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Search of human proteins with 123317881
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 745 0.0
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 655 0.0
gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens] 326 2e-89
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 245 5e-65
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 236 2e-62
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 176 4e-44
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 176 4e-44
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 176 4e-44
gi|21389571 GSG1-like isoform 2 [Homo sapiens] 143 3e-34
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 39 0.009
gi|124256496 heat shock 70kDa protein 1-like [Homo sapiens] 37 0.028
gi|24234686 heat shock 70kDa protein 8 isoform 2 [Homo sapiens] 35 0.10
gi|5729877 heat shock 70kDa protein 8 isoform 1 [Homo sapiens] 35 0.10
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 34 0.18
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 34 0.23
gi|167466173 heat shock 70kDa protein 1B [Homo sapiens] 33 0.52
gi|194248072 heat shock 70kDa protein 1A [Homo sapiens] 33 0.52
gi|13676857 heat shock 70kDa protein 2 [Homo sapiens] 32 0.68
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 32 0.89
gi|225579067 solute carrier family 12, member 4 isoform e [Homo ... 32 1.2
gi|225579065 solute carrier family 12, member 4 isoform d [Homo ... 32 1.2
gi|225579063 solute carrier family 12, member 4 isoform c [Homo ... 32 1.2
gi|225579061 solute carrier family 12, member 4 isoform b [Homo ... 32 1.2
gi|4827006 solute carrier family 12, member 4 isoform a [Homo sa... 32 1.2
gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens] 31 2.0
gi|134304840 KIAA0319 [Homo sapiens] 30 3.4
gi|7656981 claudin 15 [Homo sapiens] 30 3.4
gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens] 30 4.4
gi|155969705 chloride channel Kb [Homo sapiens] 30 4.4
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 29 5.7
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 745 bits (1924), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK
Sbjct: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
Query: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE
Sbjct: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
Query: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFIS 180
PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFIS
Sbjct: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFIS 180
Query: 181 FLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPH 240
FLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPH
Sbjct: 181 FLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPH 240
Query: 241 VWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPR 300
VWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPR
Sbjct: 241 VWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPR 300
Query: 301 RLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEE 360
RLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEE
Sbjct: 301 RLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEE 360
Query: 361 QC 362
QC
Sbjct: 361 QC 362
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 655 bits (1691), Expect = 0.0
Identities = 323/347 (93%), Positives = 324/347 (93%), Gaps = 23/347 (6%)
Query: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
Query: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
Query: 136 RSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA 195
GERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA
Sbjct: 109 ---------GERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA 159
Query: 196 CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF 255
CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF
Sbjct: 160 CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF 219
Query: 256 TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY 315
TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY
Sbjct: 220 TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY 279
Query: 316 HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC 362
HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC
Sbjct: 280 HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC 326
>gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
Length = 321
Score = 326 bits (836), Expect = 2e-89
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK
Sbjct: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
Query: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE
Sbjct: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
Query: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR 160
PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR
Sbjct: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR 160
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 245 bits (625), Expect = 5e-65
Identities = 124/279 (44%), Positives = 174/279 (62%), Gaps = 40/279 (14%)
Query: 27 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 86
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
Query: 87 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQF 132
Y+WETGDDRF FR+F +G+W SCEE +
Sbjct: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEEL-------------- 113
Query: 133 RALRSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTG 192
+ GE+CRSFI+L P +++ +LWLS+ +++ YI L + F L+ +L +
Sbjct: 114 ---------SGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSS 164
Query: 193 NPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAW 252
N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW+F +AW
Sbjct: 165 NVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAW 224
Query: 253 LSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 288
SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 225 GSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 263
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 236 bits (603), Expect = 2e-62
Identities = 121/145 (83%), Positives = 122/145 (84%), Gaps = 23/145 (15%)
Query: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
