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Search of human proteins with 31791020
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31791020 keratin associated protein 20-1 [Homo sapiens]
(56 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31791020 keratin associated protein 20-1 [Homo sapiens] 144 2e-35
gi|31791014 keratin associated protein 20-2 [Homo sapiens] 96 8e-21
gi|31791018 keratin associated protein 19-7 [Homo sapiens] 71 2e-13
gi|31791022 keratin associated protein 19-5 [Homo sapiens] 71 2e-13
gi|149944573 keratin associated protein 19-8 [Homo sapiens] 63 6e-11
gi|31791028 keratin associated protein 19-4 [Homo sapiens] 63 6e-11
gi|31791038 keratin associated protein 6-1 [Homo sapiens] 62 8e-11
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 60 5e-10
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens] 59 8e-10
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 59 8e-10
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 56 7e-09
gi|31791012 keratin associated protein 22-1 [Homo sapiens] 56 7e-09
gi|31791016 keratin associated protein 21-2 [Homo sapiens] 55 9e-09
gi|31791032 keratin associated protein 19-2 [Homo sapiens] 55 2e-08
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-08
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-08
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-08
gi|31791024 keratin associated protein 19-6 [Homo sapiens] 54 2e-08
gi|31791010 keratin associated protein 21-1 [Homo sapiens] 53 6e-08
gi|31791040 keratin associated protein 6-2 [Homo sapiens] 52 1e-07
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 46 6e-06
gi|4505487 occludin [Homo sapiens] 44 2e-05
gi|153791670 keratin 76 [Homo sapiens] 43 5e-05
gi|239747524 PREDICTED: similar to serum response factor-related... 43 5e-05
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 43 5e-05
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 43 5e-05
gi|119395750 keratin 1 [Homo sapiens] 41 2e-04
gi|55956899 keratin 9 [Homo sapiens] 41 2e-04
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 41 2e-04
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 41 2e-04
>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
Length = 56
Score = 144 bits (362), Expect = 2e-35
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MIYYSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGFY 56
MIYYSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGFY
Sbjct: 1 MIYYSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGFY 56
>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
Length = 65
Score = 95.5 bits (236), Expect = 8e-21
Identities = 46/65 (70%), Positives = 46/65 (70%), Gaps = 9/65 (13%)
Query: 1 MIYYSNYYGG--YGYG------GLGCGYGCGYRGYGCGYG-GYGGYGNGYYCPSCYGRYW 51
M YYSNYYGG YGYG G GCGYG GY G GCGYG GYGGYG G PSCYGRYW
Sbjct: 1 MCYYSNYYGGLRYGYGVLGGGYGCGCGYGHGYGGLGCGYGRGYGGYGYGCCRPSCYGRYW 60
Query: 52 SYGFY 56
S GFY
Sbjct: 61 SCGFY 65
>gi|31791018 keratin associated protein 19-7 [Homo sapiens]
Length = 63
Score = 71.2 bits (173), Expect = 2e-13
Identities = 39/68 (57%), Positives = 41/68 (60%), Gaps = 17/68 (25%)
Query: 1 MIYYSNYYGGYGYG-----GLGCGYGCG---YR--GYGCGYGGYGGYGNGYYC--PSCYG 48
M Y +YYGG GYG GLG GY CG +R GYGCGYGGY Y C PSCYG
Sbjct: 1 MSYSGSYYGGLGYGCGGFGGLGYGYSCGCGSFRRLGYGCGYGGYR-----YSCCHPSCYG 55
Query: 49 RYWSYGFY 56
YWS GFY
Sbjct: 56 GYWSSGFY 63
>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
Length = 72
Score = 70.9 bits (172), Expect = 2e-13
Identities = 42/72 (58%), Positives = 43/72 (59%), Gaps = 16/72 (22%)
