 579 LPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGP 638
Query: 941 IRFEGPLLQQGVGMRFEGPHG----------QSVAGLRFEGQHNQLG--GNLRFEGPHGQ 988
GP + V GP G Q G+ LG G+ GP G+
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGI-----PGSLGKCGDPGLPGPDGE 693
Query: 989 PGV-GIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGG-------PRFEGCHALRFD 1040
PG+ GI F GP +G +G G L G +G+ G P +G A+
Sbjct: 694 PGIPGIGFPGPPGPKGD----QGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMP 749
Query: 1041 GQPGQPSLLPR--FDGLHGQPG-PRFERTPGQPGPQRFDGP---PGQQVQPRFDGVPQR- 1093
G PG P G HG+ G P PG PG + DGP PGQ P G P R
Sbjct: 750 GGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRC 809
Query: 1094 FDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP 1138
+GP+ Q +P GL G + +R +TGP DP
Sbjct: 810 IEGPRGAQG----LP-GLNGLK--GQQGRR------GKTGPKGDP 841
Score = 74.7 bits (182), Expect = 6e-13
Identities = 114/363 (31%), Positives = 139/363 (38%), Gaps = 66/363 (18%)
Query: 782 GPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA 841
GPP GSPGQ G GP GPQG G F G PG G+ +G G +
Sbjct: 55 GPP--------GSPGQKGFTGPEGLPGPQGPKG------FPGLPGLTGS----KGVRGIS 96
Query: 842 GGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQPV 899
G GF GSPGL G+PG G G P G +G +G P G L + G G
Sbjct: 97 GLPGF--SGSPGL--PGTPGNTGPYGLVGVP-GCSGSKGEQGFPGLPGTLGYPGIPG--A 149
Query: 900 GGLRFDNPRGQPV----------GGLRFEGGHGPSG--AAIRFDGPHGQPG--GGIRFEG 945
GL+ +G P G G GP G F GP G PG G F G
Sbjct: 150 AGLK--GQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPG 207
Query: 946 PLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPG-VGIRFEGPLVQQGG 1004
+ +G +G G+ V G H G GP G PG V + GP
Sbjct: 208 AMGPRGP----KGHMGERVIG------HKGERGVKGLTGPPGPPGTVIVTLTGP----DN 253
Query: 1005 GMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLL--PRFDGLHGQPGPR 1062
+G G + GP G G E + + G PG P L P DG+ G PG
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEK--GAPGDPGLQGKPGKDGVPGFPGSE 311
Query: 1063 -FERTPGQPGPQRFDGPPGQQVQ---PRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDN 1118
+ G PG DG GQ+ P F G + +D Q + P G +G R
Sbjct: 312 GVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQ 371
Query: 1119 HPS 1121
PS
Sbjct: 372 GPS 374
Score = 74.3 bits (181), Expect = 8e-13
Identities = 108/356 (30%), Positives = 134/356 (37%), Gaps = 81/356 (22%)
Query: 793 GSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSP 852
G PG G G F GP+G G P F G PG G+ +G G +G G F GSP
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGS----KGVRGISGLPG--FSGSP 105
Query: 853 GLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP--VGGLRFEGPHGQPVGGLRFDNPRGQ 910
GL G+PG G G P G +G +G P G L + G G GL+ +G
Sbjct: 106 GL--PGTPGNTGPYGLVGVP-GCSGSKGEQGFPGLPGTLGYPGIPG--AAGLK--GQKGA 158
Query: 911 PV----------GGLRFEGGHGPSG--AAIRFDGPHGQPG--GGIRFEGPLLQQG----- 951
P G G GP G F GP G PG G F G + +G
Sbjct: 159 PAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHM 218
Query: 952 ----VGMRFE----------GPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEG 997
+G + E GP G + L L G +G G+PG G
Sbjct: 219 GERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP----PG 274
Query: 998 P--LVQQGGGMRFEGPSVPGGGLRIEGPLGQGG-PRFEGCHALRFDGQPGQPSLLPRFDG 1054