Query: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
Query: 136 RSSGTAAAKGERCRSFIELTPPAKR 160
GERCRSFIELTPPAKR
Sbjct: 109 ---------GERCRSFIELTPPAKR 124
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 176 bits (445), Expect = 4e-44
Identities = 96/254 (37%), Positives = 145/254 (57%), Gaps = 27/254 (10%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSA 202
+ E+CRSF + P ++ +LWLS+G ++ I L S +LL + + L++ A
Sbjct: 102 GEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDA 161
Query: 203 FAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASA 262
A+ VL+GLLGMVAHMMY+ +FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +
Sbjct: 162 LVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVS 221
Query: 263 VTTFNTYTRMVLEF 276
V+ + +T LEF
Sbjct: 222 VSAMSRFTAARLEF 235
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 176 bits (445), Expect = 4e-44
Identities = 96/254 (37%), Positives = 145/254 (57%), Gaps = 27/254 (10%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSA 202
+ E+CRSF + P ++ +LWLS+G ++ I L S +LL + + L++ A
Sbjct: 102 GEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDA 161
Query: 203 FAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASA 262
A+ VL+GLLGMVAHMMY+ +FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +
Sbjct: 162 LVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVS 221
Query: 263 VTTFNTYTRMVLEF 276
V+ + +T LEF
Sbjct: 222 VSAMSRFTAARLEF 235
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 176 bits (445), Expect = 4e-44
Identities = 96/254 (37%), Positives = 145/254 (57%), Gaps = 27/254 (10%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSA 202
+ E+CRSF + P ++ +LWLS+G ++ I L S +LL + + L++ A
Sbjct: 102 GEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDA 161
Query: 203 FAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASA 262
A+ VL+GLLGMVAHMMY+ +FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +
Sbjct: 162 LVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVS 221
Query: 263 VTTFNTYTRMVLEF 276
V+ + +T LEF
Sbjct: 222 VSAMSRFTAARLEF 235
>gi|21389571 GSG1-like isoform 2 [Homo sapiens]
Length = 176
Score = 143 bits (360), Expect = 3e-34
Identities = 66/105 (62%), Positives = 84/105 (80%), Gaps = 3/105 (2%)
Query: 187 DLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGW 246
+L + N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW
Sbjct: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGW 63
Query: 247 AFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 288
+F +AW SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 64 SFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 108
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.009
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 181 FLLLLTDLLLTGNPACGL--------KLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNL 232
F +L T LLL G G + A + V +GL ++ ++Y +
Sbjct: 110 FPILSTILLLLGGLCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSD 169
Query: 233 GPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLP 292
++ + + +NYGW+FY LSF V N Y E + K + F + + P
Sbjct: 170 KRDEDKKNHYNYGWSFYFGALSFIVAETVGVLAVNIYIEKNKELRFKTKREFLKASSSSP 229
Query: 293 H 293
+
Sbjct: 230 Y 230
>gi|124256496 heat shock 70kDa protein 1-like [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.028
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 270 TRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEG 329
+ V EFK KH K +N + RRL +A S N I S+ EG
Sbjct: 241 SHFVEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQANLEIDSLYEG 292
Query: 330 VDFYSELRNKGFQ-------RGASQELKEAVRSS 356
+DFY+ + F+ RG + +++A+R +
Sbjct: 293 IDFYTSITRARFEELCADLFRGTLEPVEKALRDA 326
>gi|24234686 heat shock 70kDa protein 8 isoform 2 [Homo sapiens]
Length = 493
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 273 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 332
+ EFK KH K EN + RRL +A S + I S+ EG+DF
Sbjct: 242 IAEFKRKHKKDISENKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGIDF 293
Query: 333 YSELRNKGFQ-------RGASQELKEAVRSS 356
Y+ + F+ RG +++A+R +
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDA 324
>gi|5729877 heat shock 70kDa protein 8 isoform 1 [Homo sapiens]
Length = 646
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 273 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 332
+ EFK KH K EN + RRL +A S + I S+ EG+DF
Sbjct: 242 IAEFKRKHKKDISENKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGIDF 293
Query: 333 YSELRNKGFQ-------RGASQELKEAVRSS 356
Y+ + F+ RG +++A+R +
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDA 324
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 206 VSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHV--WNYGWAFYMAWLSFTCCMASAV 263
VS+ LS ++G++ ++ + N G R ++YGW+FY SF V
Sbjct: 143 VSAGLSNIIGIIVYI--------SANAGDPGQRDSKKSYSYGWSFYFGAFSFIIAEIVGV 194
Query: 264 TTFNTYTRMVLEFKCK-HSKSFKENPNC-LPHHHQCFPRRLSS 304
+ Y + + K HS+ K++ LP + F RR SS
Sbjct: 195 VAVHIYIEKHQQLRAKSHSEFLKKSTFARLPPYRYRFRRRSSS 237
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 33.9 bits (76), Expect = 0.23
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 204 AAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAV 263
A + V +GL ++ ++Y ++ + + ++YGW+FY LSF V
Sbjct: 162 AGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGV 221
Query: 264 TTFNTYTRMVLEFKCK 279
N Y E C+
Sbjct: 222 LAVNIYIERSREAHCQ 237
>gi|167466173 heat shock 70kDa protein 1B [Homo sapiens]
Length = 641
Score = 32.7 bits (73), Expect = 0.52
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 273 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 332
V EFK KH K +N + RRL +A S + I S+ EG+DF
Sbjct: 242 VEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQASLEIDSLFEGIDF 293
Query: 333 YSELRNKGFQRGASQELKEAVRSSVE 358
Y+ + F+ S + RS++E
Sbjct: 294 YTSITRARFEELCS----DLFRSTLE 315
>gi|194248072 heat shock 70kDa protein 1A [Homo sapiens]
Length = 641
Score = 32.7 bits (73), Expect = 0.52
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 273 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 332