Query: 1 MIYYSNYYGG--YGYGG---LGCGYGCG---YR--GYGCGYGGYG------GYGNGYYCP 44
M YY NYYGG YGYGG LG GYGCG +R GYG GYGGYG GYG P
Sbjct: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
Query: 45 SCYGRYWSYGFY 56
SCYG Y GFY
Sbjct: 61 SCYGGYGFSGFY 72
>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
Length = 63
Score = 62.8 bits (151), Expect = 6e-11
Identities = 35/68 (51%), Positives = 37/68 (54%), Gaps = 17/68 (25%)
Query: 1 MIYYSNYYGGYGYG-----GLGCGYGCGYR-----GYGCGYGGYGGYGNGYYC--PSCYG 48
M YY +YYGG GYG G G GYGCGY GYGCGYGGY G+ C P YG
Sbjct: 1 MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGY-----GFSCCRPLYYG 55
Query: 49 RYWSYGFY 56
Y FY
Sbjct: 56 GYGFSAFY 63
>gi|31791028 keratin associated protein 19-4 [Homo sapiens]
Length = 84
Score = 62.8 bits (151), Expect = 6e-11
Identities = 36/61 (59%), Positives = 39/61 (63%), Gaps = 15/61 (24%)
Query: 1 MIYYSNYYGGYGYG-----GLGCGYGCG---YR--GYGCGYGGYGGYGNGYYC-PSCYGR 49
M YY +YY G GYG GLG GYGCG +R GYGCG+GG GYG YC PSCYG
Sbjct: 1 MSYYGSYYRGLGYGCGGFGGLGYGYGCGCGSFRRLGYGCGFGG-NGYG---YCRPSCYGG 56
Query: 50 Y 50
Y
Sbjct: 57 Y 57
>gi|31791038 keratin associated protein 6-1 [Homo sapiens]
Length = 71
Score = 62.4 bits (150), Expect = 8e-11
Identities = 34/66 (51%), Positives = 36/66 (54%), Gaps = 26/66 (39%)
Query: 3 YYSNYYG------------GYGYGGLGCGY----GCGYRGYGCGYG-------GYG---G 36
YY NYYG GYGYGGLGCGY GCG+R GCGYG GYG G
Sbjct: 5 YYGNYYGTPGYGFCGYGGLGYGYGGLGCGYGSCCGCGFRRLGCGYGYGSRSLCGYGYGCG 64
Query: 37 YGNGYY 42
G+GYY
Sbjct: 65 SGSGYY 70
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 59.7 bits (143), Expect = 5e-10
Identities = 34/61 (55%), Positives = 36/61 (59%), Gaps = 14/61 (22%)
Query: 8 YGGY--GYGGLGCGYG----CGYRGYGCGYGGYGGY------GNGYYCPSCYGRYWSYGF 55
YGG GYGGLGCGYG CGYRG CGYG GY G GY C S YG S+G+
Sbjct: 51 YGGLDCGYGGLGCGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYRCGSGYGS--SFGY 108
Query: 56 Y 56
Y
Sbjct: 109 Y 109
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/48 (58%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 YYSNYYGGYGYGGLGCG-YGCGYRGYGCGYGGYGGYGNGYYCPSC-YG 48
YY NY GG+GYG G G GCGY G G G GYGG G GY C YG
Sbjct: 12 YYRNYNGGHGYGCCGYGGLGCGYGGCGYGCCGYGGLGFGYGGLDCGYG 59
>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 58.9 bits (141), Expect = 8e-10
Identities = 34/67 (50%), Positives = 36/67 (53%), Gaps = 16/67 (23%)
Query: 3 YYSNYYGGYGYG-----------GLGCGYGCGY-RGYGCGYG-GYG-GYGNGYYCPSCYG 48
Y Y GYGYG G CGYGCGY GYGCGYG YG GYG GY C YG
Sbjct: 16 YGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCG--YG 73
Query: 49 RYWSYGF 55
+S G+
Sbjct: 74 SGYSCGY 80
Score = 52.4 bits (124), Expect = 8e-08
Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 4 YSNYYG---GYGYG-GLGCGYGCGY-RGYGCGYGGYGGYGNGYYCPSCYGRYWS 52
YS YG G GYG G GCGYGCGY GYGCG G GY Y P C+ R +S
Sbjct: 76 YSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYCG--YRPFCFRRCYS 127
Score = 49.3 bits (116), Expect = 7e-07
Identities = 35/71 (49%), Positives = 38/71 (53%), Gaps = 23/71 (32%)
Query: 6 NYYG---------GYGYG-GLGCG----YGCGYR-----GYGCGYG-GYG-GYGNGYYCP 44
NYYG G GYG G G G YGCGY GYGCGYG GYG GYG+ Y C
Sbjct: 4 NYYGNSCGYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYGCGYGSSYGCG 63
Query: 45 SCYGRYWSYGF 55
YG +S G+
Sbjct: 64 --YGTGYSCGY 72
Score = 48.5 bits (114), Expect = 1e-06
Identities = 32/70 (45%), Positives = 34/70 (48%), Gaps = 18/70 (25%)
Query: 3 YYSNYYGGYGYG---GLGCGYG----CGY-RGYGCGYG-----GYG-----GYGNGYYCP 44
Y + Y GYG G G GCGYG CGY GY CGYG GYG GYG G+ C
Sbjct: 36 YGTGYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCG 95
Query: 45 SCYGRYWSYG 54
G YG
Sbjct: 96 YGCGYGTGYG 105