P L + G P PG ++G G+ G P F G ++ G G P L+ DG
Sbjct: 275 PSGLPGESYGSEKGAPGDPG----LQGKPGKDGVPGFPGSEGVK--GNRGFPGLMGE-DG 327
Query: 1055 LHGQPG----PRF---------------ERTPGQPGPQRFDGPPGQQVQPRFDGVP 1091
+ GQ G P F E TPG PGP+ GP G P G P
Sbjct: 328 IKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSP 383
Score = 72.0 bits (175), Expect = 4e-12
Identities = 110/342 (32%), Positives = 124/342 (36%), Gaps = 64/342 (18%)
Query: 777 SPRIDGPPTPASLRFD-----GSPGQMGGGGPLRFEGPQGQLG---GGCPLRFEGPPGPV 828
SP GPP R G PG +G G +GP+G+ G CP GPPG
Sbjct: 431 SPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPY-IPGPPGLP 489
Query: 829 GTP--LRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEG----PGGQPVGGLRFE-GH 881
G P +G G+ G G + GSPG SPG G PG Q GL+ E G
Sbjct: 490 GLPGLHGVKGIPGRQGAAGLK--GSPG-----SPGNTGLPGFPGFPGAQGDPGLKGEKGE 542
Query: 882 RGQPVGGLRFEGP---HGQPVGGLRFDNPRGQP-VGGLRFEGGHGPSGAAIRFDGPHGQP 937
QP G + G GQP G D G P V GL G GP G P
Sbjct: 543 TLQPEGQVGVPGDPGLRGQP-GRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601
Query: 938 G--GGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRF 995
G G GP G G P G+ L G G G PG
Sbjct: 602 GSPGSPGPAGPAGPPGYG-----PQGEP-----------GLQGTQGVPGAPGPPGEA--- 642
Query: 996 EGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGL 1055
GP + GP P G GP QG P G +L G PG LP DG
Sbjct: 643 -GPRGELSVSTPVPGPPGPPGPPGHPGP--QGPPGIPG--SLGKCGDPG----LPGPDGE 693
Query: 1056 HGQPGPRFERTPGQPGPQRFDGP------PGQQVQPRFDGVP 1091
G PG F PG G Q F G PG+ +P G P
Sbjct: 694 PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP 735
Score = 69.7 bits (169), Expect = 2e-11
Identities = 103/327 (31%), Positives = 122/327 (37%), Gaps = 50/327 (15%)
Query: 783 PPTPASLRFDGSPGQMG----GGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP--LRFEG 836
P P +L + G PG G G P + E + G L G PGP G P F G
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGL--PGAPGPQGLPGPPGFPG 192
Query: 837 PIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQP-VGGLRFE-GP 894
P+G G GF G PG + GP G G R GH+G+ V GL GP
Sbjct: 193 PVGPPGPPGFF----------GFPGAMGPRGPKGHM--GERVIGHKGERGVKGLTGPPGP 240
Query: 895 HGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFE-----GPLLQ 949
G + L + R G +G G G GP G PG E P LQ
Sbjct: 241 PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP----GPSGLPGESYGSEKGAPGDPGLQ 296
Query: 950 QGVGMRFEG----PHGQSVAGLR-FEGQHNQLGGNLRFEGPHGQPGVGIRFEGPL----- 999
G +G P + V G R F G + G + +G G PG F GP
Sbjct: 297 GKPGK--DGVPGFPGSEGVKGNRGFPGLMGEDGIKGQ-KGDIGPPG----FRGPTEYYDT 349
Query: 1000 VQQGGGMRFEGPSVPGGGLRIEGPLGQGG-PRFEGCHALRFDGQPGQPSLLPRFDGLHGQ 1058
Q+ G GP P G +GP G G P G G PG P L G G+
Sbjct: 350 YQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGS-KGERGR 408
Query: 1059 PGPRFERTPGQPGPQRFDGPPGQQVQP 1085
PG TPG PG G PG P
Sbjct: 409 PGKDAMGTPGSPGCAGSPGLPGSPGPP 435
Score = 68.6 bits (166), Expect = 5e-11
Identities = 141/501 (28%), Positives = 176/501 (35%), Gaps = 109/501 (21%)
Query: 775 KLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRF 834
K P + P P + F G G G G + G G G +GP G G P
Sbjct: 741 KGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQP--- 797
Query: 835 EGPIGQAGGGGFRFEGS------PGLR-FEGSPGGLRFEGPGGQP-VGGL---RFEGHRG 883