V EFK KH K +N + RRL +A S + I S+ EG+DF
Sbjct: 242 VEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQASLEIDSLFEGIDF 293
Query: 333 YSELRNKGFQRGASQELKEAVRSSVE 358
Y+ + F+ S + RS++E
Sbjct: 294 YTSITRARFEELCS----DLFRSTLE 315
>gi|13676857 heat shock 70kDa protein 2 [Homo sapiens]
Length = 639
Score = 32.3 bits (72), Expect = 0.68
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 275 EFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYS 334
EFK KH K N + RRL +A S + I S+ EGVDFY+
Sbjct: 247 EFKRKHKKDIGPNKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYT 298
Query: 335 ELRNKGFQ-------RGASQELKEAVRSS 356
+ F+ RG + +++A+R +
Sbjct: 299 SITRARFEELNADLFRGTLEPVEKALRDA 327
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 32.0 bits (71), Expect = 0.89
Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 9/172 (5%)
Query: 109 GMWLSCEETVEEPALLHPQSWKQ-FRALRSSGTAAAKGERCRSFIELTPPAKREILWLSL 167
G L +T E LH W+ F A R G A I L IL
Sbjct: 39 GTVLPQNQTTEVKMALHAGLWRVCFFAGREKGRCVASEYFLEPEINLVTENTENIL---- 94
Query: 168 GTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSV---LSGLLGMVAHMMY-S 223
T T +S L+ T +++ + + A VS + LSGL +V ++Y S
Sbjct: 95 KTVRTATPFPMVSLFLVFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYIS 154
Query: 224 QVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLE 275
+ +N + + YGW+F A SF + V + +T+ E
Sbjct: 155 SINDEVMNRPSSSEQYFHYRYGWSFAFAASSFLLKEGAGVMSVYLFTKRYAE 206
>gi|225579067 solute carrier family 12, member 4 isoform e [Homo
sapiens]
Length = 1054
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 179 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 233
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 508 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 567
Query: 234 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 260
+WRP Y WA +++L + C+A
Sbjct: 568 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 597
>gi|225579065 solute carrier family 12, member 4 isoform d [Homo
sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 179 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 233
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 533 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 592
Query: 234 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 260
+WRP Y WA +++L + C+A
Sbjct: 593 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 622
>gi|225579063 solute carrier family 12, member 4 isoform c [Homo
sapiens]
Length = 1087
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 179 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 233
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 541 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 600
Query: 234 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 260
+WRP Y WA +++L + C+A
Sbjct: 601 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 630
>gi|225579061 solute carrier family 12, member 4 isoform b [Homo
sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 179 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 233
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 539 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 598
Query: 234 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 260
+WRP Y WA +++L + C+A
Sbjct: 599 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 628
>gi|4827006 solute carrier family 12, member 4 isoform a [Homo
sapiens]
Length = 1085
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 179 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 233
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 539 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 598
Query: 234 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 260
+WRP Y WA +++L + C+A
Sbjct: 599 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 628
>gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens]
Length = 643
Score = 30.8 bits (68), Expect = 2.0
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 275 EFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYS 334
EF+ KH K N L RRL +A S I S+ EGVDFY+
Sbjct: 246 EFRRKHGKDLSGNKRAL--------RRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYT 297
Query: 335 ELRNKGFQRGASQELKEAVRSSVE 358
+ F+ S + RS++E
Sbjct: 298 SITRARFEELCS----DLFRSTLE 317
>gi|134304840 KIAA0319 [Homo sapiens]
Length = 1072
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 292 PHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKE 351
PH C P+++ GP+ SY + +P+ ++ +D+ + N+G G + E
Sbjct: 83 PHKENCEPKKM-------GPIRSYLTFVLRPVQRPAQLLDYGDMMLNRGSPSGIWGDSPE 135
Query: 352 AVRSSV 357
+R +
Sbjct: 136 DIRKDL 141
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 171 ITYIGLQFISFLLLLTDLLLTGNPACGL----KLSAFAAVSSVLSGLLGMVAHMMYSQVF 226
IT I L F+ LL + L T L KL+A A +L+G+ GMVA Y+ F
Sbjct: 83 ITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYA--F 140
Query: 227 QATVNLGPEDWRPHVWNYGWAFYMAW 252
T + + + G A Y+ W
Sbjct: 141 NITRDFFDPLYPGTKYELGPALYLGW 166
>gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens]
Length = 592
Score = 29.6 bits (65), Expect = 4.4
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 40 SFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQ 91
+F+ S L+NY + T + P E G+A K F + G T TS + VV+
Sbjct: 499 AFNQPSTLTNYEKIHTGQKPYKCEECGMAYKKFSSKIIHTGKTPTSVKNVVK 550
>gi|155969705 chloride channel Kb [Homo sapiens]
Length = 687
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 286 ENPNCLPHHHQCFPRRLSSAAPT------VGPLTSYHQYHN 320
E P+ P H QC L++ PT + P TS H+ HN
Sbjct: 606 EPPSWAPGHQQCLQDILAAGCPTEPVTLKLSPETSLHEAHN 646
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 29.3 bits (64), Expect = 5.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 206 VSSVLSGLLGMVAHMMYSQVFQATVNLGP---EDWRPHVWNYGWAFYMAWLSF 255
VS+ LS ++G++ ++ + N G D + + ++YGW+FY LSF
Sbjct: 143 VSAGLSNIIGIIVYI--------SANAGDPSKSDSKKNSYSYGWSFYFGALSF 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,859,597
Number of Sequences: 37866
Number of extensions: 577094
Number of successful extensions: 1412
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 43
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.