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 18 CGYGCGYRGYGCGYG-GYG-----GYGNGYYCPSCYGRYWSYGF 55
C Y GYG YG GYG GYG+ Y C YG +S G+
Sbjct: 3 CNYYGNSCGYGSSYGCGYGSGYGYGYGSSYGCG--YGTGYSCGY 44
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 58.9 bits (141), Expect = 8e-10
Identities = 37/84 (44%), Positives = 40/84 (47%), Gaps = 31/84 (36%)
Query: 1 MIYYSNYYGGYGYG-----GLGCGYGCG---YR--------------------GYGCGYG 32
M YY +YYGG GYG GLG GYGCG +R GYG G
Sbjct: 1 MSYYGSYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSG-- 58
Query: 33 GYGGYGNGYYCPSCYGRYWSYGFY 56
+GGYG G Y PS YG Y GFY
Sbjct: 59 -FGGYGYGCYRPSYYGGYGFSGFY 81
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 55.8 bits (133), Expect = 7e-09
Identities = 36/90 (40%), Positives = 39/90 (43%), Gaps = 34/90 (37%)
Query: 1 MIYYSNYYGGYGY-----GGLGCGYGCGYR-----------------------GYGCGYG 32
M +Y +YYGG GY GGLG GYGCG GYG G+G
Sbjct: 1 MSHYGSYYGGLGYSCGGFGGLGYGYGCGCGSFCRRGSGCGYGGYGYGSGFGSYGYGSGFG 60
Query: 33 GY------GGYGNGYYCPSCYGRYWSYGFY 56
GY GGYG G PS G Y GFY
Sbjct: 61 GYGYGSGFGGYGYGCCRPSYNGGYGFSGFY 90
>gi|31791012 keratin associated protein 22-1 [Homo sapiens]
Length = 48
Score = 55.8 bits (133), Expect = 7e-09
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 1 MIYYSNYYGGYGY--GGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGFY 56
M + +NY+GG GY GGLGC YGC G GYG YCP CY R W G +
Sbjct: 1 MSFDNNYHGGQGYAKGGLGCSYGC----------GLSGYGYACYCPWCYERSWFSGCF 48
>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
Length = 83
Score = 55.5 bits (132), Expect = 9e-09
Identities = 36/77 (46%), Positives = 37/77 (48%), Gaps = 28/77 (36%)
Query: 3 YYSNYYGGYGYG-------GLGCGYGCGYRGYGCGYG-GYG---GYGNGY---------- 41
YY N GG GYG G GCGYGCGY G GC YG GYG GYG GY
Sbjct: 5 YYRNCCGGCGYGSGWSSGCGYGCGYGCGY-GSGCRYGSGYGTGCGYGCGYGSGCGYGCGY 63
Query: 42 ------YCPSCYGRYWS 52
Y P CY R +S
Sbjct: 64 SSSCCGYRPLCYRRCYS 80
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 22 CGYRGY------GCGYG-GYG-GYGNGYYCPSCYGRYWSYG 54
CG GY GCGYG GYG GYG+G S YG YG
Sbjct: 10 CGGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYGTGCGYG 50
>gi|31791032 keratin associated protein 19-2 [Homo sapiens]
Length = 52
Score = 54.7 bits (130), Expect = 2e-08
Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 12/54 (22%)
Query: 11 YGYGGLGCG------YGCGYRG--YGCGYGGYGGYGNGYYCPSCYGRYWSYGFY 56
YGYG GCG YGCGY G YGCG + G G+G CPSCY RY GFY
Sbjct: 3 YGYG-CGCGSFCRLGYGCGYEGCRYGCG---HRGCGDGCCCPSCYRRYRFTGFY 52
>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 54.3 bits (129), Expect = 2e-08
Identities = 30/52 (57%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 6 NYYGGYGYGGLGCGYGCGY-RGYGCGYG-GYG-GYGNGYYCPSCYGRYWSYG 54
NYYG G GC YGCGY GYGCGYG YG GYG GY C G YG
Sbjct: 4 NYYGNSC--GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYG 53
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 4 YSNYYG---GYGYG-GLGCGYGCGY-RGYGCGYGGYGGYGNGYYCPSCYGRYWS 52
YS YG G GYG G GCGYGCGY GYGCG G GY Y P C+ R +S
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCG--YRPFCFRRCYS 91
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 18 CGYGCGYRGYGCGYG-GYG-----GYGNGYYCPSCYGRYWSYGF 55
C Y GYGC YG GYG GYG+ Y C YG +S G+
Sbjct: 3 CNYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCG--YGTGYSCGY 44
>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 54.3 bits (129), Expect = 2e-08
Identities = 30/52 (57%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 6 NYYGGYGYGGLGCGYGCGY-RGYGCGYG-GYG-GYGNGYYCPSCYGRYWSYG 54
NYYG G GC YGCGY GYGCGYG YG GYG GY C G YG
Sbjct: 4 NYYGNSC--GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYG 53