GP G+ G G EG PGL +G G GP G P + GL F G G
Sbjct: 798 -GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETG 856
Query: 884 QP-VGGLRFE-GPHGQP--VGGLRFDNPRGQP--VGGLRFEGGHGPSGAAIRFDGPHGQP 937
P + G + E GP GQ G P G+ +G + F G GP GP G P
Sbjct: 857 SPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-------PGPPGNP 909
Query: 938 G-----GGIRFEGPLLQQGV-GMRFE----GPHGQS----VAGLRFEGQHNQLGGNLRFE 983
G G G Q+G G + E G G S V G + E GN +
Sbjct: 910 GTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEK 969
Query: 984 GPHGQPGV-GIR----FEGPLVQQG--GGMRFEG-PSVPG--------GGLRIEGPLGQ- 1026
G G PG+ G++ GP G G + G P PG G + + G G+
Sbjct: 970 GNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKR 1029
Query: 1027 ---------GGPRFEGCHALRFD------------------GQPGQPSLLPRFDGLHGQP 1059
G P G H L+ D G PG P + + G GQP
Sbjct: 1030 GTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGK-KGEMGQP 1088
Query: 1060 GPRF-------ERTPGQPGPQRFDGPPGQQVQPRFDGV-----PQRFDGPQHQQA-SRFD 1106
GP E PG PG G PG F G+ P GP
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSP 1148
Query: 1107 IPLGLQGTR-FDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQG- 1164
P+G++G + D P E +TG PPG N +QG + R F G
Sbjct: 1149 GPMGIRGDQGRDGIPGPAGEK---GETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGR 1205
Query: 1165 ---PNFNGPHGP-GNQSFSNP 1181
GP GP G + F P
Sbjct: 1206 KGAMGDAGPRGPTGIEGFPGP 1226
Score = 62.4 bits (150), Expect = 3e-09
Identities = 65/190 (34%), Positives = 77/190 (40%), Gaps = 28/190 (14%)
Query: 755 PSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPAS---LRFDGSPGQMGGGGPLRFEGPQG 811
P P G T ++ SP GPP P + G G MG GP +GP G
Sbjct: 1227 PGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP---KGPPG 1283
Query: 812 QLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPGGLRFEGPGG 870
G P G PG G P GP G G F+G PG++ E G+PG L GP G
Sbjct: 1284 TAGDMGPPGRLGAPGTPGLP----GPRGDPG-----FQGFPGVKGEKGNPGFLGSIGPPG 1334
Query: 871 QPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRF 930
P+G G RG P G L+ G P P G P G +G GP G
Sbjct: 1335 -PIGPKGPPGVRGDP-GTLKIISLPGSP-------GPPGTP-GEPGMQGEPGPPGPPGNL 1384
Query: 931 D--GPHGQPG 938
GP G+PG
Sbjct: 1385 GPCGPRGKPG 1394
Score = 38.9 bits (89), Expect = 0.039
Identities = 35/97 (36%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 754 GPSRPSVARDGP-TKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQ 812
GP P R P T I P P P TP G PG G GP GP G
Sbjct: 1337 GPKGPPGVRGDPGTLKIISLPGSPGP----PGTP------GEPGMQGEPGP---PGPPGN 1383
Query: 813 LGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFE 849
LG P G G GTP GP G+ G G + E
Sbjct: 1384 LGPCGPRGKPGKDGKPGTP----GPAGEKGNKGSKGE 1416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,313,413
Number of Sequences: 37866
Number of extensions: 4505866
Number of successful extensions: 33173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 1149
Number of HSP's that attempted gapping in prelim test: 15740
Number of HSP's gapped (non-prelim): 6715
length of query: 1555
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1439
effective length of database: 13,855,062
effective search space: 19937434218
effective search space used: 19937434218
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.