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 4 YSNYYG---GYGYG-GLGCGYGCGY-RGYGCGYGGYGGYGNGYYCPSCYGRYWS 52
YS YG G GYG G GCGYGCGY GYGCG G GY Y P C+ R +S
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCG--YRPFCFRRCYS 91
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 18 CGYGCGYRGYGCGYG-GYG-----GYGNGYYCPSCYGRYWSYGF 55
C Y GYGC YG GYG GYG+ Y C YG +S G+
Sbjct: 3 CNYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCG--YGTGYSCGY 44
>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 54.3 bits (129), Expect = 2e-08
Identities = 30/52 (57%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 6 NYYGGYGYGGLGCGYGCGY-RGYGCGYG-GYG-GYGNGYYCPSCYGRYWSYG 54
NYYG G GC YGCGY GYGCGYG YG GYG GY C G YG
Sbjct: 34 NYYGNSC--GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYG 83
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 4 YSNYYG---GYGYG-GLGCGYGCGY-RGYGCGYGGYGGYGNGYYCPSCYGRYWS 52
YS YG G GYG G GCGYGCGY GYGCG G GY Y P C+ R +S
Sbjct: 70 YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCG--YRPFCFRRCYS 121
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 18 CGYGCGYRGYGCGYG-GYG-----GYGNGYYCPSCYGRYWSYGF 55
C Y GYGC YG GYG GYG+ Y C YG +S G+
Sbjct: 33 CNYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCG--YGTGYSCGY 74
>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
Length = 58
Score = 54.3 bits (129), Expect = 2e-08
Identities = 31/61 (50%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 1 MIYYSNYYGGYGYG-----GLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGF 55
M YY +YY G GYG GLG G GCG YG GYGGY G PSC Y GF
Sbjct: 1 MRYYGSYYRGLGYGCGGFGGLGYGCGCGGYRYG---SGYGGYRYGCCRPSCREGYGFSGF 57
Query: 56 Y 56
Y
Sbjct: 58 Y 58
>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
Length = 79
Score = 52.8 bits (125), Expect = 6e-08
Identities = 36/74 (48%), Positives = 39/74 (52%), Gaps = 27/74 (36%)
Query: 6 NYYG-----------GYGYG-GLGCGYGCGYR-GYGCGYG-----GYG-GYGNGY----- 41
NYYG GYG G G GCGYG GY GYGCG+G GYG GYG GY
Sbjct: 4 NYYGNSCGYGSGCGCGYGSGSGCGCGYGTGYGCGYGCGFGSHYGCGYGTGYGCGYGSGSG 63
Query: 42 YC---PSCYGRYWS 52
YC P C+ R +S
Sbjct: 64 YCGYRPFCFRRCYS 77
Score = 33.1 bits (74), Expect = 0.050
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 22 CGYRGYGCGYG-GYG-GYGNGYYCPSCYGRYWSYGF 55
C Y G CGYG G G GYG+G C YG + G+
Sbjct: 3 CNYYGNSCGYGSGCGCGYGSGSGCGCGYGTGYGCGY 38
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 18 CGYGCGYRGYGCGYG-GYG-------GYGNGYYCP-SC-YGRYWSYGF 55
C Y GYG G G GYG GYG GY C C +G ++ G+
Sbjct: 3 CNYYGNSCGYGSGCGCGYGSGSGCGCGYGTGYGCGYGCGFGSHYGCGY 50
>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
Length = 62
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/56 (53%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 3 YYSNYYGGYGYG-----GLGCGYG---CGYR---GYGCGYGGYGGYGNGYYCPSCY 47
YY NYYG +GYG GLG GYG CGY GYG GYG G GY C S Y
Sbjct: 5 YYGNYYGDHGYGCCGYEGLGYGYGSLRCGYSSCCGYGHGYGSRFFCGCGYGCGSGY 60
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 46.2 bits (108), Expect = 6e-06
Identities = 22/47 (46%), Positives = 25/47 (53%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRY 50
Y+ + GYGG G GY G RGYG G GYG G+GY Y Y
Sbjct: 244 YNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
Score = 36.6 bits (83), Expect = 0.005
Identities = 26/58 (44%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 9 GGYGYGGLGCGY---------GCGYRGYGCGYGGYGGYGNGY-YCPSCYGRYWSYGFY 56
GG GYGG G GY G G GY G GYG G GY S YG SY Y
Sbjct: 233 GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
Score = 32.7 bits (73), Expect = 0.065
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 9 GGYGYGGLGCGYGCGYRGYG---CGYGGYG---------GYGNGYYCPSCYGRYWSY 53
GG GY G GYG G +GYG GYGG G G G G S +G SY
Sbjct: 256 GGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSY 312
Score = 32.3 bits (72), Expect = 0.085
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 4 YSNYYGGYGYGGLGCG-YGCGYRGYGC----GYGGYGGYGNG 40
YS GYG GG G G G GY G G GG GG+G G
Sbjct: 260 YSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGG 301
Score = 29.3 bits (64), Expect = 0.72
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 6 NYYGGYGYGGLG----CGYGCGYRGYGC-----GYGGYGGYGNGYYCPSCYGRYWSYG 54
N+ GG G GG G G G + G G G GGYGG G+GY + +G YG
Sbjct: 201 NFGGGRG-GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY---NGFGNDGGYG 254
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 10 GYGYGGLGCGYGCGYRGYGCGYGGYGG--YGNGYYCPSCYGRYWSYGFY 56
G GYGG G Y G G G+GG G +G G G Y +G Y
Sbjct: 278 GSGYGGSG-SYDSYNNGGGGGFGGGSGSNFGGG-------GSYNDFGNY 318
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 44.3 bits (103), Expect = 2e-05
Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGY 34
YGG G+G G GYG GY GYG GYGGY
Sbjct: 106 YGGSGFGSYGSGYGYGY-GYGYGYGGY 131
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 7/32 (21%)
Query: 10 GYGYGGLGCG-YGCGYRGYGCGYG---GYGGY 37
GY YGG G G YG GY G GYG GYGGY
Sbjct: 103 GYPYGGSGFGSYGSGY---GYGYGYGYGYGGY 131
Score = 31.6 bits (70), Expect = 0.15
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 10 GYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGF 55
GYG LG G GY G G+G YG+GY YG + YG+
Sbjct: 92 GYGTSLLG-----GSVGYPYGGSGFGSYGSGY----GYGYGYGYGY 128
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 7 YYGGYGYGGLGCGYGCGY---RGYGCGYGGYGGYG--NGYYCPSCYGRYWSYG 54
+ GGYG GG G YG G+ RG G G+GG GG+G G+ P +G S+G
Sbjct: 90 FAGGYG-GGFGGSYGGGFGGGRGVGSGFGGAGGFGGAGGFGGPGVFGGPGSFG 141
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 6 NYYGGYGYG-GLGCGYGCGYRGYGCGYGGYGGYG 38
+Y GG+G G G+G G+G G G+G G GG+GG G
Sbjct: 101 SYGGGFGGGRGVGSGFG-GAGGFG-GAGGFGGPG 132
Score = 29.3 bits (64), Expect = 0.72
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 5 SNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
S + G G+GG G G G G +GG GG+G G
Sbjct: 114 SGFGGAGGFGGAGGFGGPGVFGGPGSFGGPGGFGPG 149
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 43.1 bits (100), Expect = 5e-05
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRY 50
Y+ + GYGG G GY G RGYG GYG G+GY Y Y
Sbjct: 51 YNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSY 97
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/50 (48%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 10 GYGYGGLGC--GYGCGYRGYGCGYGGYGGYGNGYYCP-SCYGRYWSYGFY 56
G GY G G GYG G GY G GYG G GY S YG SY Y
Sbjct: 48 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSY 97
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
YS GYG G GYG GYG G G Y Y NG
Sbjct: 67 YSGGSRGYGSVGQ--GYGSQGSGYG-GSGSYNSYNNG 100
Score = 29.3 bits (64), Expect = 0.72
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 5 SNYYGG--YGYGGLGCGYG--CGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSY 53
S YG GYG G GYG Y Y G GG G G+G S +G SY
Sbjct: 71 SRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSG----SSFGGSGSY 119
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 6 NYYGGYGYGGLGCGYGCGYRGYGCGYGGYGG----YGNGYYCPSCYGRYWSY 53
N+ G GYGG GYG G GYG GGYGG YG G Y Y + +Y
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 306
Score = 42.0 bits (97), Expect = 1e-04
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 9 GGYGYGGLGCGYGCGYRGYG---CGYGGYGGYGNGYYCPSCYGRYWSYGF 55
GG GYG G GYG GY YG G G Y +GN PS YG S F
Sbjct: 272 GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNF 321
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 4 YSNYYGGYGYGGLGC--GYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYG 54
Y+ Y GG G G G GYG G GYG G GYG G GY G Y +YG
Sbjct: 244 YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY-----GGGYDNYG 291
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
+ + Y GYG GG G G G GYG G GGYGG G GY
Sbjct: 240 FGDGYNGYG-GGPGGGNFGGSPGYGGGRGGYGGGGPGY 276
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGG--YGNGYYCPSCYGRY 50
Y GGYG G G GYG GYG GY YGG YG+G Y + +G Y
Sbjct: 262 YGGGRGGYGGG--GPGYGNQGGGYGGGYDNYGGGNYGSGNY--NDFGNY 306
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 5 SNYYGGYGYGGLGCGYGCGYRGYGCG-----YGGYGGYGNG 40
SN+ GG G G G+G GY GYG G +GG GYG G
Sbjct: 225 SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGG 265
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 12 GYGGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
G G G G G +RG GYG G+G+GY
Sbjct: 215 GGGNFGPGPGSNFRGGSDGYGSGRGFGDGY 244
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 9 GGYGYG-GLGCGYGCGYRGYGCGYG---GYGGYGNG 40
GG +G G G + G GYG G G GY GYG G
Sbjct: 215 GGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGG 250
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 6 NYYGGYGYGGLGCGYGCGYRGYGCGYGGYGG----YGNGYYCPSCYGRYWSY 53
N+ G GYGG GYG G GYG GGYGG YG G Y Y + +Y
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 294
Score = 42.0 bits (97), Expect = 1e-04
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 9 GGYGYGGLGCGYGCGYRGYG---CGYGGYGGYGNGYYCPSCYGRYWSYGF 55
GG GYG G GYG GY YG G G Y +GN PS YG S F
Sbjct: 260 GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNF 309
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 4 YSNYYGGYGYGGLGC--GYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYG 54
Y+ Y GG G G G GYG G GYG G GYG G GY G Y +YG
Sbjct: 232 YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY-----GGGYDNYG 279
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
+ + Y GYG GG G G G GYG G GGYGG G GY
Sbjct: 228 FGDGYNGYG-GGPGGGNFGGSPGYGGGRGGYGGGGPGY 264
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGG--YGNGYYCPSCYGRY 50
Y GGYG G G GYG GYG GY YGG YG+G Y + +G Y
Sbjct: 250 YGGGRGGYGGG--GPGYGNQGGGYGGGYDNYGGGNYGSGNY--NDFGNY 294
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 5 SNYYGGYGYGGLGCGYGCGYRGYGCG-----YGGYGGYGNG 40
SN+ GG G G G+G GY GYG G +GG GYG G
Sbjct: 213 SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGG 253
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 12 GYGGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
G G G G G +RG GYG G+G+GY
Sbjct: 203 GGGNFGPGPGSNFRGGSDGYGSGRGFGDGY 232
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 9 GGYGYG-GLGCGYGCGYRGYGCGYG---GYGGYGNG 40
GG +G G G + G GYG G G GY GYG G
Sbjct: 203 GGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGG 238
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
YGG G+GG G G G G+ G G G GG+GG+G+G
Sbjct: 94 YGGGGFGGGGFGGG-GFGGGGIGGGGFGGFGSG 125
Score = 40.0 bits (92), Expect = 4e-04
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 10/46 (21%)
Query: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGY-------GGYGNGY--YCP 44
+GG G+GG G G G G+ G+G G GG+ GGYG GY CP
Sbjct: 104 FGGGGFGGGGIGGG-GFGGFGSGGGGFGGGGFGGGGYGGGYGPVCP 148
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/40 (50%), Positives = 21/40 (52%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYG 48
GG GYG G YG G YG G GG GG G+ S YG
Sbjct: 521 GGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYG 560
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
G YG GG G G G G G G GG+G YG+G
Sbjct: 550 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSG 581
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/40 (47%), Positives = 19/40 (47%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYG 48
GG GG G GYG G YG G G YG G G YG
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYG 553
Score = 35.8 bits (81), Expect = 0.008
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 14 GGLGCGYGCGYRGYGCGYGGYGGYGNG 40
GG G G+G GY G G G GG+GG G G
Sbjct: 84 GGRGSGFGGGYGGGGFGGGGFGGGGFG 110
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 4 YSNYYGGYGYGGLGCG----YGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYG 54
Y + G YG GG G G YG G YG G G YG G G G + SYG
Sbjct: 532 YGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGG-------GGHGSYG 579
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 4 YSNYYGGYGYGGLGCGYGC--------GYRG--YGCGYGGYGGYGNG 40
Y + G YG GG G G+G GYRG G G G GG G+G
Sbjct: 559 YGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSG 605
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/47 (40%), Positives = 20/47 (42%)
Query: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYG 54
+G YG G GY G G G G G G G G S GR S G
Sbjct: 575 HGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSG 621
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 9 GGYGYGGLGCGYGCGYRG-YGCGYGGYGGYGNG 40
GG+G GG G G G G+ G YG G+GG+GG+G G
Sbjct: 109 GGFG-GGFGGGSGGGFGGGYGSGFGGFGGFGGG 140
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
+GG GG G GYG G+ G+G G+GG G G+G
Sbjct: 115 FGGGSGGGFGGGYGSGFGGFG-GFGGGAGGGDG 146
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 9 GGYGYGGLGCGYGCGYRGY----GCGYGGYGGYGNGYYCPSCYGRYWSYG 54
GG+ LG G+G G RG+ G GY GG+G G+ S G YG
Sbjct: 79 GGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYG 128
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 9 GGYGYGGLGCGYG--CGYRG-----YGCGYGGYGGYGNGY 41
G YG GG G GYG G RG YG G G GG G GY
Sbjct: 495 GSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGY 534
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 5 SNYYGGYGYG--GLGCGYGCGYR---GYGCGYGG--YGGYGNGYYCPSCYGRYWSYG 54
S+ GG+G G G G G GY G+G G+GG GG+G GY S +G + +G
Sbjct: 84 SSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGY--GSGFGGFGGFG 138
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 12 GYGGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
G GG G YG G RG G G GG G GY
Sbjct: 477 GRGGSGGSYGRGSRGGSGGSYGGGGSGGGY 506
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 8 YGGYGYGGLGCGYGCGYRG-----YGCGYGGYGGYGNGY 41
YGG GG G G G+ G YG G G GG G GY
Sbjct: 534 YGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGY 572
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYG 48
G YG GG G G G G GYG G G GG G + S +G
Sbjct: 556 GNYG-GGSGSGGGSG-GGYGGGSGSRGGSGGSHGGGSGFG 593
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 6 NYYGGYGY-GGLGCGYGCGYRGYGCGYGGYGGYGNGY 41
NY GG G GG G GYG G G G GG G G+G+
Sbjct: 557 NYGGGSGSGGGSGGGYGGGSGSRG-GSGGSHGGGSGF 592
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGY--GGYGNGYYCPSCYGRY 50
GGYG G G G G G G+GG G YG G G Y
Sbjct: 570 GGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGY 613
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 8 YGGYGYGGLGCGYGCGYR--GYGCGYGGYGGYGNGY 41
YG GG G YG G GYG G G GG G Y
Sbjct: 485 YGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSY 520
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 9 GGYG-----YGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
GGYG GG G YG G G GGYGG G
Sbjct: 504 GGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGG 540
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGG--YGGYGNGY 41
G YG GG G G G G GYG G GG GG G G+
Sbjct: 518 GSYG-GGSGSGGGSG-GGYGGGSGGGHSGGSGGGH 550
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
G YG G G G G Y G G G GGYGG G+G
Sbjct: 483 GSYGRGSRG-GSGGSYGGGGSG-GGYGG-GSG 511
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 4 YSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
+S GG GG G YG G G GGYGG G+G
Sbjct: 542 HSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGG-GSG 577
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 9 GGYGYGG-LGCGYGCGYRGYGCGYGGYGGYGNG 40
GG G+GG G YG G G G GGYG G
Sbjct: 588 GGSGFGGESGGSYGGGEEASGSG----GGYGGG 616
Score = 26.6 bits (57), Expect = 4.7
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 6 NYYGGYGYGG-LGCGYGCGYRG--YGCGYGGYGGYGNGYY 42
+Y GG G GG G GYG G G G GG+ G G Y
Sbjct: 519 SYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNY 558
Score = 25.8 bits (55), Expect = 8.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNG 40
GGYG GG G G+ G G G G G YG G
Sbjct: 532 GGYG-GGSGGGHSGGSGGGHSGGSG-GNYGGG 561
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 41.2 bits (95), Expect = 2e-04
Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 GGYG-YGGLGCGYGCGYRGYGCGYGG--YGG--YGNGYYCPSCYGRYW-SYG 54
GGY YGG G G G GY YG G GG YGG YGNG+ Y ++ SYG
Sbjct: 215 GGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 266
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 4 YSNYYGGYG-----YGGLGCGYGCGYRGYGCGYGGYGGY 37
Y Y GG G YGG G G G YG G+GG+G Y
Sbjct: 220 YGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSY 258
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYY 42
GG GL G G GY YG GYGG GG G Y
Sbjct: 202 GGRDQNGLSKGGGGGYNSYG-GYGGGGGGGYNAY 234
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 4 YSNYYGGYG---YGGLGCGYGCGYRG------YGCGYGGYGGYGNGYY 42
YS + YG GG G G G + G Y GYGG GGYG +
Sbjct: 258 YSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 9 GGYGYGGLGCGYGCGYRGYGC-----GYGGYGGYGNGYYCPSCYG 48
GG G G GCG GCG G GC G GG GG G+G C C G
Sbjct: 15 GGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSG--CAGCGG 57
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYG--GYGGYGNGYYCPSC 46
GG G G GCG GCG G GCG G G GG G+G P C
Sbjct: 29 GGCGSGCGGCGSGCGGCG-GCGSGCAGCGGCGSGCCVPVC 67
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 17 GCGYGCGYRGYGCGYGGYGGYGNGYYCPSC 46
GCG GCG RG GCG G G G G C C
Sbjct: 9 GCGSGCGGRGSGCGGCGSGCGGCGSGCGGC 38
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/40 (50%), Positives = 20/40 (50%)
Query: 9 GGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYG 48
GG G G G G GCG G GCG G G G G C C G
Sbjct: 8 GGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGG 47
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 14 GGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSC 46
G GC GCG GCG G G G G C C
Sbjct: 2 GCCGCSGGCGS---GCGGRGSGCGGCGSGCGGC 31
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.162 0.628
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,172,158
Number of Sequences: 37866
Number of extensions: 153708
Number of successful extensions: 2511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 1011
length of query: 56
length of database: 18,247,518
effective HSP length: 29
effective length of query: 27
effective length of database: 17,149,404
effective search space: 463033908
effective search space used: 463033908
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.